View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2878_low_9 (Length: 239)
Name: NF2878_low_9
Description: NF2878
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2878_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 23 - 239
Target Start/End: Complemental strand, 40006687 - 40006471
Alignment:
| Q |
23 |
tttgatttgatggtcatcaatgtatgttttcatgaagtaggtaaacttatttaggtataactttttatgttagcataaaagaagccgtaattctggaaga |
122 |
Q |
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| T |
40006687 |
tttgatttgatggtcatcaatgtatgttttcatgaagtaggtaaacttatttaggtataactttttatgttagcataaaagaagccgtaattctggaaga |
40006588 |
T |
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| Q |
123 |
aataataattgtactttaaacttcaaagaatgtaatagataaagatgaggcgtacaaatgccgattgaaaaacaattatggtcatcatttttcaagcagt |
222 |
Q |
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| T |
40006587 |
aataataattgtactttaaacttcaaagaatgtaatagataaagatgaggggtacaaatgccgattgaaaaacaattatggtcatcatttttcaagcagt |
40006488 |
T |
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| Q |
223 |
taagtcctttgaaattt |
239 |
Q |
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| T |
40006487 |
taagtcctttgaaattt |
40006471 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 50241250 - 50241295
Alignment:
| Q |
186 |
attgaaaaacaattatggtcatcatttttcaagcagttaagtcctt |
231 |
Q |
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| T |
50241250 |
attgtaaaacaattatggtcatcacttatcaagcagttaagtcctt |
50241295 |
T |
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