View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2878_low_3 (Length: 442)
Name: NF2878_low_3
Description: NF2878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2878_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 432
Target Start/End: Original strand, 25066069 - 25066491
Alignment:
| Q |
13 |
ataggctgtttcagattattcaagaaaccaattatgaattaacatgcattgctaaaattgattcttttttcttctgaaaaagacatcactatagtattat |
112 |
Q |
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| T |
25066069 |
atagactgtttcagattattcaagaaaccaattatgaattaacatgcatcgctaaaattgtttcttttttcttctgaaaaagacatcactatagtattat |
25066168 |
T |
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| Q |
113 |
agaatatttgaagcaaacattaagaaattgcgcataactaaacataggttataaaatctaaattataacacaaatttcagaaaaacaaatgataaatcat |
212 |
Q |
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| T |
25066169 |
agaatatttgaagcaaacattaagaaattgcgcataactaaacataggttataaaatctaaattgtaacacaaatttcagaaaaacaaatgataaatcat |
25066268 |
T |
|
| Q |
213 |
gtaaagcaattcataattatgaatgatttaaactattgcatgacaatagaatcaacaaaattaaactaacaattaaaaatattggcaaaatttcaacttt |
312 |
Q |
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| T |
25066269 |
ctaaagcaattcataattatgaatgatttaaactattgcatgacaatagaatcaacaaaattaaactaacaattaaaaatattggcaaaatttcgacttt |
25066368 |
T |
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| Q |
313 |
gaccaaccaattaatcaaccattaattaaagatgatctcac---tcaaaatatacgactttaaccattaatttttcataaattatgtatatgcacataca |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
25066369 |
gaccaaccaattaatcaaccattaattaaagatgatctcacatgtcaaaatatacgactttaaccattaatttttcataaactatgtatatgtacataca |
25066468 |
T |
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| Q |
410 |
tttaattacaactttgacctttg |
432 |
Q |
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||||||||||||||||| ||||| |
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| T |
25066469 |
tttaattacaactttgagctttg |
25066491 |
T |
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