View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2878_low_6 (Length: 246)
Name: NF2878_low_6
Description: NF2878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2878_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 5 - 165
Target Start/End: Original strand, 43733206 - 43733366
Alignment:
| Q |
5 |
aatcgattgcttgcttttcttccttcaattgatcttcagcctttcttcttcaagctaatctcaaatctacacagcaaggctaactagcacaacaaaagca |
104 |
Q |
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| T |
43733206 |
aatcgattgcttacttttcttccttcaattgatcttcagcctttcttcttcaagctaatctgaaatctacacagcaaggctaactagcacaacaaaagca |
43733305 |
T |
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| Q |
105 |
aagctactatcccaaaccaacattctgttattgcaacacaaaggtagaacagttattatcc |
165 |
Q |
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| T |
43733306 |
aagctactatcccaaaccaacattctgttattgtaacacaaaggtagaacagttattatcc |
43733366 |
T |
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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 36588916 - 36588813
Alignment:
| Q |
42 |
agcctttcttcttcaagctaatctcaaatctacacagcaaggctaactagcacaacaaaagcaaagctactatcccaaaccaacattctgttattgcaac |
141 |
Q |
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| T |
36588916 |
agcctttcttcttcatgctaaactcaaatccaca-agcaaagttaacaagcacatgaaa-gcaaagttaaaatcccaaaccaacattctgttattgcaac |
36588819 |
T |
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| Q |
142 |
acaaag |
147 |
Q |
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| T |
36588818 |
acaaag |
36588813 |
T |
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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 45619273 - 45619170
Alignment:
| Q |
42 |
agcctttcttcttcaagctaatctcaaatctacacagcaaggctaactagcacaacaaaagcaaagctactatcccaaaccaacattctgttattgcaac |
141 |
Q |
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| T |
45619273 |
agcctttcttcttcatgctaaactcaaatccaca-agcaaagttaacaagcacatgaaa-gcaaagttaaaatcccaaaccaacattttgttattgcaac |
45619176 |
T |
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| Q |
142 |
acaaag |
147 |
Q |
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|||||| |
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| T |
45619175 |
acaaag |
45619170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 3937529 - 3937481
Alignment:
| Q |
99 |
aaagcaaagctactatcccaaaccaacattctgttattgcaacacaaag |
147 |
Q |
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| T |
3937529 |
aaagcaaagttaaaattccaaaccaacattctgttattgcaacacaaag |
3937481 |
T |
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