View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2877_low_3 (Length: 478)
Name: NF2877_low_3
Description: NF2877
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2877_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 454
Target Start/End: Complemental strand, 47428376 - 47427941
Alignment:
| Q |
19 |
gggcaagttagtagctcataaaatttccaagtcttttgattcagatgactctccaaaattacaaatacaaggcctgttctatactcagtccccaaggttt |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428376 |
gggcaaggtagtagctcataaaatttccaagtcttttgattcagatgactctccaaaattacaaatacaaggcctgttctatactcagtccccaaggttt |
47428277 |
T |
|
| Q |
119 |
cgtccaacagcttctgaatttgtgaaaaaagctgctacgaagattcaagcttcctttcgctcctacttggtataaacttctctctatatttcattacatt |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428276 |
cgtccaacagctgctgaatttgtgaaaaaagctgctacaaagattcaagcttcctttcgctcctacttggtataaacttctctctatatttcattacatt |
47428177 |
T |
|
| Q |
219 |
ttaaaaaatgtgatcgcatgtgttggtgtcacacaccggacatgtcttctcgatctcaagtgtatgtgatacaaagtttatgctataacatacatacaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428176 |
ttaaaaaatgtgatcgcatgtgttggtgtcacacaccggacatgtcttctcgatctcaagtgtatgtgatacaaagtttatgctataacatacatacaaa |
47428077 |
T |
|
| Q |
319 |
atttgcaggcaaggagagcattgcatgctttaaagggattggtgaagttacaggcactagtgaggggtcaccttgtaaggaaacaaacaactgcaacact |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428076 |
atttgcaggcaaggagagcattgcatgctttaaagggattggtgaagttacaggcactagtgaggggtcaccttgtaaggaaacaaacaactgcaacact |
47427977 |
T |
|
| Q |
419 |
acgcggaatgcatgcattgatgtcgatacaagttag |
454 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47427976 |
acgtggaatgcatgcattgatgtcgatacaagttag |
47427941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University