View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2878_low_4 (Length: 267)
Name: NF2878_low_4
Description: NF2878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2878_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 55955237 - 55954992
Alignment:
| Q |
6 |
agagagatgaagaaagcacaatccgaaataagagaagctgttaaagggaaaaagagaatatatgagagtgatctacatgaacttagttacttgaagtcag |
105 |
Q |
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| T |
55955237 |
agagtgatgaagaaagcacaatccgaaataagagaagctgttaaagggaaaaagagaatatatgagagtgatctacatgaacttagttacttgaagtcag |
55955138 |
T |
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| Q |
106 |
tgatcaaagaaaccatgaggttacacccaccttttactttgcttccaagagaatgcagggaagcgtgcaacatagatggatatgaaataccaataaagac |
205 |
Q |
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| T |
55955137 |
tgatcaaagaaaccatgaggttacacccaccttttactttgcttccaagagaatgcagggaagcttgcaacatagatggatatgaaataccaataaagac |
55955038 |
T |
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| Q |
206 |
tagcgtgatagtaaatgcatgggcaattggaagagatcccaaacat |
251 |
Q |
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| T |
55955037 |
tagcgtgatagtaaatgcatgggcaattggaagagatcccaaacat |
55954992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 55958793 - 55958551
Alignment:
| Q |
6 |
agagagatgaagaaagcacaatccgaaataagagaagctgttaaagggaaaaagagaatatatgagagtgatctacatgaacttagttacttgaagtcag |
105 |
Q |
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| T |
55958793 |
agagtgatgaagaaggcacaatctgaaataagagaaacctttaaaggtaaaaagagaacatatgagagtgatctacaagaacttagttacttgaattcag |
55958694 |
T |
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| Q |
106 |
tgatcaaagaaaccatgaggttacacccaccttttactttgcttccaagagaatgcagggaagcgtgcaacatagatggatatgaaataccaataaagac |
205 |
Q |
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| T |
55958693 |
tgatcaaagaaactatgaggttacatccacctgctactttgcttataagagaatgcagggaagcatgcaacataggtggatatgaaataccaataaagac |
55958594 |
T |
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| Q |
206 |
tagcgtgatagtaaatgcatgggcaattggaagagatcccaaa |
248 |
Q |
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| T |
55958593 |
taatgtgttagtaaatgcttgggcaatgtgaagagatcccaaa |
55958551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 9e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 54 - 248
Target Start/End: Complemental strand, 41795957 - 41795761
Alignment:
| Q |
54 |
aaaaagagaatatatgagagtgatctacatgaacttagttacttgaagtcagtgatcaaagaaaccatgag--gttacacccaccttttactttgcttcc |
151 |
Q |
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| T |
41795957 |
aaaaagagaatatatgagagtgatctacatgaacttggttacttaaagtcagtgatcaaagaaacaatgagaggttacatccaccttttactttgcttcc |
41795858 |
T |
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| Q |
152 |
aagagaatgcagggaagcgtgcaacatagatggatatgaaataccaataaagactagcgtgatagtaaatgcatgggcaattggaagagatcccaaa |
248 |
Q |
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| T |
41795857 |
aagagaatgcagggaagcgtgcaacataggtggatatgaaatacctataaagactagtgtgatagtaaatgcatgggcaatcggaagagatcccaaa |
41795761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 6 - 251
Target Start/End: Complemental strand, 12425564 - 12425319
Alignment:
| Q |
6 |
agagagatgaagaaagcacaatccgaaataagagaagctgttaaagggaaaaagagaatatatgagagtgatctacatgaacttagttacttgaagtcag |
105 |
Q |
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|||| ||||||||| |||||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| | |||||||||| || |
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| T |
12425564 |
agagtgatgaagaaggcacaagctgaaataagagaagctgttaaaggtaagaagagaatatatgagagtgatctacataaacttgggtacttgaagttag |
12425465 |
T |
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| Q |
106 |
tgatcaaagaaaccatgaggttacacccaccttttactttgcttccaagagaatgcagggaagcgtgcaacatagatggatatgaaataccaataaagac |
205 |
Q |
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| T |
12425464 |
tgatcaaagaaaccctgaggttacacccacctgctacattgctcatgagagaatgcagggaagcgtgcaacataggtggatatgaaatacctttaaaaac |
12425365 |
T |
|
| Q |
206 |
tagcgtgatagtaaatgcatgggcaattggaagagatcccaaacat |
251 |
Q |
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|| | | ||| ||||||||||||||||||||||||||||| ||||| |
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| T |
12425364 |
taacttaatattaaatgcatgggcaattggaagagatcccgaacat |
12425319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 12268132 - 12268362
Alignment:
| Q |
17 |
gaaagcacaatccgaaataagagaagctgttaaagggaaaaagagaatatatgagagtgatctacatgaacttagttacttgaagtcagtgatcaaagaa |
116 |
Q |
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| T |
12268132 |
gaaagcacaagctgaaataagagaagtttgtaaaggtaagaagagaatttatgaaagtgatttgcatgaacttagttacttgaagtcagtgatcaaagaa |
12268231 |
T |
|
| Q |
117 |
accatgaggttacacccaccttttactttgcttccaagagaatgcagggaagcgtgcaacatagatggatatgaaataccaataaagactagcgtgatag |
216 |
Q |
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||| ||||||||||||||||| | | | ||| ||||||||||||||||||| |||||||||| |||||||||||||| |||||||||| | ||| |
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| T |
12268232 |
accctgaggttacacccacctggtgcaatacttacaagagaatgcagggaagcatgcaacataggaggatatgaaatacctataaagactaatttaatat |
12268331 |
T |
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| Q |
217 |
taaatgcatgggcaattggaagagatcccaa |
247 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
12268332 |
taaatgcatgggcaattggaagagatcccaa |
12268362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 244
Target Start/End: Original strand, 7154255 - 7154428
Alignment:
| Q |
74 |
tgatctacatgaacttagttacttgaagtcagtgatcaaagaaaccatgaggttacacccaccttttact---ttgcttccaagagaatgcagggaagcg |
170 |
Q |
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||||||| ||||||| | |||||| |||| ||||||||||||||| ||||||||||||||||||| || ||| | || |||||||||| ||| | |
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| T |
7154255 |
tgatctaaatgaactaacttactttaagttagtgatcaaagaaacaatgaggttacacccaccttcacctttattggtccctagagaatgcactgaattg |
7154354 |
T |
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| Q |
171 |
tgcaacatagatggatatgaaataccaataaagactagcgtgatagtaaatgcatgggcaattggaagagatcc |
244 |
Q |
| |
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|| ||||||||| ||||||||||||| ||| |||| ||||| |||||||||||||| | | ||||||||| |
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| T |
7154355 |
accatcatagatggttatgaaataccaaaaaatactaaagtgatgataaatgcatgggcagtggcaagagatcc |
7154428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 7141496 - 7141549
Alignment:
| Q |
85 |
aacttagttacttgaagtcagtgatcaaagaaaccatgaggttacacccacctt |
138 |
Q |
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| T |
7141496 |
aactaagttacttaaagttagtgatcaaagaaacattgaggttacacccacctt |
7141549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 41465802 - 41465836
Alignment:
| Q |
210 |
gtgatagtaaatgcatgggcaattggaagagatcc |
244 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |
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| T |
41465802 |
gtgatagtaaatgcatgggcgattggaagagatcc |
41465836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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