View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2879_high_3 (Length: 251)

Name: NF2879_high_3
Description: NF2879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2879_high_3
NF2879_high_3
[»] chr4 (2 HSPs)
chr4 (19-232)||(10708426-10708639)
chr4 (19-232)||(10922196-10922409)
[»] chr2 (5 HSPs)
chr2 (19-232)||(41247877-41248079)
chr2 (140-232)||(44377826-44377918)
chr2 (140-232)||(44393406-44393498)
chr2 (161-216)||(32299716-32299771)
chr2 (161-210)||(33236443-33236492)
[»] scaffold0032 (1 HSPs)
scaffold0032 (19-210)||(125585-125776)
[»] scaffold0416 (1 HSPs)
scaffold0416 (99-232)||(12392-12525)
[»] chr7 (1 HSPs)
chr7 (161-228)||(12161157-12161224)
[»] chr6 (2 HSPs)
chr6 (161-228)||(15157168-15157235)
chr6 (185-228)||(15144242-15144285)
[»] scaffold0093 (1 HSPs)
scaffold0093 (161-213)||(13658-13710)
[»] scaffold0111 (1 HSPs)
scaffold0111 (20-229)||(43649-43858)
[»] chr3 (1 HSPs)
chr3 (140-228)||(19178093-19178181)
[»] chr1 (2 HSPs)
chr1 (20-232)||(21490212-21490424)
chr1 (161-210)||(21810796-21810845)
[»] scaffold0265 (1 HSPs)
scaffold0265 (161-201)||(21973-22013)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 10708639 - 10708426
Alignment:
Q  19 tggcaatgtggctttgaaagttgatattaaaaaagcattcaacacgttggattggaactttttggccgcggtgcttcggaagtttggtttttcttctatg 118  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||  | |||||| || |||||||||||||||||| ||    
T  10708639 tggcaatgtggctttgaaagttgatattaaaaaagccttcaatacgttggattggaactttctggttgtggtgctccgaaagtttggtttttcttctctg 10708540  T
Q  119 tttaccgactgaattcttgctattttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgac 218  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  10708539 tttaccgactggattcttgctattttgcactcagctagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtagtgtccgac 10708440  T
Q  219 aaggtgacccttta 232  Q
    ||||||||||||||    
T  10708439 aaggtgacccttta 10708426  T

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Target: chr4; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 10922409 - 10922196
Alignment:
Q  19 tggcaatgtggctttgaaagttgatattaaaaaagcattcaacacgttggattggaactttttggccgcggtgcttcggaagtttggtttttcttctatg 118  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||  | |||||| || |||||||||||||||||| ||    
T  10922409 tggcaatgtggctttgaaagttgatattaaaaaagccttcaatacgttggattggaactttctggttgtggtgctccgaaagtttggtttttcttctctg 10922310  T
Q  119 tttaccgactgaattcttgctattttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgac 218  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  10922309 tttaccgactggattcttgctattttgcactcagctagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtagtgtccgac 10922210  T
Q  219 aaggtgacccttta 232  Q
    ||||||||||||||    
T  10922209 aaggtgacccttta 10922196  T

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Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 41248079 - 41247877
Alignment:
Q  19 tggcaatgtggctttgaaagttgatattaaaaaagcattcaacacgttggattggaactttttggccgcggtgcttcggaagtttggtttttcttctatg 118  Q
    ||||||| ||||||||||||||||||||||||          |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41248079 tggcaatttggctttgaaagttgatattaaaa----------cacgttggattggaactttt-ggccgcggtgcttcggaagtttggtttttcttctatg 41247991  T
Q  119 tttaccgactgaattcttgctattttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgac 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||    
T  41247990 tttaccgactgaattcttgctattttgcactcagccaggctttctattttggtgaatggtaagacagtgggttttttctcttgttctcgtggtgtctgac 41247891  T
Q  219 aaggtgacccttta 232  Q
    ||||||||||||||    
T  41247890 aaggtgacccttta 41247877  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 44377826 - 44377918
Alignment:
Q  140 attttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgacccttta 232  Q
    ||||| ||||| || ||||| ||||||||||||||||| || || |||||||| |||||||||   ||||||||||| ||||| |||||||||    
T  44377826 attttacactcggcaagactctctattttggtgaatggcaaagcggtgggtttcttctcttgtgtccgtggtgttcgtcaaggagacccttta 44377918  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 232
Target Start/End: Original strand, 44393406 - 44393498
Alignment:
Q  140 attttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgacccttta 232  Q
    ||||| ||||| || ||||| ||||||||||||||||| || || |||||||| |||||||||   ||||||||||| ||||| |||||||||    
T  44393406 attttacactcggcaagactctctattttggtgaatggcaaagcggtgggtttcttctcttgtgtccgtggtgttcgtcaaggagacccttta 44393498  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 216
Target Start/End: Original strand, 32299716 - 32299771
Alignment:
Q  161 tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcg 216  Q
    ||||||||||| ||||||||||| || ||||||||| |||| |||||||| |||||    
T  32299716 tctattttggttaatggtaaggcggttggttttttcgcttgctctcgtggggttcg 32299771  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 33236492 - 33236443
Alignment:
Q  161 tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtgg 210  Q
    ||||||||||| ||||| |||||||| || |||||||||||||| |||||    
T  33236492 tctattttggttaatggcaaggcagttggctttttctcttgttcccgtgg 33236443  T

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Target: scaffold0032 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 125585 - 125776
Alignment:
Q  19 tggcaatgtggctttgaaagttgatattaaaaaagcattcaacacgttggattggaactttttggccgcggtgcttcggaagtttggtttttcttctatg 118  Q
    |||||||||||||||||| |||||||||||||| | |||  ||||||| |||||||| |||||||  ||| ||||    || || ||||||||||   ||    
T  125585 tggcaatgtggctttgaaggttgatattaaaaaggtatttgacacgttagattggaattttttggttgcgatgctaaaaaaattcggtttttctttggtg 125684  T
Q  119 tttaccgactgaattcttgctattttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtgg 210  Q
    |||||  |||| || |||||||||||||||||||| || |||||||||||||||||| ||||||| ||||| |||||  |||||||| ||||    
T  125685 tttacgaactggatccttgctattttgcactcagctaggctttctattttggtgaatcgtaaggcggtgggattttttacttgttcttgtgg 125776  T

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Target: scaffold0416 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 232
Target Start/End: Original strand, 12392 - 12525
Alignment:
Q  99 agtttggtttttcttctatgtttaccgactgaattcttgctattttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctc 198  Q
    ||||||||||||||||| | ||  || | || ||| | || ||||| ||||| |||||||||||||||||||||||||| |||||  |||| || |||||    
T  12392 agtttggtttttcttctgttttctccaattggattttggcaattttacactcggccagactttctattttggtgaatggcaaggcgctggggttcttctc 12491  T
Q  199 ttgttctcgtggtgttcgacaaggtgacccttta 232  Q
    ||||   ||||||||||| ||||| |||||||||    
T  12492 ttgtgtccgtggtgttcgtcaaggggacccttta 12525  T

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Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 12161157 - 12161224
Alignment:
Q  161 tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgaccc 228  Q
    ||||||||||||||||  || || ||||||||||||||||||||| |||||||||||||||| |||||    
T  12161157 tctattttggtgaatgcaaaagcggtgggttttttctcttgttcttgtggtgttcgacaaggagaccc 12161224  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 228
Target Start/End: Original strand, 15157168 - 15157235
Alignment:
Q  161 tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgaccc 228  Q
    ||||||||||||||||  || || ||||||||||||||||||||| |||||||||||||||| |||||    
T  15157168 tctattttggtgaatgcaaaagcggtgggttttttctcttgttcttgtggtgttcgacaaggagaccc 15157235  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 228
Target Start/End: Complemental strand, 15144285 - 15144242
Alignment:
Q  185 gtgggttttttctcttgttctcgtggtgttcgacaaggtgaccc 228  Q
    ||||| ||||||||||| |||||||||||||||||||| |||||    
T  15144285 gtgggatttttctcttgctctcgtggtgttcgacaaggggaccc 15144242  T

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Target: scaffold0093 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 13658 - 13710
Alignment:
Q  161 tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgt 213  Q
    |||||||| |||||||| ||||||||||||||||||||||| |||||||||||    
T  13658 tctattttagtgaatggaaaggcagtgggttttttctcttgctctcgtggtgt 13710  T

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Target: scaffold0111 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 43858 - 43649
Alignment:
Q  20 ggcaatgtggctttgaaagttgatattaaaaaagcattcaacacgttggattggaactttttggccgcggtgcttcggaagtttggtttttcttctatgt 119  Q
    ||||||||||| ||| |||| ||||||||||| || ||    ||||||||||| || || |||   ||||||||  | || |||||||| ||   | |||    
T  43858 ggcaatgtggcattgtaagtcgatattaaaaaggcctttgttacgttggattgaaatttcttgatagcggtgctcagaaaatttggtttctcacatttgt 43759  T
Q  120 ttaccgactgaattcttgctattttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgaca 219  Q
    |||| ||||| ||||||||||| ||  | |||||  | || ||||| ||||||||||||||||||||||| || |||  |||||||||||| || |||||    
T  43758 ttactgactggattcttgctatcttatattcagctcggctctctatcttggtgaatggtaaggcagtgggattcttcaattgttctcgtggagtccgaca 43659  T
Q  220 aggtgaccct 229  Q
     || ||||||    
T  43658 gggggaccct 43649  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 19178093 - 19178181
Alignment:
Q  140 attttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgacaaggtgaccc 228  Q
    |||||||  |||||| | |||||||||||||||||||||||||| |||||||| || ||||| || || ||||| || ||||| |||||    
T  19178093 attttgctttcagcccgtctttctattttggtgaatggtaaggcggtgggtttcttttcttgctcccgcggtgtccgtcaaggagaccc 19178181  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 21490424 - 21490212
Alignment:
Q  20 ggcaatgtggctttgaaagttgatattaaaaaagcattcaacacgttggattggaactttttggccgcggtgcttcggaagtttggtttttcttctatgt 119  Q
    ||||||||||| || ||||| ||||||||||| || ||  | || ||||||||||| || |||   ||||||||  | || |||||||| ||   | |||    
T  21490424 ggcaatgtggcattaaaagtcgatattaaaaaggcctttgatacattggattggaatttcttgatagcggtgctcagaaaatttggtttctcacatttgt 21490325  T
Q  120 ttaccgactgaattcttgctattttgcactcagccagactttctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtggtgttcgaca 219  Q
    |||| ||||| || |||||||| || || |||||  | || || || ||||||||||||||||||||||| || |||  ||||||||| || || ||| |    
T  21490324 ttactgactggatacttgctatcttacattcagctcggctctccatcttggtgaatggtaaggcagtgggattcttcaattgttctcggggagtccgata 21490225  T
Q  220 aggtgacccttta 232  Q
     || |||||||||    
T  21490224 gggggacccttta 21490212  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 21810796 - 21810845
Alignment:
Q  161 tctattttggtgaatggtaaggcagtgggttttttctcttgttctcgtgg 210  Q
    ||||||||||||||||| |||||||| |||||||| ||||| || |||||    
T  21810796 tctattttggtgaatggaaaggcagttggttttttttcttgctcccgtgg 21810845  T

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Target: scaffold0265 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 22013 - 21973
Alignment:
Q  161 tctattttggtgaatggtaaggcagtgggttttttctcttg 201  Q
    ||||||||||||||||| |||||||| |||||||| |||||    
T  22013 tctattttggtgaatggaaaggcagttggttttttttcttg 21973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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