View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2878_high_2 (Length: 568)
Name: NF2878_high_2
Description: NF2878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2878_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 128 - 555
Target Start/End: Original strand, 18237770 - 18238194
Alignment:
| Q |
128 |
ctttcatcaaatcaaacatatgcatgtatgtccttaagtatgtccaaaatataatcaccttcgattctgaggagaaaggaaataaattccaatgctgaag |
227 |
Q |
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| T |
18237770 |
ctttcatcaaatcaaacatatgcatgtatatccttaagtatgtccaaaatataatcaccttggattatgaggagaaaggaaataaattccaatgctgaag |
18237869 |
T |
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| Q |
228 |
ttattcgtaccagaattcttgaaactttcaggccacacagttgatttttgatggaagtttgcagaaatcatattagggagatatctagcctcttcatgaa |
327 |
Q |
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| T |
18237870 |
ttattcgtaccagaattcttgaaactttcaggccacacggttgatttttgaaggaagtttgcagaaatcatattagggagatatctagcctcttcatgaa |
18237969 |
T |
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| Q |
328 |
ctttagggcatgctaaaatagacaaatgtcccattagttcaatgacttttccaatatttgaaaccttcaaacatcccctattgtccaagaaaattaaact |
427 |
Q |
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| T |
18237970 |
ctttagggcatgctaaagtagacaaatgtcccattagttcaatgacttttccaatgtttgaaaccttcaaacatcccctattatccaagaaaattaaact |
18238069 |
T |
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| Q |
428 |
ttagacatattctatcattaattccaaaacagccataggtnnnnnnnnnnnnnnnnnntcattcttacctccatattgggtcagcaataggttgtggatg |
527 |
Q |
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| T |
18238070 |
tcagacatattctatcattaattccaaaacagccataggt---aaaaaaaaaaaaaaatcattcttacctccatattgggtcagcaataggttgtggatg |
18238166 |
T |
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| Q |
528 |
cacactagccgcagcacattcaccgttc |
555 |
Q |
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| T |
18238167 |
cacactagccgcagcacattcaccgttc |
18238194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 365
Target Start/End: Original strand, 11788386 - 11788449
Alignment:
| Q |
302 |
agggagatatctagcctcttcatgaactttagggcatgctaaaatagacaaatgtcccattagt |
365 |
Q |
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| T |
11788386 |
agggatatgtcttgcctcttcaagtactttagggcatgctaatgtggacaaatgtcccattagt |
11788449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 321 - 365
Target Start/End: Original strand, 501468 - 501512
Alignment:
| Q |
321 |
tcatgaactttagggcatgctaaaatagacaaatgtcccattagt |
365 |
Q |
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| T |
501468 |
tcatgaactttagggcatgctaaattggacaaatggccaattagt |
501512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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