View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2878_low_11 (Length: 220)

Name: NF2878_low_11
Description: NF2878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2878_low_11
NF2878_low_11
[»] chr1 (32 HSPs)
chr1 (18-196)||(31694707-31694885)
chr1 (82-196)||(1486706-1486820)
chr1 (77-193)||(38078661-38078772)
chr1 (82-196)||(6612168-6612282)
chr1 (82-178)||(398780-398876)
chr1 (77-189)||(18471241-18471355)
chr1 (82-193)||(42359449-42359560)
chr1 (76-137)||(10577791-10577852)
chr1 (158-215)||(47989521-47989577)
chr1 (87-150)||(48040505-48040568)
chr1 (158-196)||(24577183-24577221)
chr1 (158-193)||(18337353-18337388)
chr1 (114-218)||(18556432-18556535)
chr1 (158-193)||(51410049-51410084)
chr1 (158-196)||(113323-113361)
chr1 (158-196)||(1704989-1705027)
chr1 (158-192)||(1815281-1815315)
chr1 (82-124)||(3490453-3490495)
chr1 (93-127)||(5927406-5927440)
chr1 (158-196)||(5944307-5944345)
chr1 (158-196)||(6332694-6332732)
chr1 (82-148)||(16297328-16297394)
chr1 (158-192)||(40258934-40258968)
chr1 (82-124)||(41597539-41597581)
chr1 (114-193)||(46348383-46348462)
chr1 (159-196)||(2218264-2218301)
chr1 (106-196)||(5376497-5376587)
chr1 (160-193)||(19058856-19058889)
chr1 (158-215)||(44482254-44482310)
chr1 (161-193)||(24334705-24334737)
chr1 (160-196)||(30173759-30173795)
chr1 (162-190)||(52284731-52284759)
[»] chr7 (21 HSPs)
chr7 (88-218)||(24339596-24339725)
chr7 (82-192)||(11061077-11061187)
chr7 (93-196)||(27945000-27945103)
chr7 (82-196)||(5409833-5409947)
chr7 (77-196)||(9778451-9778562)
chr7 (86-196)||(13770643-13770753)
chr7 (83-193)||(26733253-26733363)
chr7 (82-193)||(25481850-25481961)
chr7 (93-196)||(43027466-43027569)
chr7 (158-194)||(3991348-3991384)
chr7 (158-217)||(26033438-26033496)
chr7 (158-196)||(18039023-18039061)
chr7 (158-194)||(21560527-21560563)
chr7 (82-137)||(21141038-21141093)
chr7 (158-196)||(2334274-2334312)
chr7 (158-212)||(9408316-9408369)
chr7 (86-124)||(9408410-9408448)
chr7 (162-196)||(11272583-11272617)
chr7 (158-196)||(32094017-32094055)
chr7 (158-215)||(7438730-7438786)
chr7 (160-193)||(21880178-21880211)
[»] chr8 (23 HSPs)
chr8 (77-214)||(22651919-22652055)
chr8 (82-213)||(29510285-29510415)
chr8 (77-217)||(2572033-2572172)
chr8 (76-196)||(24362199-24362319)
chr8 (107-193)||(20873042-20873128)
chr8 (82-124)||(3951598-3951640)
chr8 (158-196)||(25566865-25566903)
chr8 (82-127)||(926854-926899)
chr8 (82-127)||(16642032-16642077)
chr8 (82-127)||(24413626-24413671)
chr8 (158-193)||(4948676-4948711)
chr8 (101-196)||(13436961-13437056)
chr8 (158-216)||(15816107-15816164)
chr8 (82-124)||(21465374-21465416)
chr8 (82-124)||(43737882-43737924)
chr8 (90-192)||(4673426-4673528)
chr8 (82-192)||(22197743-22197853)
chr8 (160-193)||(24669459-24669492)
chr8 (93-126)||(40332164-40332197)
chr8 (158-191)||(40332215-40332248)
chr8 (158-194)||(8342996-8343032)
chr8 (158-214)||(11927066-11927121)
chr8 (77-121)||(20785531-20785575)
[»] chr6 (30 HSPs)
chr6 (82-217)||(16766645-16766779)
chr6 (82-196)||(9107367-9107481)
chr6 (93-217)||(8365496-8365619)
chr6 (82-193)||(8776973-8777084)
chr6 (82-192)||(7938064-7938174)
chr6 (107-185)||(17435172-17435250)
chr6 (93-196)||(12696284-12696386)
chr6 (83-193)||(7977830-7977940)
chr6 (82-196)||(9027126-9027240)
chr6 (99-193)||(34595099-34595193)
chr6 (82-193)||(426514-426625)
chr6 (82-215)||(18367785-18367916)
chr6 (93-193)||(853859-853959)
chr6 (158-196)||(9911525-9911563)
chr6 (158-196)||(10770671-10770709)
chr6 (82-215)||(5970087-5970213)
chr6 (114-193)||(28152079-28152157)
chr6 (158-198)||(31384944-31384984)
chr6 (158-193)||(4877967-4878002)
chr6 (158-196)||(9522915-9522953)
chr6 (114-193)||(17841589-17841668)
chr6 (158-192)||(24645505-24645539)
chr6 (158-215)||(8714004-8714060)
chr6 (82-127)||(10294055-10294100)
chr6 (82-196)||(21395305-21395418)
chr6 (160-193)||(28715321-28715354)
chr6 (79-119)||(4118407-4118447)
chr6 (93-137)||(10649287-10649331)
chr6 (87-127)||(28715256-28715296)
chr6 (84-124)||(31673555-31673595)
[»] chr5 (26 HSPs)
chr5 (82-217)||(21522698-21522832)
chr5 (82-217)||(21533264-21533398)
chr5 (83-196)||(13287396-13287509)
chr5 (77-196)||(19579644-19579763)
chr5 (82-193)||(15382425-15382538)
chr5 (91-193)||(21191056-21191158)
chr5 (93-196)||(37328841-37328944)
chr5 (82-191)||(17177025-17177134)
chr5 (88-217)||(21541984-21542112)
chr5 (93-193)||(6247581-6247681)
chr5 (93-150)||(22013373-22013430)
chr5 (82-186)||(6326304-6326408)
chr5 (82-137)||(41995419-41995474)
chr5 (158-196)||(12199954-12199992)
chr5 (82-127)||(6770491-6770536)
chr5 (83-123)||(20683330-20683370)
chr5 (158-214)||(39698565-39698620)
chr5 (117-217)||(12641657-12641756)
chr5 (158-193)||(15884012-15884047)
chr5 (158-217)||(30183573-30183631)
chr5 (93-127)||(19820460-19820494)
chr5 (158-192)||(21351906-21351940)
chr5 (114-193)||(21576745-21576824)
chr5 (82-124)||(23016060-23016102)
chr5 (114-188)||(14674249-14674323)
chr5 (99-127)||(41558749-41558777)
[»] chr4 (21 HSPs)
chr4 (82-193)||(23292986-23293097)
chr4 (79-196)||(27706174-27706291)
chr4 (82-196)||(19482616-19482730)
chr4 (77-150)||(20633428-20633501)
chr4 (82-127)||(28470345-28470390)
chr4 (82-217)||(30982855-30982986)
chr4 (87-192)||(35157986-35158091)
chr4 (77-193)||(12895274-12895390)
chr4 (82-217)||(847899-848033)
chr4 (82-127)||(5111593-5111638)
chr4 (99-193)||(21945468-21945562)
chr4 (107-193)||(12797338-12797423)
chr4 (120-196)||(11596349-11596425)
chr4 (158-217)||(24613678-24613736)
chr4 (160-195)||(30298973-30299008)
chr4 (160-195)||(30327841-30327876)
chr4 (158-193)||(42640553-42640588)
chr4 (82-127)||(4157106-4157151)
chr4 (158-215)||(4383391-4383447)
chr4 (158-191)||(29205468-29205501)
chr4 (161-193)||(16073421-16073453)
[»] chr3 (33 HSPs)
chr3 (96-193)||(55401037-55401134)
chr3 (99-195)||(28917966-28918062)
chr3 (82-217)||(15796271-15796405)
chr3 (82-217)||(750595-750730)
chr3 (82-193)||(10335286-10335397)
chr3 (82-193)||(16000016-16000127)
chr3 (82-196)||(3164022-3164136)
chr3 (112-217)||(14216870-14216974)
chr3 (112-217)||(14222999-14223103)
chr3 (158-193)||(8593161-8593196)
chr3 (77-124)||(14027958-14028005)
chr3 (158-217)||(14209137-14209195)
chr3 (82-187)||(35994744-35994848)
chr3 (158-192)||(3865698-3865732)
chr3 (82-124)||(14747515-14747557)
chr3 (158-212)||(28812539-28812592)
chr3 (82-192)||(10268487-10268597)
chr3 (158-195)||(21256984-21257021)
chr3 (99-217)||(41961627-41961744)
chr3 (93-193)||(8383216-8383316)
chr3 (82-137)||(24205097-24205152)
chr3 (158-193)||(25775533-25775568)
chr3 (82-124)||(10318109-10318151)
chr3 (158-196)||(27505270-27505308)
chr3 (158-196)||(34185120-34185158)
chr3 (158-196)||(39756260-39756298)
chr3 (158-196)||(49651783-49651821)
chr3 (86-196)||(4990964-4991074)
chr3 (82-127)||(7171450-7171495)
chr3 (158-194)||(1509563-1509599)
chr3 (93-121)||(8842289-8842317)
chr3 (158-190)||(26508134-26508166)
chr3 (158-194)||(34910341-34910377)
[»] scaffold0652 (1 HSPs)
scaffold0652 (82-193)||(462-573)
[»] chr2 (22 HSPs)
chr2 (93-195)||(20539672-20539774)
chr2 (90-196)||(36756341-36756447)
chr2 (102-193)||(18421931-18422022)
chr2 (96-193)||(19536397-19536495)
chr2 (82-193)||(2438719-2438827)
chr2 (93-189)||(6940214-6940310)
chr2 (160-215)||(11223842-11223896)
chr2 (114-193)||(37558957-37559036)
chr2 (86-196)||(15657816-15657926)
chr2 (82-127)||(44860276-44860321)
chr2 (94-193)||(21624226-21624326)
chr2 (158-217)||(30717507-30717565)
chr2 (158-196)||(974771-974809)
chr2 (162-212)||(4882678-4882727)
chr2 (90-136)||(11670711-11670757)
chr2 (158-196)||(23058439-23058477)
chr2 (82-124)||(26769465-26769507)
chr2 (158-196)||(33153448-33153486)
chr2 (82-192)||(18276469-18276579)
chr2 (118-196)||(37419727-37419805)
chr2 (76-124)||(1886939-1886987)
chr2 (160-196)||(12668420-12668456)
[»] scaffold0223 (1 HSPs)
scaffold0223 (96-196)||(20134-20234)
[»] scaffold0053 (1 HSPs)
scaffold0053 (82-193)||(8746-8857)
[»] scaffold0027 (1 HSPs)
scaffold0027 (82-193)||(46630-46741)
[»] scaffold0008 (1 HSPs)
scaffold0008 (90-217)||(263349-263475)
[»] scaffold0003 (1 HSPs)
scaffold0003 (99-217)||(241559-241676)
[»] scaffold0122 (1 HSPs)
scaffold0122 (99-196)||(8631-8728)
[»] scaffold0306 (1 HSPs)
scaffold0306 (93-193)||(13359-13459)
[»] scaffold0152 (1 HSPs)
scaffold0152 (93-193)||(21868-21968)
[»] scaffold0021 (1 HSPs)
scaffold0021 (82-190)||(130430-130538)
[»] scaffold0025 (1 HSPs)
scaffold0025 (158-196)||(23794-23832)
[»] scaffold0136 (1 HSPs)
scaffold0136 (158-215)||(3828-3884)
[»] scaffold0475 (1 HSPs)
scaffold0475 (82-137)||(3264-3319)
[»] scaffold0116 (1 HSPs)
scaffold0116 (82-137)||(9846-9901)
[»] scaffold0450 (1 HSPs)
scaffold0450 (158-196)||(8632-8670)
[»] scaffold0171 (1 HSPs)
scaffold0171 (158-196)||(23444-23482)
[»] scaffold0103 (1 HSPs)
scaffold0103 (114-185)||(51791-51862)
[»] scaffold0004 (1 HSPs)
scaffold0004 (158-192)||(123652-123686)
[»] scaffold0083 (1 HSPs)
scaffold0083 (160-193)||(45530-45563)
[»] scaffold0036 (1 HSPs)
scaffold0036 (158-215)||(9726-9782)
[»] scaffold0007 (1 HSPs)
scaffold0007 (77-150)||(225311-225384)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 31694885 - 31694707
Alignment:
Q  18 ggtggtgttatcgaaaatggctataggtgctcattcttgttttgacaagaatgtttgttgctacgaagcacggatacggatacggacaccggatacgaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||    
T  31694885 ggtggtgttatcgaaaatggctataggtgctcattcttgttttgacaagaatgtttggtggtatgaagcacggatacggatacggacaccggacacgaca 31694786  T
Q  118 cggacactgatacgtcgacatagccaataattt--nnnnnnntcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
      |||||||||||||||||||||| ||||||||         |||||||||||||||||||||||||||||||||||||||    
T  31694785 --gacactgatacgtcgacatagctaataatttgaaaaaaaatcacataattcagtataattacaagtgtcggtgtcgtgt 31694707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 1486820 - 1486706
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||| ||||||||| ||||| ||||||||||||||||| ||||| |||  |||| ||| ||||||||       |||||||||||||| |||||| ||    
T  1486820 gaagcatggatacggacacggataccggatacgacacggatactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattataa 1486721  T
Q  182 gtgtcggtgtcgtgt 196  Q
    |||||||||||||||    
T  1486720 gtgtcggtgtcgtgt 1486706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 38078772 - 38078661
Alignment:
Q  77 gctacgaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataat 176  Q
    |||| |||||||||||||||| |||||||||||| ||||     ||||||| ||||||||| ||| ||||||||       |||||||||||| | ||||    
T  38078772 gctatgaagcacggatacggacacggacaccggacacga-----acactgacacgtcgacacagctaataatttgaaaaaatcacataattcaatgtaat 38078678  T
Q  177 tacaagtgtcggtgtcg 193  Q
    |||||||||||||||||    
T  38078677 tacaagtgtcggtgtcg 38078661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 6612282 - 6612168
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    ||||||| |||||||| ||| |||||||| |||||||||||| ||| ||| ||| | ||  ||||||||       | |||||||||||| |||||||||    
T  6612282 gaagcacagatacggacacgaacaccggacacgacacggacaatgacacgccgatacagttaataatttgaaaaaattacataattcagtgtaattacaa 6612183  T
Q  182 gtgtcggtgtcgtgt 196  Q
    |||||||||||||||    
T  6612182 gtgtcggtgtcgtgt 6612168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 398876 - 398780
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataatta 178  Q
    ||||||||||||||||  ||||||||||| |||||||||||||||| ||| |||||  || ||||||||       |||||||||||||| ||||||    
T  398876 gaagcacggatacggacgcggacaccggacacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaatta 398780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 18471241 - 18471355
Alignment:
Q  77 gctacgaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnn--tcacataattcagtata 174  Q
    |||| ||||||| |||| ||| ||||| | ||||||||||||||||| |||  |||||||| ||| ||||||||         |||||||||||||||||    
T  18471241 gctatgaagcacagatatggacacggatatcggatacgacacggacaatgacccgtcgacacagctaataatttgaaaaaaaatcacataattcagtata 18471340  T
Q  175 attacaagtgtcggt 189  Q
    |||||||||||||||    
T  18471341 attacaagtgtcggt 18471355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 42359560 - 42359449
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||||| ||| |||||| | || ||||||||||||| |||  |||| | | ||||||||       ||||| |||||||| |||||||||    
T  42359560 gaagcacggatacggacacgaacaccgtacacaacacggacactgacacgctgacacatctaataatttgaaaaaatcacaaaattcagtgtaattacaa 42359461  T
Q  182 gtgtcggtgtcg 193  Q
    ||||||||||||    
T  42359460 gtgtcggtgtcg 42359449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 10577852 - 10577791
Alignment:
Q  76 tgctacgaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgaca 137  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||| || ||| |||||    
T  10577852 tgctatgaagcacggatacggacacggacaccggacacgacacggacaccgacacgccgaca 10577791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 47989521 - 47989577
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgacac 215  Q
    |||||||||||||| ||||||||||||||||||||||||  |||||| ||||||||||    
T  47989521 tcacataattcagtgtaattacaagtgtcggtgtcgtgt-cggtgtcggacacgacac 47989577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 48040568 - 48040505
Alignment:
Q  87 acggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataattt 150  Q
    ||||||| |||||||||||||||| |||||||||||||||| ||| ||||| ||  ||||||||    
T  48040568 acggatatggatacggacaccggacacgacacggacactgacacgccgacacagataataattt 48040505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 24577221 - 24577183
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  24577221 tcacataattcagtgtaattacaagtgtcggtgtcgtgt 24577183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 193
Target Start/End: Original strand, 18337353 - 18337388
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||||| |||||||||||||||||||||    
T  18337353 tcacataattcagtgtaattacaagtgtcggtgtcg 18337388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 218
Target Start/End: Complemental strand, 18556535 - 18556432
Alignment:
Q  114 gacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgac 213  Q
    |||||||||||||| ||| ||||| ||| ||||||||       |||||||||| | | ||||||||||| | ||||||||| | |||||||||| ||||    
T  18556535 gacacggacactgacacgccgacacagctaataatttgaaaatatcacataatttaatgtaattacaagtattggtgtcgtg-acggtgtcagacccgac 18556437  T
Q  214 acgta 218  Q
    |||||    
T  18556436 acgta 18556432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 193
Target Start/End: Original strand, 51410049 - 51410084
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||||| |||||||||||||||||||||    
T  51410049 tcacataattcagtgtaattacaagtgtcggtgtcg 51410084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 113323 - 113361
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  113323 tcacataattcagtgtaattacaagtgtaggtgtcgtgt 113361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 1705027 - 1704989
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  1705027 tcacataattcagggtaattacaagtgtcggtgtcgtgt 1704989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 192
Target Start/End: Original strand, 1815281 - 1815315
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtc 192  Q
    |||||||||||||| ||||||||||||||||||||    
T  1815281 tcacataattcagtgtaattacaagtgtcggtgtc 1815315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 3490495 - 3490453
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacac 124  Q
    ||||||||||||||||||| ||||||||| ||||||| |||||    
T  3490495 gaagcacggatacggatacagacaccggacacgacactgacac 3490453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 5927440 - 5927406
Alignment:
Q  93 acggatacggacaccggatacgacacggacactga 127  Q
    |||||||||||||||||| ||||||||||||||||    
T  5927440 acggatacggacaccggacacgacacggacactga 5927406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 5944307 - 5944345
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  5944307 tcacataattcagtgtaattataagtgtcggtgtcgtgt 5944345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 6332694 - 6332732
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  6332694 tcacataattcagtgtaattacaagtatcggtgtcgtgt 6332732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 16297394 - 16297328
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataat 148  Q
    |||||||||||||||| | ||||| |||| |||| ||||| ||||| ||||||||| ||| ||||||    
T  16297394 gaagcacggatacggacatggacatcggacacgatacggatactgacacgtcgacacagcaaataat 16297328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 192
Target Start/End: Complemental strand, 40258968 - 40258934
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtc 192  Q
    |||||||||||||| ||||||||||||||||||||    
T  40258968 tcacataattcagtgtaattacaagtgtcggtgtc 40258934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 41597581 - 41597539
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacac 124  Q
    ||||||||||||||||||||||||||  | |||||||||||||    
T  41597581 gaagcacggatacggatacggacaccaaacacgacacggacac 41597539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 46348462 - 46348383
Alignment:
Q  114 gacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||||| ||| ||||| ||| ||||||||       ||| |||||| ||| |||||||||||||||||||||    
T  46348462 gacacggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtcg 46348383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 159 - 196
Target Start/End: Original strand, 2218264 - 2218301
Alignment:
Q  159 cacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  2218264 cacataatttagtgtaattacaagtgtcggtgtcgtgt 2218301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 196
Target Start/End: Complemental strand, 5376587 - 5376497
Alignment:
Q  106 ccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    ||||| |||||||||||||| | ||| |||||  || ||||||||       | |||||||||||| |||||| |||||||||||||||||    
T  5376587 ccggacacgacacggacactaacacgccgacaccgctaataatttaagaaaataacataattcagtgtaattaaaagtgtcggtgtcgtgt 5376497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 19058889 - 19058856
Alignment:
Q  160 acataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||| |||||||||||||||||||||    
T  19058889 acataattcagtgtaattacaagtgtcggtgtcg 19058856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 44482254 - 44482310
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgacac 215  Q
    |||||||||||||| |||||| | |||||||||||||||  |||||| ||||||||||    
T  44482254 tcacataattcagtgtaattatatgtgtcggtgtcgtgt-cggtgtcggacacgacac 44482310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Complemental strand, 24334737 - 24334705
Alignment:
Q  161 cataattcagtataattacaagtgtcggtgtcg 193  Q
    ||||||||||| |||||||||||||||||||||    
T  24334737 cataattcagtgtaattacaagtgtcggtgtcg 24334705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 30173795 - 30173759
Alignment:
Q  160 acataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  30173795 acataactcagtgtaattacaagtgtcggtgtcgtgt 30173759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 190
Target Start/End: Original strand, 52284731 - 52284759
Alignment:
Q  162 ataattcagtataattacaagtgtcggtg 190  Q
    |||||||||||||||||||||||||||||    
T  52284731 ataattcagtataattacaagtgtcggtg 52284759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 24339596 - 24339725
Alignment:
Q  88 cggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcg 187  Q
    ||||||||||||||||||||||| |||||| ||||| ||| ||| ||||| ||| ||||||||       |||||||||||||| |||||||||||||||    
T  24339596 cggatacggatacggacaccggacacgacatggacattgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcg 24339695  T
Q  188 gtgtcgtgtagggtgtcagacacgacacgta 218  Q
    |||||||||  |||||| |||||||||||||    
T  24339696 gtgtcgtgt-cggtgtcggacacgacacgta 24339725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 82 - 192
Target Start/End: Complemental strand, 11061187 - 11061077
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||||| ||||||| ||||||||||||||||||||| ||  ||||| ||| ||||||||       |||||||||| |||||||||||||    
T  11061187 gaagcacggatacggacacggacatcggatacgacacggacactgacacaccgacacagctaataatttgaaaaaatcacataatttagtataattacaa 11061088  T
Q  182 gtgtcggtgtc 192  Q
    |||||||||||    
T  11061087 gtgtcggtgtc 11061077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 27945000 - 27945103
Alignment:
Q  93 acggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtc 192  Q
    |||||||||||||||||| |||||||||||||||| ||| |||||   | ||||||||       | |||||||||||| ||||||||||||||||||||    
T  27945000 acggatacggacaccggacacgacacggacactgacacgccgacaccactaataatttgagaaaattacataattcagtgtaattacaagtgtcggtgtc 27945099  T
Q  193 gtgt 196  Q
    ||||    
T  27945100 gtgt 27945103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 5409947 - 5409833
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    ||||||||||||| || || |||||||||||||||| ||||||||| |||  || | ||| ||||||||       ||||||||||||||  ||||||||    
T  5409947 gaagcacggatacagacacagacaccggatacgacatggacactgacacgctgatacagctaataatttgaaaaaatcacataattcagtgcaattacaa 5409848  T
Q  182 gtgtcggtgtcgtgt 196  Q
    |||||||||||||||    
T  5409847 gtgtcggtgtcgtgt 5409833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 9778451 - 9778562
Alignment:
Q  77 gctacgaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataat 176  Q
    |||| |||||||||||||||| |||||||||||| ||||||||||||||        |||| |||  |||||||       |||||||||||||||||||    
T  9778451 gctatgaagcacggatacggacacggacaccggacacgacacggacact--------gacacagctgataatttgaaaaaatcacataattcagtataat 9778542  T
Q  177 tacaagtgtcggtgtcgtgt 196  Q
    ||||||||||||||||||||    
T  9778543 tacaagtgtcggtgtcgtgt 9778562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 86 - 196
Target Start/End: Original strand, 13770643 - 13770753
Alignment:
Q  86 cacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgt 185  Q
    |||||||| |||  |||||| |||| |||||||||||||||||||| ||||| ||| ||||||||       | |||||||||||| |||||||||||||    
T  13770643 cacggatatggactcggacatcggacacgacacggacactgatacgccgacacagctaataatttaaaaaaattacataattcagtgtaattacaagtgt 13770742  T
Q  186 cggtgtcgtgt 196  Q
    || ||||||||    
T  13770743 cgttgtcgtgt 13770753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 193
Target Start/End: Original strand, 26733253 - 26733363
Alignment:
Q  83 aagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaag 182  Q
    ||||||||| |||||||| |||||| || |||||||||||||||| |||||||||  || ||||||||       |||||||||||||| |||||| | |    
T  26733253 aagcacggaaacggataccgacaccagacacgacacggacactgacacgtcgacaccgctaataatttgacaaaatcacataattcagtctaattaaatg 26733352  T
Q  183 tgtcggtgtcg 193  Q
    |||||||||||    
T  26733353 tgtcggtgtcg 26733363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 25481850 - 25481961
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    ||||||||||||| || ||||||| |||| || ||| ||||| ||| ||| ||||| ||| ||||||||       |||||||||||||| |||||||||    
T  25481850 gaagcacggatacagacacggacatcggacacaacatggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaa 25481949  T
Q  182 gtgtcggtgtcg 193  Q
    |||| |||||||    
T  25481950 gtgttggtgtcg 25481961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 43027569 - 43027466
Alignment:
Q  93 acggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtc 192  Q
    |||||| ||||||| ||| |||||||||||||||| ||| ||||  ||| ||||||||       ||||||||| |||| ||| ||||||||||||||||    
T  43027569 acggatgcggacactggacacgacacggacactgacacggcgacccagctaataatttgaaaaaatcacataatgcagtgtaaatacaagtgtcggtgtc 43027470  T
Q  193 gtgt 196  Q
    ||||    
T  43027469 gtgt 43027466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 3991348 - 3991384
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgt 194  Q
    |||||||||||||||||||||||||||||||||||||    
T  3991348 tcacataattcagtataattacaagtgtcggtgtcgt 3991384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 26033496 - 26033438
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgacacgt 217  Q
    |||||||||||||| ||||||||||||||||| ||||||  ||||||||||| |||||||    
T  26033496 tcacataattcagtgtaattacaagtgtcggtctcgtgt-cggtgtcagacatgacacgt 26033438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 18039023 - 18039061
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  18039023 tcacataattcagtgtaattacaagtgtcggtgtcgtgt 18039061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 21560527 - 21560563
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgt 194  Q
    |||||||||||||| ||||||||||||||||||||||    
T  21560527 tcacataattcagtgtaattacaagtgtcggtgtcgt 21560563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 21141093 - 21141038
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgaca 137  Q
    |||||||||||||||| |||||||||| | ||||||||||| | || |||||||||    
T  21141093 gaagcacggatacggacacggacaccgtacacgacacggacgccgacacgtcgaca 21141038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 2334274 - 2334312
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  2334274 tcacataatttagtgtaattacaagtgtcggtgtcgtgt 2334312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 9408369 - 9408316
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacga 212  Q
    |||||||||| ||| |||||||||||||||||||||| |  ||||||||||||||    
T  9408369 tcacataatttagtgtaattacaagtgtcggtgtcgtat-cggtgtcagacacga 9408316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 124
Target Start/End: Complemental strand, 9408448 - 9408410
Alignment:
Q  86 cacggatacggatacggacaccggatacgacacggacac 124  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  9408448 cacggatacggacacggacaccgaatacgacacggacac 9408410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 196
Target Start/End: Complemental strand, 11272617 - 11272583
Alignment:
Q  162 ataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||| ||||||||||||||||||||||||    
T  11272617 ataattcagtgtaattacaagtgtcggtgtcgtgt 11272583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 32094055 - 32094017
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  32094055 tcacataattcagtgtaattacaaatgtcggtgtcgtgt 32094017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 7438730 - 7438786
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgacac 215  Q
    |||||||||||| | |||||||||||||||||||| |||  ||||||| |||||||||    
T  7438730 tcacataattcaatgtaattacaagtgtcggtgtcatgt-cggtgtcaaacacgacac 7438786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 21880178 - 21880211
Alignment:
Q  160 acataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||| |||||||||||||||||||||    
T  21880178 acataattcagtgtaattacaagtgtcggtgtcg 21880211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 77 - 214
Target Start/End: Original strand, 22651919 - 22652055
Alignment:
Q  77 gctacgaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataat 176  Q
    |||| |||| ||||||||||| || ||||||||| |||||||||||||||| ||| ||||| ||| ||||||||       |||||||||||| ||||||    
T  22651919 gctatgaagtacggatacggacactgacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcaatataat 22652018  T
Q  177 tacaagtgtcggtgtcgtgtagggtgtcagacacgaca 214  Q
    ||||||||||||||||||||  |||||| |||||||||    
T  22652019 tacaagtgtcggtgtcgtgt-cggtgtcggacacgaca 22652055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 82 - 213
Target Start/End: Complemental strand, 29510415 - 29510285
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    ||||||||||||| || | |||||||||| |||||||||||||||| ||| ||||| ||| ||||||||       ||||| ||||||||||||||||||    
T  29510415 gaagcacggatactgacatggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcacaaaattcagtataattacaa 29510316  T
Q  182 gtgtcggtgtcgtgtagggtgtcagacacgac 213  Q
    |||||||||| ||||  |||||| ||||||||    
T  29510315 gtgtcggtgtagtgt-cggtgtcggacacgac 29510285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 77 - 217
Target Start/End: Complemental strand, 2572172 - 2572033
Alignment:
Q  77 gctacgaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataat 176  Q
    |||| |||||| ||||||||| |||||||| ||| |||||||||| || || ||||||||| | | ||||||||       |||||||||| ||| ||||    
T  2572172 gctatgaagcatggatacggacacggacactggacacgacacggataccgacacgtcgacacacctaataatttgaaaaaatcacataatttagtgtaat 2572073  T
Q  177 tacaagtgtcggtgtcgtgtagggtgtcagacacgacacgt 217  Q
    ||||||||||||||||||||   ||||| ||||||||||||    
T  2572072 tacaagtgtcggtgtcgtgt-ctgtgtcggacacgacacgt 2572033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 24362319 - 24362199
Alignment:
Q  76 tgctacgaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataa 175  Q
    ||||| ||||||| ||||||||||||||||||||||||||||| ||||| || ||| |||||  || ||||||||       |||||||||||||| |||    
T  24362319 tgctatgaagcacagatacggatacggacaccggatacgacacagacaccgacacgccgacaccgctaataatttgagagaatcacataattcagtgtaa 24362220  T
Q  176 ttacaagtgtcggtgtcgtgt 196  Q
    ||| | |||||  ||||||||    
T  24362219 ttatatgtgtcaatgtcgtgt 24362199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 193
Target Start/End: Original strand, 20873042 - 20873128
Alignment:
Q  107 cggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcg 193  Q
    |||| |||||||||||||||| ||| ||||||||  ||||||||       |||||||||| ||| |||||||||||||||||||||    
T  20873042 cggacacgacacggacactgacacgccgacatagataataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcg 20873128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 3951640 - 3951598
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacac 124  Q
    |||||||||||||||| ||||||||| ||||||||||||||||    
T  3951640 gaagcacggatacggacacggacaccagatacgacacggacac 3951598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 25566865 - 25566903
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  25566865 tcacataattcagtgtaattacaagtgtcggtgtcgtgt 25566903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 926899 - 926854
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactga 127  Q
    |||||||||||||| | |||||||||||| ||||||||||||||||    
T  926899 gaagcacggatacgaacacggacaccggacacgacacggacactga 926854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 16642077 - 16642032
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactga 127  Q
    ||||||||||||||||||||||| ||||| ||||||| ||||||||    
T  16642077 gaagcacggatacggatacggacgccggacacgacacagacactga 16642032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 24413671 - 24413626
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactga 127  Q
    |||||||||||||||| ||||||||| || ||||||||||||||||    
T  24413671 gaagcacggatacggacacggacaccagacacgacacggacactga 24413626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 193
Target Start/End: Original strand, 4948676 - 4948711
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||||| |||||||||||||||||||||    
T  4948676 tcacataattcagtgtaattacaagtgtcggtgtcg 4948711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 196
Target Start/End: Complemental strand, 13437056 - 13436961
Alignment:
Q  101 ggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||| | |||| ||||||||| ||| ||||| ||| ||||||||       ||||||||||||   |||| |||||||||||||||||||    
T  13437056 ggacaccggacatgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcatggtaataacaagtgtcggtgtcgtgt 13436961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 15816164 - 15816107
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgacacg 216  Q
    |||||||||| ||| |||||| |||||||||||||||||  |||||| |||||||||||    
T  15816164 tcacataatttagtgtaattataagtgtcggtgtcgtgt-tggtgtcggacacgacacg 15816107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 21465374 - 21465416
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacac 124  Q
    |||| |||||||| ||||||||||||||| |||||||||||||    
T  21465374 gaaggacggatacagatacggacaccggacacgacacggacac 21465416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 43737924 - 43737882
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacac 124  Q
    ||||||||||||| || |||||||||||| |||||||||||||    
T  43737924 gaagcacggatacagacacggacaccggacacgacacggacac 43737882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 192
Target Start/End: Complemental strand, 4673528 - 4673426
Alignment:
Q  90 gatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggt 189  Q
    |||||||||||||||| |||| ||||||| |||||||| ||| ||||| ||  ||||||||       ||| | |||||||| ||||||||||| || ||    
T  4673528 gatacggatacggacatcggacacgacacagacactgacacgccgacacagataataatttgaaaaaatcataaaattcagtgtaattacaagtatcagt 4673429  T
Q  190 gtc 192  Q
    |||    
T  4673428 gtc 4673426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 192
Target Start/End: Complemental strand, 22197853 - 22197743
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||   || |||||||||||| ||||||| |||||| | ||| | ||| ||| ||||||||       |||||||||| ||| |||||||||    
T  22197853 gaagcacggatctagacacggacaccggacacgacacagacactaacacgccaacacagctaataatttgaaaaattcacataatttagtgtaattacaa 22197754  T
Q  182 gtgtcggtgtc 192  Q
    ||||| |||||    
T  22197753 gtgtcagtgtc 22197743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 24669459 - 24669492
Alignment:
Q  160 acataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||| |||||||||||||||||||||    
T  24669459 acataattcagtgtaattacaagtgtcggtgtcg 24669492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 40332164 - 40332197
Alignment:
Q  93 acggatacggacaccggatacgacacggacactg 126  Q
    |||||||||||||||||| |||||||||||||||    
T  40332164 acggatacggacaccggacacgacacggacactg 40332197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 40332215 - 40332248
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgt 191  Q
    |||||||||||||| |||||||||||||||||||    
T  40332215 tcacataattcagtgtaattacaagtgtcggtgt 40332248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 8342996 - 8343032
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgt 194  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  8342996 tcacataatttagtgtaattacaagtgtcggtgtcgt 8343032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 11927121 - 11927066
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgaca 214  Q
    |||||||||||||| |||||| | |||||||||||||||  ||||||| ||||||||    
T  11927121 tcacataattcagtgtaattatatgtgtcggtgtcgtgt-tggtgtcatacacgaca 11927066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 20785575 - 20785531
Alignment:
Q  77 gctacgaagcacggatacggatacggacaccggatacgacacgga 121  Q
    |||| |||||||||||||||| |||||||||| | ||||||||||    
T  20785575 gctatgaagcacggatacggacacggacaccgtacacgacacgga 20785531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 16766645 - 16766779
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||| ||||||||| |||||||||||| |||||| ||||||||| ||| ||||| ||| ||||||||       |||||||||||||| |||||||||    
T  16766645 gaagcatggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaa 16766744  T
Q  182 gtgtcggtgtcgtgtagggtgtcagacacgacacgt 217  Q
    |||||||||||||||  |||||| ||||| ||||||    
T  16766745 gtgtcggtgtcgtgt-cggtgtcggacacaacacgt 16766779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 9107481 - 9107367
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    ||||||||||||| || |||||||||||| |||||||||||||| | ||| ||||| ||| ||||||||       ||||| |||||||| |||||||||    
T  9107481 gaagcacggatactgacacggacaccggacacgacacggacactaacacgccgacacagctaataatttgaaaaaatcacaaaattcagtgtaattacaa 9107382  T
Q  182 gtgtcggtgtcgtgt 196  Q
    |||||||||||||||    
T  9107381 gtgtcggtgtcgtgt 9107367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 93 - 217
Target Start/End: Complemental strand, 8365619 - 8365496
Alignment:
Q  93 acggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtc 192  Q
    ||||||||||||||| || |||||||||||||||| ||| ||||| | | ||||||||       ||||||||||| || ||||||||||||||||||||    
T  8365619 acggatacggacaccagacacgacacggacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaattacaagtgtcggtgtc 8365520  T
Q  193 gtgtagggtgtcagacacgacacgt 217  Q
    ||||  ||| || ||||||||||||    
T  8365519 gtgt-cggtatcggacacgacacgt 8365496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 8777084 - 8776973
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||||| ||||||| |||| |||||||||||||||| ||| ||||| | | ||||||||       ||||| |||||||| |||||||||    
T  8777084 gaagcacggatacggacacggacaacggacacgacacggacactgacacgccgacacaactaataatttgaaaaaatcacaaaattcagtgtaattacaa 8776985  T
Q  182 gtgtcggtgtcg 193  Q
    |||| |||||||    
T  8776984 gtgttggtgtcg 8776973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 7938064 - 7938174
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||||| |||||||||||| |||||| ||||||||| ||| ||||| ||| ||||||||       ||| |||||| ||| |||||| ||    
T  7938064 gaagcacggatacggacacggacaccggacacgacatggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattataa 7938163  T
Q  182 gtgtcggtgtc 192  Q
    |||||||||||    
T  7938164 gtgtcggtgtc 7938174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 17435172 - 17435250
Alignment:
Q  107 cggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgt 185  Q
    ||||||||||||||||||||||||||||||||||| ||||||||       | |||||||||||| |||||||||||||    
T  17435172 cggatacgacacggacactgatacgtcgacatagctaataattttaaaaaattacataattcagtgtaattacaagtgt 17435250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 12696284 - 12696386
Alignment:
Q  93 acggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtc 192  Q
    |||||||||||||| ||| |||||||||||||||| ||| ||||| ||| ||||||||       | |||||||||||| |||||||||||||| |||||    
T  12696284 acggatacggacac-ggacacgacacggacactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaagtgtcagtgtc 12696382  T
Q  193 gtgt 196  Q
    ||||    
T  12696383 gtgt 12696386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 83 - 193
Target Start/End: Complemental strand, 7977940 - 7977830
Alignment:
Q  83 aagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaag 182  Q
    ||||||||||| ||| |||||||| ||| |||||| ||| ||||| ||| ||||| ||| ||||||||       | |||||||||||| ||||||||||    
T  7977940 aagcacggatatggacacggacactggacacgacatggatactgacacgccgacacagctaataatttgaaaaaattacataattcagtgtaattacaag 7977841  T
Q  183 tgtcggtgtcg 193  Q
    |||||||||||    
T  7977840 tgtcggtgtcg 7977830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 196
Target Start/End: Original strand, 9027126 - 9027240
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    ||||||| |||||||| |||||| ||||| |||||||||||||||| ||| |||||  || ||||||||       ||||||||||| || |||||| |     
T  9027126 gaagcaccgatacggacacggactccggacacgacacggacactgacacgccgacaccgctaataatttgagataatcacataattccgtgtaattatat 9027225  T
Q  182 gtgtcggtgtcgtgt 196  Q
    |||||||||||||||    
T  9027226 gtgtcggtgtcgtgt 9027240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 34595099 - 34595193
Alignment:
Q  99 acggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||| |||||||||||| ||| ||| ||||| | | ||||||||       |||||||||||||| |||||||||||||||||||||    
T  34595099 acggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 34595193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 426625 - 426514
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||| |||||| || ||||| |||||| |||||||||||||||| ||| ||||| ||  ||||||||       |||||||||| | | |||||||||    
T  426625 gaagcatggatacagacacggataccggacacgacacggacactgacacgccgacacagttaataatttgaaaaaatcacataattaaatgtaattacaa 426526  T
Q  182 gtgtcggtgtcg 193  Q
    ||||||||||||    
T  426525 gtgtcggtgtcg 426514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 215
Target Start/End: Original strand, 18367785 - 18367916
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||||| |||||||||||| |||||| |||||| || ||| ||||| ||| |||  |||       ||||| ||| |||| |||||| |     
T  18367785 gaagcacggatacggacacggacaccggacacgacatggacac-gacacgccgacacagctaatttttttagaaaatcacaaaatgcagtgtaattatat 18367883  T
Q  182 gtgtcggtgtcgtgtagggtgtcagacacgacac 215  Q
    |||||||||||||||  |||||||||||||||||    
T  18367884 gtgtcggtgtcgtgt-cggtgtcagacacgacac 18367916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 853959 - 853859
Alignment:
Q  93 acggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtc 192  Q
    |||||||||||||||||| ||||||||||  |||| ||| ||||| | | ||||||||       |||||||||| |||  |||||||||||||||||||    
T  853959 acggatacggacaccggacacgacacggatgctgacacgccgacacaactaataatttgaaaaaatcacataattaagtgcaattacaagtgtcggtgtc 853860  T
Q  193 g 193  Q
    |    
T  853859 g 853859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 9911563 - 9911525
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  9911563 tcacataattcagtgtaattacaagtgtcggtgtcgtgt 9911525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 10770709 - 10770671
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  10770709 tcacataattcagtgtaattacaagtgtcggtgtcgtgt 10770671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 215
Target Start/End: Complemental strand, 5970213 - 5970087
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    ||||||| |||||||| |||||||||||| | |||||||||||      ||||||| ||  ||||||||       |||||||||||||| |||||||||    
T  5970213 gaagcacagatacggacacggacaccggacatgacacggacac------gtcgacacagttaataatttgaaaaaatcacataattcagtgtaattacaa 5970120  T
Q  182 gtgtcggtgtcgtgtagggtgtcagacacgacac 215  Q
     ||| ||||||||||  |||||| ||||||||||    
T  5970119 atgtgggtgtcgtgt-cggtgtcggacacgacac 5970087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 28152079 - 28152157
Alignment:
Q  114 gacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||||| ||| ||||| ||| ||||||||       |||||||||||||| |||||||||||||||||||||    
T  28152079 gacacggacactgacacgccgacaaagctaataatttgaaaaa-tcacataattcagtgtaattacaagtgtcggtgtcg 28152157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 198
Target Start/End: Original strand, 31384944 - 31384984
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtag 198  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  31384944 tcacataattcagtgtaattacaagtgtcagtgtcgtgtag 31384984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 193
Target Start/End: Original strand, 4877967 - 4878002
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||| |||||||||||||||||||||||||    
T  4877967 tcacataattaagtataattacaagtgtcggtgtcg 4878002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 9522915 - 9522953
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  9522915 tcacataattcagtgtaattacaagtgtcggtgttgtgt 9522953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 17841668 - 17841589
Alignment:
Q  114 gacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||||| ||| ||||| ||| ||||||||       |||||||||| ||| |||||||||||| ||||||||    
T  17841668 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataatttagtgtaattacaagtgacggtgtcg 17841589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 192
Target Start/End: Original strand, 24645505 - 24645539
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtc 192  Q
    ||||||||||||||||| |||||||||||||||||    
T  24645505 tcacataattcagtatagttacaagtgtcggtgtc 24645539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 8714004 - 8714060
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgacac 215  Q
    |||||||||||||| ||||||||| ||| ||||||||||  |||||| ||||||||||    
T  8714004 tcacataattcagtgtaattacaaatgtgggtgtcgtgt-cggtgtcggacacgacac 8714060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 10294055 - 10294100
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactga 127  Q
    |||||||||||||||| ||| |||||||| |||||||||| |||||    
T  10294055 gaagcacggatacggacacgaacaccggacacgacacggatactga 10294100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 21395418 - 21395305
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    ||||||||||||| || || ||||||||||| |||| |||||| || ||| | |||  || ||||||||       | |||||||| ||| |||||||||    
T  21395418 gaagcacggatacagacacagacaccggatatgacatggacaccgacacgccaacaccgctaataatttgagaaaat-acataatttagtgtaattacaa 21395320  T
Q  182 gtgtcggtgtcgtgt 196  Q
    |||||||||||||||    
T  21395319 gtgtcggtgtcgtgt 21395305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 28715321 - 28715354
Alignment:
Q  160 acataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||| |||||||||||||||||||||    
T  28715321 acataattcagtgtaattacaagtgtcggtgtcg 28715354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 4118447 - 4118407
Alignment:
Q  79 tacgaagcacggatacggatacggacaccggatacgacacg 119  Q
    |||||||||| |||||||| |||||||||||| ||||||||    
T  4118447 tacgaagcactgatacggacacggacaccggacacgacacg 4118407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 10649287 - 10649331
Alignment:
Q  93 acggatacggacaccggatacgacacggacactgatacgtcgaca 137  Q
    ||||||||||||||||||||||||||  ||| ||||||| |||||    
T  10649287 acggatacggacaccggatacgacacaaacaatgatacgccgaca 10649331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 28715256 - 28715296
Alignment:
Q  87 acggatacggatacggacaccggatacgacacggacactga 127  Q
    ||||||||||| |||||||||||| |||| |||||||||||    
T  28715256 acggatacggacacggacaccggacacgatacggacactga 28715296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Complemental strand, 31673595 - 31673555
Alignment:
Q  84 agcacggatacggatacggacaccggatacgacacggacac 124  Q
    |||||||||||||| |||||||||||| ||| |||||||||    
T  31673595 agcacggatacggacacggacaccggacacggcacggacac 31673555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 21522698 - 21522832
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||||| |||| ||||||| |||||||||||||||| ||| ||||| ||| ||||||||       | |||||||||||| |||||||||    
T  21522698 gaagcacggatacggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaa 21522797  T
Q  182 gtgtcggtgtcgtgtagggtgtcagacacgacacgt 217  Q
     ||||||||||||||  |||||| ||||||||||||    
T  21522798 ttgtcggtgtcgtgt-cggtgtcggacacgacacgt 21522832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 21533264 - 21533398
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||||| |||| ||||||| |||||||||||||||| ||| ||||| ||| ||||||||       | |||||||||||| |||||||||    
T  21533264 gaagcacggatacggacacggtcaccggacacgacacggacactgacacgccgacacagctaataattttaaaaaataacataattcagtgtaattacaa 21533363  T
Q  182 gtgtcggtgtcgtgtagggtgtcagacacgacacgt 217  Q
     ||||||||||||||  |||||| ||||||||||||    
T  21533364 ttgtcggtgtcgtgt-cggtgtcggacacgacacgt 21533398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 83 - 196
Target Start/End: Complemental strand, 13287509 - 13287396
Alignment:
Q  83 aagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaag 182  Q
    ||||||||||||||| |||||||||||| |||||||||||||| | ||||||||| ||  ||||||||       |||||||||||||| ||| ||||||    
T  13287509 aagcacggatacggacacggacaccggacacgacacggacactaacacgtcgacacagataataatttgaaaaaatcacataattcagtgtaactacaag 13287410  T
Q  183 tgtcggtgtcgtgt 196  Q
    ||||||||||||||    
T  13287409 tgtcggtgtcgtgt 13287396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 19579644 - 19579763
Alignment:
Q  77 gctacgaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataat 176  Q
    |||| |||||||||||||| | || |||||||||||| ||||||||||||||||| ||||| ||| ||||||||       |||||||||| |||  |||    
T  19579644 gctatgaagcacggatacgtacaccgacaccggatacaacacggacactgatacgccgacacagctaataatttgagaaaatcacataatttagtgcaat 19579743  T
Q  177 tacaagtgtcggtgtcgtgt 196  Q
    ||||||||||||||||||||    
T  19579744 tacaagtgtcggtgtcgtgt 19579763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 15382425 - 15382538
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataattt--nnnnnnntcacataattcagtataattac 179  Q
    |||||||||||||||| |||||||||||| |||||||||||| ||| ||| ||||| ||| ||||||||         ||| ||||||||||||||||||    
T  15382425 gaagcacggatacggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaaaatcatataattcagtataattac 15382524  T
Q  180 aagtgtcggtgtcg 193  Q
    ||||||||||||||    
T  15382525 aagtgtcggtgtcg 15382538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 21191158 - 21191056
Alignment:
Q  91 atacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtg 190  Q
    ||||||| || ||||||||| |||||||||||||||| | | ||||| ||| ||||||||       |||||||||||||| ||||||||||||||||||    
T  21191158 atacggacactgacaccggacacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtg 21191059  T
Q  191 tcg 193  Q
    |||    
T  21191058 tcg 21191056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 196
Target Start/End: Complemental strand, 37328944 - 37328841
Alignment:
Q  93 acggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtc 192  Q
    ||||| |||||||||| | |||||||||||||||||||  ||||| ||| ||||||||       ||||| |||||||| |||||||| |||||||||||    
T  37328944 acggacacggacaccgaacacgacacggacactgatacaccgacacagcaaataatttgtaaaaatcacaaaattcagtgtaattacatgtgtcggtgtc 37328845  T
Q  193 gtgt 196  Q
    ||||    
T  37328844 gtgt 37328841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 191
Target Start/End: Complemental strand, 17177134 - 17177025
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||||| || |||||| |||||||| |||||||||||||| | ||| ||| ||||||||       ||| | |||||| | |||||||||    
T  17177134 gaagcacggatacggacacagacaccagatacgactcggacactgatacgccaacacagctaataatttgaaaaaatcaaaaaattcattgtaattacaa 17177035  T
Q  182 gtgtcggtgt 191  Q
    ||||||||||    
T  17177034 gtgtcggtgt 17177025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 217
Target Start/End: Original strand, 21541984 - 21542112
Alignment:
Q  88 cggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcg 187  Q
    |||||||||| ||||||||| || ||||||| |||| ||| | | ||||| | | ||||||||       | |||||||||||| |||||||||||||||    
T  21541984 cggatacggacacggacaccagacacgacacagacattgacatgccgacacaactaataatttaaaaagataacataattcagtgtaattacaagtgtcg 21542083  T
Q  188 gtgtcgtgtagggtgtcagacacgacacgt 217  Q
    |||||||||  |||||| ||||||||||||    
T  21542084 gtgtcgtgt-cggtgtcggacacgacacgt 21542112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 6247581 - 6247681
Alignment:
Q  93 acggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtc 192  Q
    |||||| ||||||||||| |||| ||| ||||||| ||| ||||| | | ||||||||       |||||||||||||| ||||||||||||||||||||    
T  6247581 acggatgcggacaccggacacgatacgcacactgacacgccgacacatctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtc 6247680  T
Q  193 g 193  Q
    |    
T  6247681 g 6247681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 22013373 - 22013430
Alignment:
Q  93 acggatacggacaccggatacgacacggacactgatacgtcgacatagccaataattt 150  Q
    |||||||||||||||||| |||||||||||||||| ||| ||||| ||| ||||||||    
T  22013373 acggatacggacaccggacacgacacggacactgacacgccgacacagctaataattt 22013430  T

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Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 6326408 - 6326304
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||| ||||| ||| ||||| |||||| |||||||||||||||| ||| |||||| || | ||||||       | |||||||||||| |||||||||    
T  6326408 gaagcatggataaggacacggataccggacacgacacggacactgacacgccgacatcgctagtaatttgagaaaattacataattcagtgtaattacaa 6326309  T
Q  182 gtgtc 186  Q
    |||||    
T  6326308 gtgtc 6326304  T

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Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 41995419 - 41995474
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgaca 137  Q
    |||||||||||||||| |||||||| ||||||||||| |||||||| ||| |||||    
T  41995419 gaagcacggatacggacacggacactggatacgacacagacactgacacgccgaca 41995474  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 12199954 - 12199992
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  12199954 tcacataattcagtacaattacaagtgtcggtgtcgtgt 12199992  T

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Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 6770491 - 6770536
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactga 127  Q
    ||||||||||||||||||||||||||| | | ||||||||||||||    
T  6770491 gaagcacggatacggatacggacaccgaacatgacacggacactga 6770536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 20683330 - 20683370
Alignment:
Q  83 aagcacggatacggatacggacaccggatacgacacggaca 123  Q
    ||||||||||||||| |||||||||||| ||||||||||||    
T  20683330 aagcacggatacggacacggacaccggacacgacacggaca 20683370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 39698565 - 39698620
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgaca 214  Q
    |||||||||||||| |||||||||||||| |||||||||  |||||| |||||||||    
T  39698565 tcacataattcagtgtaattacaagtgtcagtgtcgtgt-cggtgtcggacacgaca 39698620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 217
Target Start/End: Original strand, 12641657 - 12641756
Alignment:
Q  117 acggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgacacg 216  Q
    ||||||| ||| ||||||||||||  ||||||||       |||||||||| ||||||||| || ||||| |||||||||  |||||||||||| |||||    
T  12641657 acggacaatgacacgtcgacatagttaataatttaaaaaaatcacataatttagtataattgcacgtgtcagtgtcgtgt-tggtgtcagacacaacacg 12641755  T

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Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 193
Target Start/End: Original strand, 15884012 - 15884047
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||||| |||||||||||||||||||||    
T  15884012 tcacataattcagtgtaattacaagtgtcggtgtcg 15884047  T

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Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 30183573 - 30183631
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgacacgt 217  Q
    |||||| |||| || ||||||||||||||||||||||||  ||| |||||||||||||||    
T  30183573 tcacattattcggtttaattacaagtgtcggtgtcgtgt-tggtatcagacacgacacgt 30183631  T

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Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 127
Target Start/End: Complemental strand, 19820494 - 19820460
Alignment:
Q  93 acggatacggacaccggatacgacacggacactga 127  Q
    |||||||||||||||||| ||||||||||||||||    
T  19820494 acggatacggacaccggacacgacacggacactga 19820460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 192
Target Start/End: Complemental strand, 21351940 - 21351906
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtc 192  Q
    |||||||||||||| ||||||||||||||||||||    
T  21351940 tcacataattcagtgtaattacaagtgtcggtgtc 21351906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 21576824 - 21576745
Alignment:
Q  114 gacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||| ||||||||||| | ||| ||| ||||||||       |||||||||||||| ||||||||||||||| |||||    
T  21576824 gacacgaacactgatacgccaacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcgatgtcg 21576745  T

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Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 23016102 - 23016060
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacac 124  Q
    |||||||||||||||| |||||| ||||| |||||||||||||    
T  23016102 gaagcacggatacggacacggactccggacacgacacggacac 23016060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 114 - 188
Target Start/End: Original strand, 14674249 - 14674323
Alignment:
Q  114 gacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcgg 188  Q
    |||||||||||||| ||| ||||| ||| ||||||||       |||||||||| ||| ||||||||||||||||    
T  14674249 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataatttagtgtaattacaagtgtcgg 14674323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Complemental strand, 41558777 - 41558749
Alignment:
Q  99 acggacaccggatacgacacggacactga 127  Q
    |||||||||||||||||||||||||||||    
T  41558777 acggacaccggatacgacacggacactga 41558749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 23293097 - 23292986
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    ||||||| |||||||| |||||||||||| |||||||||||| ||| ||| ||||| ||| ||||||||       ||||||||||||||||||||||||    
T  23293097 gaagcacagatacggacacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtataattacaa 23292998  T
Q  182 gtgtcggtgtcg 193  Q
    ||||||||||||    
T  23292997 gtgtcggtgtcg 23292986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 27706291 - 27706174
Alignment:
Q  79 tacgaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataatta 178  Q
    |||| |||||||||||||| ||||||||| || |||||| ||||||||| ||||||||| |   ||||||||       |||||||||| ||| ||||||    
T  27706291 tacgtagcacggatacggacacggacaccagacacgacagggacactgacacgtcgacacaattaataatttaaaaaaatcacataatttagtgtaatta 27706192  T
Q  179 caagtgtcggtgtcgtgt 196  Q
    |||||||  |||||||||    
T  27706191 caagtgtgagtgtcgtgt 27706174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 196
Target Start/End: Original strand, 19482616 - 19482730
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||| | || |||||| || ||||||| |||||||| ||| ||||| | | ||||||||       ||||||||||| || |||||||||    
T  19482616 gaagcacggatacgaacacagacaccagacacgacacagacactgacacgccgacacaactaataatttgaaaatatcacataattcggtgtaattacaa 19482715  T
Q  182 gtgtcggtgtcgtgt 196  Q
    |||| ||||||||||    
T  19482716 gtgttggtgtcgtgt 19482730  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 20633428 - 20633501
Alignment:
Q  77 gctacgaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataattt 150  Q
    |||| |||||||||||||||| ||||||||| || |||| ||||||||||| |||||||||  || ||||||||    
T  20633428 gctatgaagcacggatacggacacggacaccagacacgatacggacactgacacgtcgacaccgctaataattt 20633501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 28470345 - 28470390
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactga 127  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||    
T  28470345 gaagcacggatacggatacggacaccggatatgacacagacactga 28470390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 30982986 - 30982855
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||| | | |||||||||||||||||||||||| || ||| |  |   || ||| ||||       ||||||| |||||| |||||| ||    
T  30982986 gaagcacggatacgaacatggacaccggatacgacacggacacagacacgccacc---gctaatgatttgagaaaatcacatatttcagtgtaattataa 30982890  T
Q  182 gtgtcggtgtcgtgtagggtgtcagacacgacacgt 217  Q
    |||||||||||||||  |||||||||||||||||||    
T  30982889 gtgtcggtgtcgtgt-cggtgtcagacacgacacgt 30982855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 192
Target Start/End: Complemental strand, 35158091 - 35157986
Alignment:
Q  87 acggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtc 186  Q
    ||||||||||| |||||||||||| || ||||||||||||| ||| ||||  | | ||||||||       |||||||||| ||| |||||| |||||||    
T  35158091 acggatacggacacggacaccggacacaacacggacactgacacgccgacgcaactaataatttggaaaaatcacataatttagtgtaattataagtgtc 35157992  T
Q  187 ggtgtc 192  Q
    ||||||    
T  35157991 ggtgtc 35157986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 12895390 - 12895274
Alignment:
Q  77 gctacgaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataat 176  Q
    |||| ||| ||| |||||||||||||||||||||||||||||| ||| ||| ||| ||||| |   ||||||||       ||||||||||  || ||||    
T  12895390 gctatgaaacacagatacggatacggacaccggatacgacacgaacaatgacacgccgacacaaataataatttgaaaaaatcacataattttgtgtaat 12895291  T
Q  177 tacaagtgtcggtgtcg 193  Q
    || ||||||||||||||    
T  12895290 tataagtgtcggtgtcg 12895274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 217
Target Start/End: Original strand, 847899 - 848033
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||||| | |||| ||||| ||||||| |||||||| ||| |||    || ||||||||       | |||||||||| |||||||||||    
T  847899 gaagcacggatacggacatggaccccggacacgacacagacactgacacgccgatgccgctaataatttgagaaaattacataattcactataattacaa 847998  T
Q  182 gtgtcggtgtcgtgtagggtgtcagacacgacacgt 217  Q
    ||||||||||| |||  |||||| ||||||| ||||    
T  847999 gtgtcggtgtcttgt-tggtgtcggacacgaaacgt 848033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 5111593 - 5111638
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactga 127  Q
    |||||||||||||||  ||||||||||||||||||| |||||||||    
T  5111593 gaagcacggatacgggcacggacaccggatacgacatggacactga 5111638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 21945468 - 21945562
Alignment:
Q  99 acggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||| | ||||| |||||||| | | ||||| ||| ||||||||       | |||||||||||| |||||||||||||||||||||    
T  21945468 acggacaccggacatgacacagacactgacatgccgacacagctaataatttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcg 21945562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 12797423 - 12797338
Alignment:
Q  107 cggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcg 193  Q
    ||||||||||||||||||||| ||| || || | | ||||||||       |||||||||||||| |||||||||||||||||||||    
T  12797423 cggatacgacacggacactgacacgccggcaaaactaataatttgaaaaa-tcacataattcagtgtaattacaagtgtcggtgtcg 12797338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 11596425 - 11596349
Alignment:
Q  120 gacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||| | ||| ||| ||||||||       |||||||||||||| ||||||||||||| ||||||||||    
T  11596425 gacactgatacgccaacaaagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtaggtgtcgtgt 11596349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 24613736 - 24613678
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgacacgt 217  Q
    |||||||||||| | ||| |||||||||||||||| |||  |||||||||||||||||||    
T  24613736 tcacataattcaatgtaagtacaagtgtcggtgtcatgt-cggtgtcagacacgacacgt 24613678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 30298973 - 30299008
Alignment:
Q  160 acataattcagtataattacaagtgtcggtgtcgtg 195  Q
    |||||||||||| |||||||||||||||||||||||    
T  30298973 acataattcagtgtaattacaagtgtcggtgtcgtg 30299008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 30327841 - 30327876
Alignment:
Q  160 acataattcagtataattacaagtgtcggtgtcgtg 195  Q
    |||||||||||| |||||||||||||||||||||||    
T  30327841 acataattcagtgtaattacaagtgtcggtgtcgtg 30327876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 193
Target Start/End: Original strand, 42640553 - 42640588
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||||| |||||||||||||||||||||    
T  42640553 tcacataattcagtgtaattacaagtgtcggtgtcg 42640588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 4157106 - 4157151
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactga 127  Q
    |||||||||||||||| ||||||||| || ||||||| ||||||||    
T  4157106 gaagcacggatacggacacggacaccagacacgacacagacactga 4157151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 4383391 - 4383447
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgacac 215  Q
    |||||||||||||| ||||||||| |||| |||||||||  ||||||| |||||||||    
T  4383391 tcacataattcagtgtaattacaaatgtcagtgtcgtgt-cggtgtcaaacacgacac 4383447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 191
Target Start/End: Original strand, 29205468 - 29205501
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgt 191  Q
    |||||||||||||| |||||||||||||||||||    
T  29205468 tcacataattcagtgtaattacaagtgtcggtgt 29205501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 193
Target Start/End: Original strand, 16073421 - 16073453
Alignment:
Q  161 cataattcagtataattacaagtgtcggtgtcg 193  Q
    ||||||||||| |||||||||||||||||||||    
T  16073421 cataattcagtgtaattacaagtgtcggtgtcg 16073453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 55401037 - 55401134
Alignment:
Q  96 gatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||||||||||||||||||||||||||| ||||| | | ||||||||       |||||||||| ||| |||||||||||||||||||||    
T  55401037 gatacggacaccggatacgacacggacactgatacgccgacacaactaataatttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcg 55401134  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 195
Target Start/End: Original strand, 28917966 - 28918062
Alignment:
Q  99 acggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcgtg 195  Q
    |||||||||||| |||||||||| ||||| ||| ||||||||| ||||||||       |||||||||||||| |||||||||||||||||||||||    
T  28917966 acggacaccggacacgacacggaaactgacacgccgacatagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtg 28918062  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 15796405 - 15796271
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||| ||| |||||||||||| |||||||||||| ||| ||| ||||| ||  ||||||||       ||| |||||||||| |||||||||    
T  15796405 gaagcacggatatggacacggacaccggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcatataattcagtgtaattacaa 15796306  T
Q  182 gtgtcggtgtcgtgtagggtgtcagacacgacacgt 217  Q
     ||||||||||||||| |||||| ||||| ||||||    
T  15796305 ttgtcggtgtcgtgta-ggtgtcggacacaacacgt 15796271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 82 - 217
Target Start/End: Complemental strand, 750730 - 750595
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacact-gatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattaca 180  Q
    |||||||||||||||| |||||||||||| |||||||||||||| || ||| ||||| | | ||||||||       |||||||||||  |  |||||||    
T  750730 gaagcacggatacggacacggacaccggacacgacacggacacttgacacggcgacacaactaataatttgaaaatatcacataattcgctgcaattaca 750631  T
Q  181 agtgtcggtgtcgtgtagggtgtcagacacgacacgt 217  Q
    ||||||||||||||||  ||| || ||||||||||||    
T  750630 agtgtcggtgtcgtgt-cggtatcggacacgacacgt 750595  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 10335397 - 10335286
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||| | |||||||||||| |||||||||||||||| ||| ||||| | | ||||||||       ||||||| || ||| ||| |||||    
T  10335397 gaagcacggatacgaacacggacaccggacacgacacggacactgacacgccgacacaactaataatttgaaaaagtcacatattttagtgtaaatacaa 10335298  T
Q  182 gtgtcggtgtcg 193  Q
    ||||||||||||    
T  10335297 gtgtcggtgtcg 10335286  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 16000127 - 16000016
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||||| |||||||||| | ||||||| |||||||| ||| ||||| | | ||||||||       | |||||||||||| ||| |||||    
T  16000127 gaagcacggatacggacacggacaccgaacacgacacagacactgacacgccgacacaactaataatttaaaaaaataacataattcagtgtaactacaa 16000028  T
Q  182 gtgtcggtgtcg 193  Q
    ||||||||||||    
T  16000027 gtgtcggtgtcg 16000016  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 196
Target Start/End: Complemental strand, 3164136 - 3164022
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    ||||||||||||| || |||||||||||| |||||||||||| ||  ||||||||| ||| ||||||||       |||||||||||||| |||  ||||    
T  3164136 gaagcacggatacagacacggacaccggacacgacacggacaatggcacgtcgacacagctaataatttgaaaaaatcacataattcagtgtaagaacaa 3164037  T
Q  182 gtgtcggtgtcgtgt 196  Q
    |||| | ||||||||    
T  3164036 gtgttgatgtcgtgt 3164022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 14216870 - 14216974
Alignment:
Q  112 acgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacg 211  Q
    |||||||||||||||| ||||||||| | | ||||||||       ||| |||||||||| |||||||||||||| |||||||||   ||||| ||||||    
T  14216870 acgacacggacactgacacgtcgacacaactaataattttaaaatatcatataattcagtgtaattacaagtgtccgtgtcgtgt-tagtgtcggacacg 14216968  T
Q  212 acacgt 217  Q
    ||||||    
T  14216969 acacgt 14216974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 14222999 - 14223103
Alignment:
Q  112 acgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacg 211  Q
    |||||||||||||||| ||||||||| | | ||||||||       ||| |||||||||| |||||||||||||| |||||||||   ||||| ||||||    
T  14222999 acgacacggacactgacacgtcgacacaactaataattttaaaatatcatataattcagtgtaattacaagtgtccgtgtcgtgt-tagtgtcggacacg 14223097  T
Q  212 acacgt 217  Q
    ||||||    
T  14223098 acacgt 14223103  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 193
Target Start/End: Original strand, 8593161 - 8593196
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcg 193  Q
    ||||||||||||||||||||||||||||||||||||    
T  8593161 tcacataattcagtataattacaagtgtcggtgtcg 8593196  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 14027958 - 14028005
Alignment:
Q  77 gctacgaagcacggatacggatacggacaccggatacgacacggacac 124  Q
    |||| |||||||||||||||| |||||||||||| |||||||||||||    
T  14027958 gctatgaagcacggatacggacacggacaccggacacgacacggacac 14028005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 217
Target Start/End: Original strand, 14209137 - 14209195
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgacacgt 217  Q
    |||||||||||||| |||||||||||||| |||||||||  |||||| ||||||||||||    
T  14209137 tcacataattcagtgtaattacaagtgtcagtgtcgtgt-cggtgtcggacacgacacgt 14209195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 187
Target Start/End: Complemental strand, 35994848 - 35994744
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||||| | |||||||||| |||||| ||||| ||| | | ||||| ||| ||||||||       |||||||||||||| |||||||||    
T  35994848 gaagcacggatacggacatggacaccggacacgacatggacaatgacaagccgacacagctaataattt-gaaaaatcacataattcagtgtaattacaa 35994750  T
Q  182 gtgtcg 187  Q
    ||||||    
T  35994749 gtgtcg 35994744  T

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Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 192
Target Start/End: Original strand, 3865698 - 3865732
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtc 192  Q
    |||||||||||||||||||||||||||||||||||    
T  3865698 tcacataattcagtataattacaagtgtcggtgtc 3865732  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 14747515 - 14747557
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacac 124  Q
    ||||||||||||||||||||||||||||| ||||||| |||||    
T  14747515 gaagcacggatacggatacggacaccggacacgacactgacac 14747557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 28812539 - 28812592
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacga 212  Q
    |||||||||||||| || |||||||||||||||||||||  ||||||||||||||    
T  28812539 tcacataattcagtgtagttacaagtgtcggtgtcgtgt-tggtgtcagacacga 28812592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 192
Target Start/End: Complemental strand, 10268597 - 10268487
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||| | ||||||| ||  ||||||| ||||||||| ||| ||||| ||  ||||||||       |||||||||| ||| |||||||||    
T  10268597 gaagcacggatacgaacacggacatcgattacgacatggacactgacacgccgacacagttaataatttgaaaaaatcacataatttagtgtaattacaa 10268498  T
Q  182 gtgtcggtgtc 192  Q
    ||||| |||||    
T  10268497 gtgtcagtgtc 10268487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 21257021 - 21256984
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtg 195  Q
    |||||||||||||||||||||||||||||||| |||||    
T  21257021 tcacataattcagtataattacaagtgtcggtatcgtg 21256984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 41961744 - 41961627
Alignment:
Q  99 acggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcgtgtag 198  Q
    |||||||||||| ||||||| |||||||| ||| || || | | ||||||||       |||||| |||| || ||||||||||||||||||||||||      
T  41961744 acggacaccggacacgacacagacactgacacgccgtcacaactaataatttgaaaatatcacattattcggtgtaattacaagtgtcggtgtcgtgt-c 41961646  T
Q  199 ggtgtcagacacgacacgt 217  Q
    ||| || ||||||||||||    
T  41961645 ggtatcggacacgacacgt 41961627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 8383216 - 8383316
Alignment:
Q  93 acggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtc 192  Q
    ||||| |||||||| ||| |||||||||||| ||| ||| |||||  || ||||||||       ||| |||||||||| |||||| |||||||||||||    
T  8383216 acggacacggacactggacacgacacggacattgacacgccgacaccgctaataatttgagaaaatcatataattcagtgtaattataagtgtcggtgtc 8383315  T
Q  193 g 193  Q
    |    
T  8383316 g 8383316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 24205152 - 24205097
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgaca 137  Q
    |||||||||| || || |||||||||||| |||||||||||||||| ||| |||||    
T  24205152 gaagcacggacacagacacggacaccggacacgacacggacactgacacgccgaca 24205097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 193
Target Start/End: Original strand, 25775533 - 25775568
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||||| |||||||||||||||||||||    
T  25775533 tcacataattcagtgtaattacaagtgtcggtgtcg 25775568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Complemental strand, 10318151 - 10318109
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacac 124  Q
    |||||||||||||| | |||||||||||| |||||||||||||    
T  10318151 gaagcacggatacgaacacggacaccggacacgacacggacac 10318109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 27505270 - 27505308
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  27505270 tcacataattaagtgtaattacaagtgtcggtgtcgtgt 27505308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 34185158 - 34185120
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  34185158 tcacacaattcagtgtaattacaagtgtcggtgtcgtgt 34185120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 39756260 - 39756298
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  39756260 tcacataatttaatataattacaagtgtcggtgtcgtgt 39756298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 49651821 - 49651783
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||| | ||||||||||||||||||||||||    
T  49651821 tcacataattcactgtaattacaagtgtcggtgtcgtgt 49651783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 196
Target Start/End: Complemental strand, 4991074 - 4990964
Alignment:
Q  86 cacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgt 185  Q
    |||| ||||||| |||||||||| | |||||||||| ||||| ||  |||||  || |||| |||       | |||||||||||| |||||||||||||    
T  4991074 cacgtatacggacacggacaccgaacacgacacggagactgacactccgacaccgctaatagtttgagaaaattacataattcagtgtaattacaagtgt 4990975  T
Q  186 cggtgtcgtgt 196  Q
    ||| |||||||    
T  4990974 cggcgtcgtgt 4990964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 7171450 - 7171495
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactga 127  Q
    |||||||||||||||| || ||||||||| |||||||||| |||||    
T  7171450 gaagcacggatacggacacagacaccggacacgacacggatactga 7171495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 1509563 - 1509599
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgt 194  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  1509563 tcacataatttagtgtaattacaagtgtcggtgtcgt 1509599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 121
Target Start/End: Original strand, 8842289 - 8842317
Alignment:
Q  93 acggatacggacaccggatacgacacgga 121  Q
    |||||||||||||||||||||||||||||    
T  8842289 acggatacggacaccggatacgacacgga 8842317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 26508134 - 26508166
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtg 190  Q
    |||||||||||||| ||||||||||||||||||    
T  26508134 tcacataattcagtgtaattacaagtgtcggtg 26508166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 34910341 - 34910377
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgt 194  Q
    |||||||||||||| |||||||||| |||||||||||    
T  34910341 tcacataattcagtgtaattacaagagtcggtgtcgt 34910377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 573 - 462
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||||| |||||||||| | ||| |||||||||||||||| |||||  || ||||||||       ||||| |||||||| |||||||||    
T  573 gaagcacggatacggacacggacaccgaacacgccacggacactgatacgccgacactgctaataatttgaaaaaatcacaaaattcagtgtaattacaa 474  T
Q  182 gtgtcggtgtcg 193  Q
    ||||||||||||    
T  473 gtgtcggtgtcg 462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 93 - 195
Target Start/End: Complemental strand, 20539774 - 20539672
Alignment:
Q  93 acggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtc 192  Q
    |||||||||||||| ||| |||||||||||||||| ||||||||| ||| ||||||||       ||| |||||| ||| ||||||||||||||||||||    
T  20539774 acggatacggacactggacacgacacggacactgacacgtcgacacagctaataatttgaaaaaatcatataatttagtgtaattacaagtgtcggtgtc 20539675  T
Q  193 gtg 195  Q
    |||    
T  20539674 gtg 20539672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 196
Target Start/End: Complemental strand, 36756447 - 36756341
Alignment:
Q  90 gatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggt 189  Q
    |||||||| ||| ||| |||||||||||| |||||||| ||||||||| | | ||||||||       | |||||||||||| |||||| ||||||||||    
T  36756447 gatacggacacgaacatcggatacgacacagacactgacacgtcgacacaactaataatttgaagaaataacataattcagtgtaattataagtgtcggt 36756348  T
Q  190 gtcgtgt 196  Q
    |||||||    
T  36756347 gtcgtgt 36756341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 18421931 - 18422022
Alignment:
Q  102 gacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcg 193  Q
    |||| ||||||||||||||||||||| ||| ||||| |   ||||||||       |||||||||||||| |||||||||||||||||||||    
T  18421931 gacatcggatacgacacggacactgacacgccgacacaattaataatttaaaaatatcacataattcagtgtaattacaagtgtcggtgtcg 18422022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 19536495 - 19536397
Alignment:
Q  96 gatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnn-tcacataattcagtataattacaagtgtcggtgtcg 193  Q
    ||||||||||||||| |||||||||||| ||| ||| ||||| | | ||||||||        |||||||||||||| |||||||||||||||||||||    
T  19536495 gatacggacaccggacacgacacggacaatgacacgccgacacaactaataatttgaaaaaaatcacataattcagtgtaattacaagtgtcggtgtcg 19536397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 193
Target Start/End: Complemental strand, 2438827 - 2438719
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||||| ||| |||||||| |  |||||||||||||  ||  |||| ||| ||||||||       |||||||||||||| |||||||||    
T  2438827 gaagcacggatacggacacg-acaccggacaaaacacggacactga--cgctgacacagctaataatttcaaaaaatcacataattcagtgtaattacaa 2438731  T
Q  182 gtgtcggtgtcg 193  Q
    ||||||||||||    
T  2438730 gtgtcggtgtcg 2438719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 6940214 - 6940310
Alignment:
Q  93 acggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggt 189  Q
    ||||||||||||| |  |||||||||||||||||| ||| ||||| ||| ||||||||       | |||||||| ||| |||||||||||||||||    
T  6940214 acggatacggacatcaaatacgacacggacactgacacgccgacacagctaataattttaaaaagttacataattaagtgtaattacaagtgtcggt 6940310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 11223896 - 11223842
Alignment:
Q  160 acataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgacac 215  Q
    |||||||||||| |||||||||||||||||||| |||| |||||| ||||||||||    
T  11223896 acataattcagtgtaattacaagtgtcggtgtcatgta-ggtgtcggacacgacac 11223842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 37558957 - 37559036
Alignment:
Q  114 gacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||||| ||| ||||| ||| ||||||||       |||||||||||| | |||||||||||||||||||||    
T  37558957 gacacggacactgacacgccgacacagctaataatttgtaaaaatcacataattcaatgtaattacaagtgtcggtgtcg 37559036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 196
Target Start/End: Original strand, 15657816 - 15657926
Alignment:
Q  86 cacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgt 185  Q
    |||||| || || |||| ||||||| |||||||||||||| | ||| ||||  | | ||||||||       |||||||||||||| ||||||||| |||    
T  15657816 cacggacaccgacacggtcaccggacacgacacggacactaacacgccgactcaactaataatttgtaaaaatcacataattcagtgtaattacaaatgt 15657915  T
Q  186 cggtgtcgtgt 196  Q
    |||||||||||    
T  15657916 cggtgtcgtgt 15657926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 44860276 - 44860321
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactga 127  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||    
T  44860276 gaagcacggatacggatacgtacaccagacacgacacggacactga 44860321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 193
Target Start/End: Original strand, 21624226 - 21624326
Alignment:
Q  94 cggatacggacaccggatacgacacggacactgatacgtcgacatagccaataa-tttnnnnnnntcacataattcagtataattacaagtgtcggtgtc 192  Q
    ||||||||||||||| | ||||||| |||||||| ||| ||||| ||| ||||| |||       |  ||||||||||| ||||||||||||||||||||    
T  21624226 cggatacggacaccgaacacgacacagacactgacacgccgacacagctaataattttaaaaaaatagcataattcagtgtaattacaagtgtcggtgtc 21624325  T
Q  193 g 193  Q
    |    
T  21624326 g 21624326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 217
Target Start/End: Complemental strand, 30717565 - 30717507
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgacacgt 217  Q
    |||||||||||||| ||||||||||||||| ||||||||  | |||| ||||||||||||    
T  30717565 tcacataattcagtgtaattacaagtgtcgatgtcgtgt-cgttgtcggacacgacacgt 30717507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 974771 - 974809
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  974771 tcacattattcagtgtaattacaagtgtcggtgtcgtgt 974809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Complemental strand, 4882727 - 4882678
Alignment:
Q  162 ataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacga 212  Q
    |||||||||| ||||||||||||||| ||||||||  ||||||||||||||    
T  4882727 ataattcagtgtaattacaagtgtcgatgtcgtgt-cggtgtcagacacga 4882678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 136
Target Start/End: Original strand, 11670711 - 11670757
Alignment:
Q  90 gatacggatacggacaccggatacgacacggacactgatacgtcgac 136  Q
    ||||||||||||||||||| ||||||||  |||||||| ||||||||    
T  11670711 gatacggatacggacaccgaatacgacatagacactgacacgtcgac 11670757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 23058477 - 23058439
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  23058477 tcacataatccagtgtaattacaagtgtcggtgtcgtgt 23058439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 26769465 - 26769507
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacac 124  Q
    |||||||||||||||| |||||||||||| ||||||| |||||    
T  26769465 gaagcacggatacggacacggacaccggacacgacacagacac 26769507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 33153448 - 33153486
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  33153448 tcacataattcagtgtaattacaagtgtccgtgtcgtgt 33153486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 18276469 - 18276579
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    ||||||||||||| || |||||||||||| |||| || |||||||||| | |||||  || ||||||||       |||| ||||||||| ||||||       
T  18276469 gaagcacggatacagacacggacaccggacacgatacagacactgatatgccgacaccgctaataatttgagaaaatcacttaattcagtgtaattatgt 18276568  T
Q  182 gtgtcggtgtc 192  Q
    |||||||||||    
T  18276569 gtgtcggtgtc 18276579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 196
Target Start/End: Original strand, 37419727 - 37419805
Alignment:
Q  118 cggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||| ||| |||||| || ||||||||       ||||| |||||||| |||||||||||| |||||||||||    
T  37419727 cggacactgacacgccgacatggcaaataatttgaaaaaatcacaaaattcagtgtaattacaagtgccggtgtcgtgt 37419805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 1886987 - 1886939
Alignment:
Q  76 tgctacgaagcacggatacggatacggacaccggatacgacacggacac 124  Q
    ||||| ||||||||||||| || |||||||| |||||||||| ||||||    
T  1886987 tgctatgaagcacggatacagacacggacactggatacgacatggacac 1886939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 196
Target Start/End: Complemental strand, 12668456 - 12668420
Alignment:
Q  160 acataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||| |||||| |||||||||||||||||    
T  12668456 acataattcagtgtaattataagtgtcggtgtcgtgt 12668420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 20134 - 20234
Alignment:
Q  96 gatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcgtg 195  Q
    ||||||||||||||| |||||||||||| ||| ||| ||||| ||| ||||||||       |||||||||||||| |||||||||||||| ||||||||    
T  20134 gatacggacaccggacacgacacggacaatgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtg 20233  T
Q  196 t 196  Q
    |    
T  20234 t 20234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 8746 - 8857
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||| ||||||||| |||||||||||| |||||||||||||||| ||| ||||| ||| ||||||||       ||| || ||| ||| |||||||||    
T  8746 gaagcatggatacggacacggacaccggacacgacacggacactgacacgccgacacagctaataatttgaaaaaatcatattatttagtgtaattacaa 8845  T
Q  182 gtgtcggtgtcg 193  Q
    ||||||||||||    
T  8846 gtgtcggtgtcg 8857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 82 - 193
Target Start/End: Original strand, 46630 - 46741
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||||||||||||| ||||||| |||| |||||||||||| ||| ||| ||||| ||  ||||||||       |||||||||||||| |||||||||    
T  46630 gaagcacggatacggacacggacatcggacacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcacataattcagtgtaattacaa 46729  T
Q  182 gtgtcggtgtcg 193  Q
     |||||||||||    
T  46730 atgtcggtgtcg 46741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 90 - 217
Target Start/End: Complemental strand, 263475 - 263349
Alignment:
Q  90 gatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggt 189  Q
    |||||||| |||||||| |||||||||||||||||||| | ||| |||  || ||||||||        ||||||||||||| |||||| ||||||| ||    
T  263475 gatacggacacggacactggatacgacacggacactgacatgtcaacactgctaataatttgagaaaaccacataattcagtgtaattataagtgtcagt 263376  T
Q  190 gtcgtgtagggtgtcagacacgacacgt 217  Q
    |||||||  |||||||||||||||||||    
T  263375 gtcgtgt-cggtgtcagacacgacacgt 263349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 241559 - 241676
Alignment:
Q  99 acggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcgtgtag 198  Q
    |||||||||||| |||||||||||||||| ||| ||||| ||| ||||||||       |||||||||| ||| ||||||  ||||||||||||||||      
T  241559 acggacaccggacacgacacggacactgacacgccgacacagctaataatttggaaaaatcacataatttagtgtaattatgagtgtcggtgtcgtgt-t 241657  T
Q  199 ggtgtcagacacgacacgt 217  Q
    |||||| ||||||||||||    
T  241658 ggtgtcggacacgacacgt 241676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 196
Target Start/End: Original strand, 8631 - 8728
Alignment:
Q  99 acggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||| |||||| ||||||||| |||||||||   | ||||||||       ||||||| ||||||||||||| |||||||||||||||||    
T  8631 acggacaccggacacgacatggacactgacacgtcgacacttctaataatttaggaaaatcacatagttcagtataattataagtgtcggtgtcgtgt 8728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 13359 - 13459
Alignment:
Q  93 acggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtc 192  Q
    |||||||||||||||||| | |||||||||||||| ||| ||||| | | ||||||||       ||||||||||||||  ||||||||| |||||||||    
T  13359 acggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcagtgcaattacaagggtcggtgtc 13458  T
Q  193 g 193  Q
    |    
T  13459 g 13459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 21968 - 21868
Alignment:
Q  93 acggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgtcggtgtc 192  Q
    |||||||||||||||||| | |||||||||||||| ||| ||||| | | ||||||||       ||||||||||||||  ||||||||| |||||||||    
T  21968 acggatacggacaccggagatgacacggacactgacacgccgacacaactaataatttgagaaaatcacataattcagtgcaattacaagggtcggtgtc 21869  T
Q  193 g 193  Q
    |    
T  21868 g 21868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 130430 - 130538
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaa 181  Q
    |||||| ||||||||| |||||||||||| |||||||||||| ||| | | ||||| ||  |||| |||       |||||||||||||| |||||||||    
T  130430 gaagcatggatacggacacggacaccggacacgacacggacaatgacaagccgacacagttaatagtttgaaaaaatcacataattcagtgtaattacaa 130529  T
Q  182 gtgtcggtg 190  Q
    |||||||||    
T  130530 gtgtcggtg 130538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 23794 - 23832
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  23794 tcacataattcagtgtaattacaagtgtcggtgtcgtgt 23832  T

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Target: scaffold0136 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 3884 - 3828
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgacac 215  Q
    |||||||||||||| |||||||||||||| |||||||||  |||||| ||||||||||    
T  3884 tcacataattcagtgtaattacaagtgtcagtgtcgtgt-tggtgtcggacacgacac 3828  T

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Target: scaffold0475 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 3264 - 3319
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgaca 137  Q
    ||||||||||||  || |||||||||||| |||||||||| ||||| |||||||||    
T  3264 gaagcacggatatagacacggacaccggacacgacacggatactgacacgtcgaca 3319  T

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Target: scaffold0116 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 9846 - 9901
Alignment:
Q  82 gaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgaca 137  Q
    |||||||||||||||| |||||||||||| |||||| |||||| || ||| |||||    
T  9846 gaagcacggatacggacacggacaccggacacgacatggacaccgacacgccgaca 9901  T

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Target: scaffold0450 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Complemental strand, 8670 - 8632
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  8670 tcacataattcggtataattacaaatgtcggtgtcgtgt 8632  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 196
Target Start/End: Original strand, 23444 - 23482
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgt 196  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  23444 tcacataattcagtgtaattataagtgtcggtgtcgtgt 23482  T

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Target: scaffold0103 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 51791 - 51862
Alignment:
Q  114 gacacggacactgatacgtcgacatagccaataatttnnnnnnntcacataattcagtataattacaagtgt 185  Q
    |||||||||||||| ||| ||||| ||| ||||||||       |||||||||||||| |||||||||||||    
T  51791 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaattacaagtgt 51862  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 192
Target Start/End: Original strand, 123652 - 123686
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtc 192  Q
    |||||||||||||| ||||||||||||||||||||    
T  123652 tcacataattcagtgtaattacaagtgtcggtgtc 123686  T

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Target: scaffold0083 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 193
Target Start/End: Complemental strand, 45563 - 45530
Alignment:
Q  160 acataattcagtataattacaagtgtcggtgtcg 193  Q
    |||||||||||| |||||||||||||||||||||    
T  45563 acataattcagtgtaattacaagtgtcggtgtcg 45530  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 9782 - 9726
Alignment:
Q  158 tcacataattcagtataattacaagtgtcggtgtcgtgtagggtgtcagacacgacac 215  Q
    |||| ||||||||| |||||| | |||||||||||||||  |||||||||||||||||    
T  9782 tcacttaattcagtgtaattatatgtgtcggtgtcgtgt-tggtgtcagacacgacac 9726  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 225384 - 225311
Alignment:
Q  77 gctacgaagcacggatacggatacggacaccggatacgacacggacactgatacgtcgacatagccaataattt 150  Q
    |||| ||| |||||| || || |||||||||||| |||||||||||||||| ||| ||||| ||  ||||||||    
T  225384 gctatgaaacacggacacagacacggacaccggacacgacacggacactgacacgccgacacagataataattt 225311  T

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