View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2878_low_5 (Length: 250)
Name: NF2878_low_5
Description: NF2878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2878_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 112 - 246
Target Start/End: Original strand, 23045831 - 23045965
Alignment:
| Q |
112 |
tgattattctaatttaagaatttttgaatatcctgcatatgtacatgtcaatgatggcaaattagctccaagagccgttaagtgcatatttcttggttat |
211 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
23045831 |
tgattattctaatttaagaatttttggatgtcctgcatatgcacatgtcaatgatggcaaattagctccaagagctgttgagtgcatatttcttggttat |
23045930 |
T |
|
| Q |
212 |
gcatctgagtctaaggggtatcgtctgtgctgctc |
246 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| |
|
|
| T |
23045931 |
gcatctgagtctaaggggtatcgtttgtggtgctc |
23045965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 9e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 114 - 246
Target Start/End: Original strand, 29473133 - 29473265
Alignment:
| Q |
114 |
attattctaatttaagaatttttgaatatcctgcatatgtacatgtcaatgatggcaaattagctccaagagccgttaagtgcatatttcttggttatgc |
213 |
Q |
| |
|
|||||||||||||||||||||||| || || | |||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
29473133 |
attattctaatttaagaatttttggatgtcttacatatgcacatgtcaatgatggcaaattagctccaagagctgttgagtgcatatttcttggttatgc |
29473232 |
T |
|
| Q |
214 |
atctgagtctaaggggtatcgtctgtgctgctc |
246 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| |
|
|
| T |
29473233 |
atctgagtctaaggggtatcgtttgtggtgctc |
29473265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 3075368 - 3075276
Alignment:
| Q |
154 |
acatgtcaatgatggcaaattagctccaagagccgttaagtgcatatttcttggttatgcatctgagtctaaggggtatcgtctgtgctgctc |
246 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
3075368 |
acatgtcaatgatggaaaattagctccacgagccgttgagtgcatatttcttgattatgcatctgagtctaaggggtatcgtttgtggtgctc |
3075276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 112 - 246
Target Start/End: Complemental strand, 15239588 - 15239454
Alignment:
| Q |
112 |
tgattattctaatttaagaatttttgaatatcctgcatatgtacatgtcaatgatggcaaattagctccaagagccgttaagtgcatatttcttggttat |
211 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| ||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
15239588 |
tgattattctaatttaagaatttttggatgtccagcatatgcacttgtcaatgatggcaaattagctccaagagccgttgagtgcatatttctttcttat |
15239489 |
T |
|
| Q |
212 |
gcatctgagtctaaggggtatcgtctgtgctgctc |
246 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| |
|
|
| T |
15239488 |
gcatctgagtctaaggggtatcgtttgtggtgctc |
15239454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University