View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2879_low_2 (Length: 455)
Name: NF2879_low_2
Description: NF2879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2879_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 432
Target Start/End: Original strand, 38709785 - 38710197
Alignment:
| Q |
20 |
tatggtggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38709785 |
tatggtggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggt |
38709884 |
T |
|
| Q |
120 |
gggtcgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtctttgggatgatcgcttt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
38709885 |
gggtcgagtttttggacaggttaaggtgtttgttctggtggttcgtgagttgaggggtgcctttttgccttgtttcgggagtctttgggctgatcgcttt |
38709984 |
T |
|
| Q |
220 |
tgattcgaggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacg |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38709985 |
tgattcgaggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccggaacttgagtggtggtcgaagctgaacg |
38710084 |
T |
|
| Q |
320 |
cttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgctg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
38710085 |
cttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttattaggggatttggcattttgagggtgctg |
38710184 |
T |
|
| Q |
420 |
gtggtttttggtg |
432 |
Q |
| |
|
||||||||||||| |
|
|
| T |
38710185 |
gtggtttttggtg |
38710197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 41 - 428
Target Start/End: Original strand, 4391460 - 4391849
Alignment:
| Q |
41 |
gtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggtcgagtttttggacaggt |
140 |
Q |
| |
|
|||| |||| ||| |||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||| ||||| |
|
|
| T |
4391460 |
gtttatgttcgagatggtttgctttgtgctactattccgccttttctctgtctttggattttggcatcgggttcttggtgggtcgaggttttggtcaggt |
4391559 |
T |
|
| Q |
141 |
taaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtctt-tgggatgatcgcttttgattcgaggtcgggagcaa |
239 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| ||||| |||||||||||| ||||||||||| |||| ||||||||||||||| |||||||||||| |
|
|
| T |
4391560 |
taaggtgtctgttctggtggttcgtgagttgaggggtgcatttttgccttgtgtcgggagtcttgtgggccaatcgcttttgattcggggtcgggagcaa |
4391659 |
T |
|
| Q |
240 |
g-tttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaac-gcttgaagcaaaatcacca |
337 |
Q |
| |
|
| |||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||| | |||||||||||||| | |
|
|
| T |
4391660 |
gttttgtgactcaggt-cttttaggctgttgtgatgtctcctccgatagacaggaacttgagtggtggtcgaagttgagcatcttgaagcaaaatcttta |
4391758 |
T |
|
| Q |
338 |
ttgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgctggtggttttt |
428 |
Q |
| |
|
| |||| ||| ||||||||| ||||||||||||||||||| || ||||||||||||| ||||||||||||| |||||| |||||| |
|
|
| T |
4391759 |
tcatgtgcttgattttccactgttggtggtgttggttctttgaggagcttttgttaggggattcgacattttgagggggctggttgttttt |
4391849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 211 - 428
Target Start/End: Complemental strand, 4397527 - 4397313
Alignment:
| Q |
211 |
gatcgcttttgattcgaggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcga |
310 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
4397527 |
gatcgcttttgattcgagttcgggagtaagtttgtgactcaggtccttttaggctgttgtgatgtctcctccgatagaccggatcttgagtggtggtcga |
4397428 |
T |
|
| Q |
311 |
agctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttg |
410 |
Q |
| |
|
||||||||| ||||||||||||||| || ||||||| ||||||||| |||||||||||||||||||||||||| ||||||| |||||| | ||||||| |
|
|
| T |
4397427 |
agctgaacgtttgaagcaaaatcactatcgggtgcctaattgatcattgttggcggtgttggttctttgagga---gttgttatgggattcggcattttg |
4397331 |
T |
|
| Q |
411 |
agggtgctggtggttttt |
428 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4397330 |
agggtgctggtggttttt |
4397313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 74 - 204
Target Start/End: Complemental strand, 39909016 - 39908886
Alignment:
| Q |
74 |
gttccgccttttctctgtctttgaattttggcatcgggttattggtgggtcgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgat |
173 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| || |||| ||||||||||||||| |
|
|
| T |
39909016 |
gttccaccttttctctgtctttggattttggcatcgggttattggtggatcgagtttttggacaggtttaggtgtatgctctggtggttcgtgagttgag |
39908917 |
T |
|
| Q |
174 |
aggtgcctttttgccttgtttcgggagtctt |
204 |
Q |
| |
|
||||| |||||| ||||| ||| ||||||| |
|
|
| T |
39908916 |
gggtgcttttttgacttgtgtcgtgagtctt |
39908886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 24 - 237
Target Start/End: Original strand, 38564742 - 38564951
Alignment:
| Q |
24 |
gtggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggt |
123 |
Q |
| |
|
|||||||||||| || ||||| ||| ||||||||| | |||| ||| || |||| ||| ||||| ||||| |||||| |||||| || | |||||||| |
|
|
| T |
38564742 |
gtggcttgttttcatatgtttaggttcgagctggttcgttttgtgctgctattccacctgttctccgtcttcgaattt-ggcatcaggattttggtggg- |
38564839 |
T |
|
| Q |
124 |
cgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtct-ttgggatgatcgcttttga |
222 |
Q |
| |
|
||||||| ||||||||| ||||||||| || ||||| ||||||||||| |||||| ||||| |||| | ||||||| |||| |||||||||||| |
|
|
| T |
38564840 |
cgagttt--ggacaggtttaggtgtttgctcagatgggtcgtgagttgaggggtgcc-ttttgatttgtgttaggagtctcgtgggccgatcgcttttga |
38564936 |
T |
|
| Q |
223 |
ttcgaggtcgggagc |
237 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
38564937 |
ttcgagatcgggagc |
38564951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 243
Target Start/End: Original strand, 13987533 - 13987677
Alignment:
| Q |
100 |
tttggcatcgggttattggtgggtcgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcggga |
199 |
Q |
| |
|
||||||||| |||| |||||| | ||||||||| || ||||| ||||| || |||| ||||||||||||||| |||||||| || |||| |||||| |
|
|
| T |
13987533 |
tttggcatcaggtttttggtgagccgagtttttagataggttttggtgtctgctctggtggttcgtgagttgaggggtgccttgatgatttgtgtcggga |
13987632 |
T |
|
| Q |
200 |
gtct-ttgggatgatcgcttttgattcgaggtcgggagcaagttt |
243 |
Q |
| |
|
||| |||| |||||||||| |||||| |||||||| ||||| |
|
|
| T |
13987633 |
atctggtgggccaatcgcttttgcttcgagatcgggagctagttt |
13987677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 238; Significance: 1e-131; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 29 - 424
Target Start/End: Original strand, 35846938 - 35847335
Alignment:
| Q |
29 |
ttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggtcgagt |
128 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||| |||| |||||| |||||||| |||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
35846938 |
ttgttttgatttgtttgtgttcgagctggttcgctttatgctattgttccaccttttctttgtctttggattttggcatcgggttattggtgggtcaagt |
35847037 |
T |
|
| Q |
129 |
ttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgccttttt-gccttgtttcgggagtctt-tgggatgatcgcttttgattcg |
226 |
Q |
| |
|
||||||||| |||||||||| || |||| ||||| |||||||||| ||||||||||| | ||||| |||||||| || |||| ||||| |||||||||| |
|
|
| T |
35847038 |
ttttggacatgttaaggtgtctgctctggtggtttgtgagttgatgggtgccttttttgacttgtgtcgggagttttgtgggccgatcgattttgattcg |
35847137 |
T |
|
| Q |
227 |
aggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgcttgaag |
326 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||| || ||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
35847138 |
aggtcgggagcacgtttgtgactcgggtccttttaggctgctgtgatgtctcctccgatagaccgggacttgagtggtggtcgaagctgaacgtttgaag |
35847237 |
T |
|
| Q |
327 |
caaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgctggtggt |
424 |
Q |
| |
|
||||||||| || ||||||| ||||||| | |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35847238 |
caaaatcactatcgggtgcctaattgataaatgttggcggtgttggttctttgaggagttgttgttaggggattcgacattttgagggtgctggtggt |
35847335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 43 - 428
Target Start/End: Complemental strand, 42742561 - 42742178
Alignment:
| Q |
43 |
ttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggtcgagtttttggacaggtta |
142 |
Q |
| |
|
||||||||||| | ||| |||||||||||||||| | ||||||||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
42742561 |
ttgtgtttgagttagttggctttgcgctactgtttcaacttttctctgtttttggattttggcatcgggttattggtgggtcaagtttttgaacaggttt |
42742462 |
T |
|
| Q |
143 |
aggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtctttgggatgatcgcttttgattcgaggtcgggagcaagtt |
242 |
Q |
| |
|
|||||| || |||| ||||||||| |||| |||||||||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
42742461 |
aggtgtctgctctggtggttcgtgggttgtggggtgcctttttgacttgtgtcgggagtcttgtgggcgatcgcttttgattcgaggtcgggagcaagtt |
42742362 |
T |
|
| Q |
243 |
tgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattggg |
342 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| || ||| |||||| ||||||| | | || |
|
|
| T |
42742361 |
tgtgactcatgtccttttaggctgttgtgatgtctcctccgatagactggaacttgagtggtggtcaaagttgtacgtttgaaggaaaatca-cttcagg |
42742263 |
T |
|
| Q |
343 |
tgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgctggtggttttt |
428 |
Q |
| |
|
|||| ||||| |||||||| |||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
42742262 |
tgcctaattg-tcactgttcacggtgttggttctttgaggagctgttgttaggggtttcagcattttgagggtgctggtggttttt |
42742178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 24 - 428
Target Start/End: Original strand, 29685663 - 29686068
Alignment:
| Q |
24 |
gtggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggt |
123 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| ||||||| ||||||||| ||||||||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
29685663 |
gtggcttgttttgatt-gtttgtgttcgagctggttcactttgcgttactgttccaccttttctctgtctttggaatttggcatatggttattggtgggt |
29685761 |
T |
|
| Q |
124 |
cgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtctt-tgggatgatcgcttttga |
222 |
Q |
| |
|
||||||||| ||||||||||| || || |||| ||||||||||||||| || |||| || | ||| |||||||||| |||| |||| ||||||| |
|
|
| T |
29685762 |
tgagtttttgaacaggttaaggggtctgctctggtggttcgtgagttgaggagtaccttaatgacctgtgtcgggagtctaatgggtcgatcacttttga |
29685861 |
T |
|
| Q |
223 |
ttcgaggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgctt |
322 |
Q |
| |
|
||||| ||||||||| |||||||||||||| |||||||||| | |||||| ||||||||||||||||| ||| ||| |||||||| ||||||||||| || |
|
|
| T |
29685862 |
ttcgaagtcgggagctagtttgtgactcagatccttttaggcttttgtgaagtctcctccgatagaccggaatttgtgtggtggtggaagctgaacgttt |
29685961 |
T |
|
| Q |
323 |
gaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacat-tttgagggtgctggt |
421 |
Q |
| |
|
|||||||| ||| || ||||| |||||| |||||||| ||||||||||||||||||| |||||||||||| || ||||| ||||||| ||||||| |
|
|
| T |
29685962 |
gaagcaaagtcattatcaggtgcttaattgaccactgttgatggtgttggttctttgaggagttgttgttaggggtttcgacatgtttgaggatgctggt |
29686061 |
T |
|
| Q |
422 |
ggttttt |
428 |
Q |
| |
|
||||||| |
|
|
| T |
29686062 |
ggttttt |
29686068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 81 - 400
Target Start/End: Original strand, 3204173 - 3204495
Alignment:
| Q |
81 |
cttttctctgtctttgaattttggcatcgggttattggtgggtcgagtttttggacaggttaa----ggtgtttgttctgatggttcgtgagttgatagg |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| || |||| ||| ||||||||||| || |
|
|
| T |
3204173 |
cttttctctgtctttgaattttggcatcgggttattggtgggtcgaggttttggtcaggttaattaaggtgtatgctctggtggctcgtgagttgagggg |
3204272 |
T |
|
| Q |
177 |
tgcctttttgccttgtttcgggagtctttgggatga-tcgcttttgattcgaggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgt |
275 |
Q |
| |
|
||||||||| ||||| || | |||||| ||| | ||| ||||||||||||||||||||||||||||||||| || | |||||||| ||||||||||| |
|
|
| T |
3204273 |
tgcctttttaacttgtgtcag-agtcttgtggaccaatcgtttttgattcgaggtcgggagcaagtttgtgacttagattcttttaggctgttgtgatgt |
3204371 |
T |
|
| Q |
276 |
ctcctccgatagaccagaacttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttc |
375 |
Q |
| |
|
||||||||||| || |||||||||||||||||| |||||||||| ||| ||||||||| | ||||| ||||||||| ||| |||||||||||| |
|
|
| T |
3204372 |
ctcctccgatatactagaacttgagtggtggtcaaagctgaacg-ttggagcaaaatcttttccgagtgcctttttgatcactattgacggtgttggttc |
3204470 |
T |
|
| Q |
376 |
tttgaggaactgttgttaggggatt |
400 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
3204471 |
tttgaggagttgttgttaggggatt |
3204495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 90 - 428
Target Start/End: Original strand, 2706963 - 2707303
Alignment:
| Q |
90 |
gtctttgaattttggcatcgggttattggtgggtcgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgcct |
189 |
Q |
| |
|
||||||| | ||||||||| ||||||||||| | |||||| ||||||||||||||||| || || | ||||||||||||||| ||||| || || || |
|
|
| T |
2706963 |
gtctttggaatttggcatctggttattggtgtgccgagttcttggacaggttaaggtgcctgctccggtggttcgtgagttgaggggtgctttaatgact |
2707062 |
T |
|
| Q |
190 |
tgtttcgggagtctttgggat-gatcgcttttgattcgaggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgataga |
288 |
Q |
| |
|
||| |||||||||| | | |||| |||||||||||||||||||||| ||||||||||||| ||||||||||| | ||| |||||||||||| ||| |
|
|
| T |
2707063 |
tgtgtcgggagtctagtgaaccgatcacttttgattcgaggtcgggagctagtttgtgactcatgtccttttaggcttttgcattgtctcctccgaaaga |
2707162 |
T |
|
| Q |
289 |
ccagaacttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgt |
388 |
Q |
| |
|
| |||||||||||||||| |||||||||| |||||||||||||| | ||||||| ||||||| |||||||| |||||||||| | |||||| || | |
|
|
| T |
2707163 |
tcgtaacttgagtggtggtcaaagctgaacgtttgaagcaaaatcattactgggtgcttaattgattactgttggtggtgttggttatctgaggagctat |
2707262 |
T |
|
| Q |
389 |
tgttaggggatttgacat-tttgagggtgctggtggttttt |
428 |
Q |
| |
|
||||||||| || ||||| |||||||||||||||||||||| |
|
|
| T |
2707263 |
tgttaggggtttcgacatgtttgagggtgctggtggttttt |
2707303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 232 - 428
Target Start/End: Original strand, 25362318 - 25362514
Alignment:
| Q |
232 |
gggagcaagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgcttgaagcaaaa |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||| | ||||||||||| ||||||||||| |
|
|
| T |
25362318 |
gggagcaagtttgtgactcaggtccttttaggctgttgtgatgtctccattgatagaccggaacttgagtggtgattgaagctgaacgtttgaagcaaaa |
25362417 |
T |
|
| Q |
332 |
tcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgctggtggttttt |
428 |
Q |
| |
|
|| | || ||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
25362418 |
tctctatcgggtgcctaattgatcactgttggcggtgttagttctttgaggagttgttgttaggggattcaacattttgagggtgatggtggttttt |
25362514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 158 - 428
Target Start/End: Original strand, 39368832 - 39369102
Alignment:
| Q |
158 |
tggttcgtgagttgataggtgcctttttgccttgtttcgggagtctt-tgggatgatcgcttttgattcgaggtcgggagcaagtttgtgactcaggtcc |
256 |
Q |
| |
|
||||||||||||||| ||||| ||||||| ||||| ||||||||||| |||| || |||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
39368832 |
tggttcgtgagttgagaggtgtctttttgacttgtgtcgggagtcttgtgggccgaccgcttttgattcgaggtcgggagcaagtttttgactcaggttc |
39368931 |
T |
|
| Q |
257 |
ttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatca |
356 |
Q |
| |
|
||||||| ||||||| ||||||||| | |||| | || ||||||||||||||||||||||| ||||||||| ||| | | ||||||| ||| |||| |
|
|
| T |
39368932 |
ttttaggttgttgtgttgtctcctcagtgcgaccgggacgtgagtggtggtcgaagctgaacgtttgaagcaatgtca-cttcgggtgccttatttatca |
39369030 |
T |
|
| Q |
357 |
ctgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgctggtggttttt |
428 |
Q |
| |
|
||||||||| ||||||||||| ||||| ||||||||||||| |||| ||||||||| ||||| |||||||| |
|
|
| T |
39369031 |
ctgttggcgatgttggttcttggaggagctgttgttaggggttttggcattttgagagtgctaatggttttt |
39369102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 294 - 428
Target Start/End: Original strand, 17218822 - 17218956
Alignment:
| Q |
294 |
acttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgtta |
393 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
17218822 |
acttgagtggtggtcgaagctgaacttttgaagcaaaatcactattgggtgcctaattgttcactgttggcggtgttggttctttgatgagttgttgtta |
17218921 |
T |
|
| Q |
394 |
ggggatttgacattttgagggtgctggtggttttt |
428 |
Q |
| |
|
||| ||| | ||||||||||||||||||||||||| |
|
|
| T |
17218922 |
gggtattcggcattttgagggtgctggtggttttt |
17218956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 241 - 373
Target Start/End: Original strand, 40377649 - 40377781
Alignment:
| Q |
241 |
tttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattg |
340 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||| ||| ||||||| |||||| |||||||| |||| |
|
|
| T |
40377649 |
tttgtgactcaggtccttttaggctgttgtgatgtctcctccgatagaccggatcttgagtggtggtggaacctgaacgtttgaagtaaaatcactattg |
40377748 |
T |
|
| Q |
341 |
ggtgccaaattgatcactgttggcggtgttggt |
373 |
Q |
| |
|
| || |||||||||||||||||||||||||| |
|
|
| T |
40377749 |
aggacctaattgatcactgttggcggtgttggt |
40377781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 18557376 - 18557577
Alignment:
| Q |
24 |
gtggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggt |
123 |
Q |
| |
|
||||||||| ||| |||||| |||| ||||||| | | |||||||| |||||| |||||||| |||||| || ||| ||||| ||| |||||||||| |
|
|
| T |
18557376 |
gtggcttgtgttggtttgttgttgttcgagctggatcgatttgcgctgttgttccaccttttctttgtcttcgagttt-ggcattgggatattggtgggc |
18557474 |
T |
|
| Q |
124 |
cgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtctttgggatgatcgcttttgat |
223 |
Q |
| |
|
||||||| || ||||||||||||| | |||| ||| ||||||||||| |||||| ||||| |||| |||||||||| |||| |||| |||||||| |
|
|
| T |
18557475 |
cgagttt--gggcaggttaaggtgtctactctggtgggtcgtgagttgaggggtgccgttttgatttgtgtcgggagtctatgggccgatcacttttgat |
18557572 |
T |
|
| Q |
224 |
tcgag |
228 |
Q |
| |
|
||||| |
|
|
| T |
18557573 |
tcgag |
18557577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 257 - 428
Target Start/End: Complemental strand, 2334755 - 2334583
Alignment:
| Q |
257 |
ttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatca |
356 |
Q |
| |
|
||||||| ||||||||||||||||| || ||| ||||||||||||||||||||||| || | |||||| ||||| || || || | ||||||||| |
|
|
| T |
2334755 |
ttttaggctgttgtgatgtctcctc-gagttaccgaaacttgagtggtggtcgaagctgtgcgttggaagcattatcactatcggatgtctaattgatca |
2334657 |
T |
|
| Q |
357 |
ctg-ttggcggtgttggtt-ctttgaggaactgttgttaggggatttgacattttgagggtgctggtggttttt |
428 |
Q |
| |
|
|| ||||||||||||||| ||||||||| || ||||||||| || ||||||||||||| ||||||||||| |
|
|
| T |
2334656 |
ctcattggcggtgttggtttctttgaggagctactgttaggggtttcagcattttgagggtgttggtggttttt |
2334583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 319
Target Start/End: Original strand, 25341536 - 25341831
Alignment:
| Q |
24 |
gtggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggt |
123 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||| | ||||||||| ||||| | |||| | |||||| | | ||||||||| || || || | | |
|
|
| T |
25341536 |
gtggcttgttttgatttgtttgtgctcgagctggttcg-tttgcgctattgttcaac-ttttatatgtcttaggaatttggcatctggataaaggcgcgc |
25341633 |
T |
|
| Q |
124 |
cgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtctt-tgggatgatcgcttttga |
222 |
Q |
| |
|
||| ||||| |||| |||||||| | || |||| || |||||||||| | |||||||| || ||| |||||||||| |||| |||| ||||||| |
|
|
| T |
25341634 |
cgaatttttcgacatgttaaggtttctgctctggtgcttcgtgagttcaggggtgccttgatgatgtgtgtcgggagtctggtgggccgatcacttttga |
25341733 |
T |
|
| Q |
223 |
ttcgaggtcgggagcaag-tttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacg |
319 |
Q |
| |
|
|| ||| | | ||| || ||| |||| |||||||||||||| | |||||||||||||||||| |||| ||| |||| ||||||| ||||||||||| |
|
|
| T |
25341734 |
tttgagattgagagttagatttttgacacaggtccttttaggcttttgtgatgtctcctccgactgaccggaagttgattggtggtagaagctgaacg |
25341831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 91
Target Start/End: Original strand, 39368748 - 39368815
Alignment:
| Q |
22 |
tggtggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgt |
91 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
39368748 |
tggtggcttgttttgat--gtttgtgttcgagctggtttgctgtgcgcttttgttccgccttttctctgt |
39368815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 394
Target Start/End: Original strand, 1223089 - 1223125
Alignment:
| Q |
358 |
tgttggcggtgttggttctttgaggaactgttgttag |
394 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||| |
|
|
| T |
1223089 |
tgttggcggtgttggttctttgaggagctattgttag |
1223125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 22 - 428
Target Start/End: Original strand, 16284901 - 16285306
Alignment:
| Q |
22 |
tggtggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||| |||||||| || |||||| |||||||||| ||||||||||| | ||||||||| |
|
|
| T |
16284901 |
tggtggcttgttttgatttgtttgtgttcgagctggttcactttgcactactgtttcgtcttttcgctgtctttga-ttttggcatcgagctattggtgg |
16284999 |
T |
|
| Q |
122 |
gtcgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtctt-tgggatgatcgctttt |
220 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| ||||||||||||||| |||||||||||| || || || |||||||| |||| |||||||||| |
|
|
| T |
16285000 |
gtcgagtttttggacaggttaaggtgtctgctcttgtggttcgtgagttgaggggtgcctttttgactagtgtctggagtcttgtgggccgatcgctttt |
16285099 |
T |
|
| Q |
221 |
gattcgaggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgc |
320 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||| | ||||||||||| ||| ||||||||||||||||| ||||||||| |
|
|
| T |
16285100 |
gattcgaggtcgggagcaagtttgcgactcaggtccttttaggctgttgtgacggctcctccgataaaccggaacttgagtggtggtcaaagctgaacat |
16285199 |
T |
|
| Q |
321 |
ttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgctgg |
420 |
Q |
| |
|
||||||||||||||| || ||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||| ||| |
|
|
| T |
16285200 |
ttgaagcaaaatcactatcgggtgcctaattaatcactgttggcggtgttggttctttaaggaactgttgttagggg-tttggcattttgagggtgatgg |
16285298 |
T |
|
| Q |
421 |
tggttttt |
428 |
Q |
| |
|
|||||||| |
|
|
| T |
16285299 |
tggttttt |
16285306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 22 - 428
Target Start/End: Original strand, 45181428 - 45181835
Alignment:
| Q |
22 |
tggtggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgg |
121 |
Q |
| |
|
|||||||||| |||| |||||||||||| ||| ||||| | ||||||||||| |||| |||||| |||||||||| |||||||||| ||||||||||||| |
|
|
| T |
45181428 |
tggtggcttggtttgttttgtttgtgttcgagttggttcgttttgcgctactattccaccttttttctgtctttggattttggcattgggttattggtgg |
45181527 |
T |
|
| Q |
122 |
gtcgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtctt-tgggatgatcgctttt |
220 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||| ||||||||||||||| |||||||||||| ||| | ||||||||||| |||| ||||||||| |
|
|
| T |
45181528 |
gtcgagtttttggacaggttagggtgtctgctctggtggttcgtgagttgaggggtgcctttttgacttttgtcgggagtcttgtgggccaatcgctttt |
45181627 |
T |
|
| Q |
221 |
gattcgaggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgc |
320 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||| |||||||||||||||| ||| |
|
|
| T |
45181628 |
gattcgaggtcggaagcaagtttgtgactcaggtccttttaggctgttgtgatgtctccttcgatagaccggaacttaagtggtggtcgaagctaaacat |
45181727 |
T |
|
| Q |
321 |
ttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgctgg |
420 |
Q |
| |
|
|||| ||| ||||| || ||||| |||||||||| ||||||||||||||||||||||||| |||||||||||| |||| |||||||| |||| ||| |
|
|
| T |
45181728 |
ctgaatcaatatcactatcaagtgcctaattgatcaccgttggcggtgttggttctttgaggagctgttgttagggattttggcattttgaaggtgttgg |
45181827 |
T |
|
| Q |
421 |
tggttttt |
428 |
Q |
| |
|
|||||||| |
|
|
| T |
45181828 |
tggttttt |
45181835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 25 - 428
Target Start/End: Complemental strand, 17324401 - 17323997
Alignment:
| Q |
25 |
tggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggtc |
124 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||| |||||| |||||||||||| | ||||||| |||||| |||||||||||||||||||| |
|
|
| T |
17324401 |
tggcttgttttgatttgtttgtgttcgagctggttcgctttgtgctactattccgccttttccccgtctttggattttgacatcgggttattggtgggtc |
17324302 |
T |
|
| Q |
125 |
gagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtctt-tgggatgatcgcttttgat |
223 |
Q |
| |
|
||||||||||| ||||| |||||| | || | ||||||||||||||| ||||||||||| ||| | ||| ||||||| |||| |||| |||||||| |
|
|
| T |
17324301 |
gagtttttggataggtttaggtgtctactccggtggttcgtgagttgaggggtgccttttttacttatgtcgtgagtcttgtgggccgatctcttttgat |
17324202 |
T |
|
| Q |
224 |
tcgaggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgcttg |
323 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| | | |||||||||||||||||||| || ||||| |||||||||||||||||||||| ||| |
|
|
| T |
17324201 |
tcgaggtcgggagcaagtttctgacttaggtccttttaagctattgtgatgtctcctccgatatactggaactagagtggtggtcgaagctgaacgtttg |
17324102 |
T |
|
| Q |
324 |
aagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgctggtgg |
423 |
Q |
| |
|
|||||||||||| || |||| | |||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||| |||||||| |||| |
|
|
| T |
17324101 |
aagcaaaatcactatcaggtgtcgaattgatcactgttggcggtgttggttctttgaggagttgttgtcaggggattcatcattttcagggtgctagtgg |
17324002 |
T |
|
| Q |
424 |
ttttt |
428 |
Q |
| |
|
||||| |
|
|
| T |
17324001 |
ttttt |
17323997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 267 - 428
Target Start/End: Original strand, 23087591 - 23087753
Alignment:
| Q |
267 |
ttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcgg |
366 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||||||| | |||||||||||||| |||||| |||||||| || || |||| ||||||||| ||||||||| |
|
|
| T |
23087591 |
ttgtgatgtctccttcgatagatcggaacttgagtgatagtcgaagctgaacgtttgaagtaaaatcactatcggatgcctaattgatcattgttggcgg |
23087690 |
T |
|
| Q |
367 |
tgttggttctttgaggaactgttgtta-ggggatttgacattttgagggtgctggtggttttt |
428 |
Q |
| |
|
|| ||||||||||| || ||||||||| ||||||| | |||||| |||||||||||||||||| |
|
|
| T |
23087691 |
tgatggttctttgatgagctgttgttatggggattcggcattttaagggtgctggtggttttt |
23087753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 217 - 428
Target Start/End: Original strand, 29016508 - 29016720
Alignment:
| Q |
217 |
ttttgattcgaggtcgggagc-aagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctg |
315 |
Q |
| |
|
|||| ||||||||||| |||| || ||||||| | ||||||||||||| | ||| |||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
29016508 |
ttttaattcgaggtcgagagctaattttgtgattaaggtccttttaggtttttgggatgtctcctccgatagaccggaatttgagtggtggtcgaagctc |
29016607 |
T |
|
| Q |
316 |
aacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacat-tttgaggg |
414 |
Q |
| |
|
|| | ||||||| |||||| || |||||| |||||| | ||||| ||||||||||| ||||| | |||||||||||| || | ||| |||||||| |
|
|
| T |
29016608 |
aatgtttgaagc-aaatcattatcgggtgcgtaattgaactatgttgatggtgttggttccttgagtagttgttgttaggggtttcggcatgtttgaggg |
29016706 |
T |
|
| Q |
415 |
tgctggtggttttt |
428 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29016707 |
tgctggtggttttt |
29016720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 243
Target Start/End: Complemental strand, 2782311 - 2782094
Alignment:
| Q |
27 |
gcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggtcga |
126 |
Q |
| |
|
||||| |||| ||||||| || | ||||||||| | |||||||| |||||| |||||||| || ||| | ||||||||| | || ||||||| ||| |
|
|
| T |
2782311 |
gcttgatttggtttgtttatgctcgagctggttcgatttgcgctgttgttccaccttttctttggcttacgaatttggcatctagataatggtgggccga |
2782212 |
T |
|
| Q |
127 |
gtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtct-ttgggatgatcgcttttgattc |
225 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||||| ||||||||| |||||||| || |||| ||| |||||| ||||| |||| ||||||||| |
|
|
| T |
2782211 |
gtttttggacaggttaaggtgtctgctctggtggtttgtgagttgaggggtgccttaatgatttgtgtcgagagtctggtgggacgatcacttttgattt |
2782112 |
T |
|
| Q |
226 |
gaggtcgggagcaagttt |
243 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
2782111 |
tagatcgggagccagttt |
2782094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 340 - 428
Target Start/End: Complemental strand, 35571504 - 35571416
Alignment:
| Q |
340 |
gggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgctggtggttttt |
428 |
Q |
| |
|
||||||| | ||||||||| || |||||||| |||||||||||| |||| |||||||||| | |||||||||||| || ||||||||| |
|
|
| T |
35571504 |
gggtgccgatttgatcactttttgcggtgttagttctttgaggagttgttattaggggattcggcattttgagggtactagtggttttt |
35571416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 22 - 428
Target Start/End: Complemental strand, 37129170 - 37128763
Alignment:
| Q |
22 |
tggtggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgg |
121 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||||||| | || |||||||||||||||||||| |||||||||| |||||| |||||| || ||||| | |
|
|
| T |
37129170 |
tggtggattattttgatttgtttgtgttcgagctggttcgtttggcgctactgttccgccttttttctgtctttggattttgacatcggatttttggttg |
37129071 |
T |
|
| Q |
122 |
gtcgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtctt-tgggatgatcgctttt |
220 |
Q |
| |
|
|| ||||||||||||||||| |||||| || |||| ||||||||||||||||||||||||||||| ||||| | |||||||| |||| |||||||||| |
|
|
| T |
37129070 |
gttgagtttttggacaggttcaggtgtctgctctggtggttcgtgagttgataggtgcctttttgacttgtgttaggagtcttgtgggccgatcgctttt |
37128971 |
T |
|
| Q |
221 |
gattcgaggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgc |
320 |
Q |
| |
|
||||||||||| ||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
37128970 |
gattcgaggtccggaacaagtttgtgactcaagtcctttcaggatgttgtgatgtctcctccgatagaccgaaacttgaatggtggtcgaagctgaacat |
37128871 |
T |
|
| Q |
321 |
ttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgctgg |
420 |
Q |
| |
|
|||| |||||||||| || ||||||| |||| |||| |||||||||||||||||||||||||| ||||| |||||||||| | ||||||||||||||||| |
|
|
| T |
37128870 |
ttgatgcaaaatcactatcgggtgcctaattcatcattgttggcggtgttggttctttgaggagctgtttttaggggattcggcattttgagggtgctgg |
37128771 |
T |
|
| Q |
421 |
tggttttt |
428 |
Q |
| |
|
|||||||| |
|
|
| T |
37128770 |
tggttttt |
37128763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 329
Target Start/End: Complemental strand, 4397675 - 4397369
Alignment:
| Q |
22 |
tggtggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||| ||||||||||| |||||||||| | ||||||||||| |
|
|
| T |
4397675 |
tggtggcttgttttgatttgtttgtgttcgagctg-ttcgctttgcgctactgttccgccttt-ctctgtctttggattttggcatagagttattggtgg |
4397578 |
T |
|
| Q |
122 |
gtcgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtctt-tgggatgatcgctttt |
220 |
Q |
| |
|
|||||||||||||||| ||| | |||| || | || ||||||||||||||| |||||| ||||| ||| | ||||||||||| |||| ||||||||||| |
|
|
| T |
4397577 |
gtcgagtttttggacaagtttatgtgtctgctatggtggttcgtgagttgaggggtgccattttgacttctctcgggagtcttgtgggctgatcgctttt |
4397478 |
T |
|
| Q |
221 |
gattcgaggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgc |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||| ||| |
|
|
| T |
4397477 |
gattcgaggtcgggagcaagtttgtgactcaggtccttttaggttgttgtgatgtctcctccgaaagaccggaacttgagtggtggtcgaagctgtacgt |
4397378 |
T |
|
| Q |
321 |
ttgaagcaa |
329 |
Q |
| |
|
||||||||| |
|
|
| T |
4397377 |
ttgaagcaa |
4397369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 56 - 413
Target Start/End: Original strand, 41958100 - 41958458
Alignment:
| Q |
56 |
ggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttat--tggtgggtcgagtttttggacaggttaaggtgtttgtt |
153 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| ||||||||| | |||||||||||||||||| || ||||| | ||||||||||||||||||||| || | |
|
|
| T |
41958100 |
ggttcgctttgcgctaatgttctaccttt-ctctgtcttcggattttggcatcgggttatattgatgggttggatttttggacaggttaaggtgtctgct |
41958198 |
T |
|
| Q |
154 |
ctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtctttgggatgatcgcttttgattcgaggtcgggagcaagtttgtgactcagg |
253 |
Q |
| |
|
||| ||||| ||||||||| |||||||||||| ||||| || |||||||| || || | |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41958199 |
ctggtggtttgtgagttgaagggtgcctttttgacttgtgtcaggagtcttgtggccgaccacttttgattcgaggtcggaagcaagtttgtgactcagg |
41958298 |
T |
|
| Q |
254 |
tccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattga |
353 |
Q |
| |
|
||||||||| |||||| | |||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||| || ||| ||| |||| | |
|
|
| T |
41958299 |
tccttttagtctgttgtaacgtctcctctgatagaccgaaacttgagtggtggtcgaagctgaacatttgaaacaaaatcactatcgggcgcctaattca |
41958398 |
T |
|
| Q |
354 |
tcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagg |
413 |
Q |
| |
|
|||||||||||| ||||||||||||||| | ||||||||||||||| | |||||||||| |
|
|
| T |
41958399 |
tcactgttggcgatgttggttctttgagaagttgttgttaggggattcggcattttgagg |
41958458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 24 - 289
Target Start/End: Complemental strand, 42048461 - 42048194
Alignment:
| Q |
24 |
gtggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggt |
123 |
Q |
| |
|
||||||||||||| ||||||| |||| ||||||||| | ||||| | |||||| |||| ||||||||| | | |||||| || || || ||||||| |
|
|
| T |
42048461 |
gtggcttgttttggtttgtttatgttcgagctggttcgatttgcattgttgttccaccttccctctgtcttaggaatttggcctctggataatggtgggc |
42048362 |
T |
|
| Q |
124 |
cgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagt-ctttgggatgatcgcttttga |
222 |
Q |
| |
|
|||||||||||||| |||||||||| || |||| ||||||||||||||| ||||||||| ||| || | |||||||| | |||| ||||| ||||||| |
|
|
| T |
42048361 |
cgagtttttggacatgttaaggtgtctgctctggtggttcgtgagttgagaggtgccttgttgatttctgtcgggagtccgatgggctgatcacttttga |
42048262 |
T |
|
| Q |
223 |
ttcgaggtcgggagcaag-tttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagac |
289 |
Q |
| |
|
|||||| ||||||| || ||| ||||||| ||||||||||| | | ||||||||||||||||||| |
|
|
| T |
42048261 |
ttcgagaccgggagccagttttttgactcaagtccttttaggctatatggatgtctcctccgatagac |
42048194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 318
Target Start/End: Complemental strand, 4162077 - 4161968
Alignment:
| Q |
211 |
gatcgcttttgattcgaggtcgggagcaag-tttgtgactcaggtccttttaggatg-ttgtgatgtctcctccgatagaccagaacttgagtggtggtc |
308 |
Q |
| |
|
|||| ||||||||||||| |||||||| || ||| ||| ||||||| ||||||| | || || ||||| |||||| |||| |||| |||| |||||||| |
|
|
| T |
4162077 |
gatcacttttgattcgagatcgggagccagctttttgagtcaggtctttttaggcttattttggtgtcttctccgacagactagaagttgattggtggtc |
4161978 |
T |
|
| Q |
309 |
gaagctgaac |
318 |
Q |
| |
|
||| |||||| |
|
|
| T |
4161977 |
gaatctgaac |
4161968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 22 - 428
Target Start/End: Complemental strand, 26500526 - 26500115
Alignment:
| Q |
22 |
tggtggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtg- |
120 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||| || |||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26500526 |
tggtggcttgttttgatttgtttttgttcgagctgattcgctttgtgcttttgttccgccttttctctgtctttgaattttggcatcaggttattggtgt |
26500427 |
T |
|
| Q |
121 |
-ggtcgagttttt--ggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtctt-tgggatgatcgc |
216 |
Q |
| |
|
|||||||||||| |||||||||||||||| || ||| ||||||||||||||| |||||||||||| ||||| |||| |||||| |||| |||||| |
|
|
| T |
26500426 |
gggtcgagtttttttggacaggttaaggtgtatgctctagtggttcgtgagttgaggggtgcctttttgacttgtgtcggaagtcttgtgggtcgatcgc |
26500327 |
T |
|
| Q |
217 |
ttttgattcgaggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26500326 |
ttttgattcgaggtcgggagcaagtttgtgactcaagtccttttaggctgttgtgatgtctcctccgatagaccggaacttgagtggtggtcgaagctga |
26500227 |
T |
|
| Q |
317 |
acgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtg |
416 |
Q |
| |
|
||| |||||||||||||| || |||||| ||| | ||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
26500226 |
acgtttgaagcaaaatcaatatcgggtgctttattcaccactgttggtggtgttggttctttgaggagctgttgttaggggattcagcattttgagggtc |
26500127 |
T |
|
| Q |
417 |
ctggtggttttt |
428 |
Q |
| |
|
||||||||||| |
|
|
| T |
26500126 |
ttggtggttttt |
26500115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 43 - 428
Target Start/End: Original strand, 1799001 - 1799395
Alignment:
| Q |
43 |
ttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggtcgagtttttggacaggtta |
142 |
Q |
| |
|
||||||| ||||||||| |||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1799001 |
ttgtgttcgagctggttcactttgcgctattgttctgccttttctctgtctttggattttggcatcgggttattggtgggtcgagtttttggataggtta |
1799100 |
T |
|
| Q |
143 |
aggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtctt-tgggatgatcgcttttgattcgaggtcgggagcaagt |
241 |
Q |
| |
|
|||||| || || | ||||||||||||||| |||||||||||| ||||| | |||||||| | | | |||||||||||| ||||| ||||||||| |
|
|
| T |
1799101 |
aggtgtctgctccggtggttcgtgagttgaggggtgcctttttgacttgtgtaaggagtcttgttgaccaaacgcttttgattctaggtcaggagcaagt |
1799200 |
T |
|
| Q |
242 |
ttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgg |
341 |
Q |
| |
|
||||| |||||||||||||||| | |||||||||||||||||||| |||| || ||||||||||||||||||||| || ||||||||| |||| || || |
|
|
| T |
1799201 |
ttgtgtctcaggtccttttaggctattgtgatgtctcctccgataaaccaaaatttgagtggtggtcgaagctgatcgtttgaagcaacatcattatcgg |
1799300 |
T |
|
| Q |
342 |
gtgccaaattgatcactgtt-------ggcggtgttggttctttgaggaactgttgttaggggatt-tgacattttgagggtgctggtggttttt |
428 |
Q |
| |
|
||||| |||||||||||| ||| |||||||||||||||||| ||||||||||||| || | ||||||||||||||||||||||| |
|
|
| T |
1799301 |
gtgcctttttgatcactgttggcagacggcagtgttggttctttgaggagctgttgttaggggtttcagtttttttgagggtgctggtggttttt |
1799395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 61 - 332
Target Start/End: Original strand, 10388434 - 10388706
Alignment:
| Q |
61 |
gctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggtcgagtttttggacaggttaaggtgtttgttctgatgg |
160 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||| |||||| ||||| || ||||||| || ||| || |
|
|
| T |
10388434 |
gctttgcgctactgttccgccttttctctctctttggattttggcatcgggttattgatgggtcaagttttgggacatgtaaaggtgtctgctctagtgc |
10388533 |
T |
|
| Q |
161 |
ttcgtgagttgataggtgcctttttgccttgtttcgggagtctt-tgggatgatcgcttttgattcgaggtcgggagcaagtttgtgactcaggtccttt |
259 |
Q |
| |
|
|||||||||||| | || ||||||| |||| ||| ||||||| |||| |||| |||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
10388534 |
ttcgtgagttgagggatgtctttttgacttgcgtcgagagtcttgtgggccgatcacttttgattcgaggtcgggagcaagtttatgactcaggtccttt |
10388633 |
T |
|
| Q |
260 |
taggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgcttgaagcaaaat |
332 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| || |||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
10388634 |
taggctgttgtgatgtctcctctgatagaccggatcttgagtggtggtcgaagctaaacgtttgaagcaaaat |
10388706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 24 - 331
Target Start/End: Complemental strand, 17416754 - 17416446
Alignment:
| Q |
24 |
gtggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggt |
123 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||| |||| | ||||||||||||||| | | |||||||| |||| | ||||| |
|
|
| T |
17416754 |
gtggcttgttttgatttgtttgtgttcgagctggttcgctttgcgctattgtttcaccttttctctgtcttaggaatttggcatttggtttattgtgggc |
17416655 |
T |
|
| Q |
124 |
cgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtct-ttgggatgatcgcttttga |
222 |
Q |
| |
|
||||||||||||||||||||||||| | ||| ||||||||||||||| ||||||| || | || ||| ||| || |||| |||| ||||||| |
|
|
| T |
17416654 |
cgagtttttggacaggttaaggtgtctactctagtggttcgtgagttgaggggtgcctaaatgattggtgtcgagagcctagtgggccgatcacttttga |
17416555 |
T |
|
| Q |
223 |
ttcgaggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgctt |
322 |
Q |
| |
|
|||||| || ||||| ||||| | | | ||||||||||| | |||||||||||||||||| |||||||| |||||||||||||||||||||| | || |
|
|
| T |
17416554 |
ttcgagatcaggagctagttttttgcctatgtccttttaggcttttgtgatgtctcctccgacagaccagatgttgagtggtggtcgaagctgaatgttt |
17416455 |
T |
|
| Q |
323 |
gaagcaaaa |
331 |
Q |
| |
|
||||||||| |
|
|
| T |
17416454 |
gaagcaaaa |
17416446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 23040744 - 23040625
Alignment:
| Q |
28 |
cttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggtcgag |
127 |
Q |
| |
|
||||||||||||| |||||||| ||||||||| ||||||||||||||||||| ||||||||||||| || ||||||||||||| || |||| |||||||| |
|
|
| T |
23040744 |
cttgttttgatttatttgtgttcgagctggttcgctttgcgctactgttccgtcttttctctgtctatggattttggcatcggatttttggagggtcgag |
23040645 |
T |
|
| Q |
128 |
tttttggacaggttaaggtg |
147 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
23040644 |
tttttagacaggttaaggtg |
23040625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 32 - 263
Target Start/End: Complemental strand, 40814017 - 40813785
Alignment:
| Q |
32 |
ttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggtcgagtttt |
131 |
Q |
| |
|
||||| ||||||| | || ||||||||| | |||||||||||||||| ||||||||||| ||| |||||| |||||| |||| ||||||| |||||||| |
|
|
| T |
40814017 |
ttttggtttgtttatattcgagctggttcgttttgcgctactgttccaccttttctctgccttcgaattt-ggcatctggtttatggtgggccgagtttt |
40813919 |
T |
|
| Q |
132 |
tggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtct-ttgggatgatcgcttttgattcgaggt |
230 |
Q |
| |
|
|||| |||||||||||| || ||| |||||||||| |||| ||||||||| || ||| |||||||||| |||| |||| ||||||||||||| | |
|
|
| T |
40813918 |
tggataggttaaggtgtctgctctagtggttcgtgaattgaagggtgcctttatgatttgcgtcgggagtctggtgggccgatcacttttgattcgagat |
40813819 |
T |
|
| Q |
231 |
cgggag-caagtttgtgactcaggtccttttagg |
263 |
Q |
| |
|
|||||| ||| ||| |||||||||| |||||||| |
|
|
| T |
40813818 |
cgggagccaattttttgactcaggttcttttagg |
40813785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 24 - 228
Target Start/End: Complemental strand, 37707597 - 37707395
Alignment:
| Q |
24 |
gtggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggt |
123 |
Q |
| |
|
|||||||| |||||||||||| |||| ||||||| | | |||| ||||| |||| || | ||| |||||||| || |||||| |||| ||||||||| |
|
|
| T |
37707597 |
gtggcttggtttgatttgtttctgttcgagctggatcgatttgtactactattccaccgtgtct--gtctttgagctt-ggcatctggtttttggtgggt |
37707501 |
T |
|
| Q |
124 |
cgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtct-ttgggatgatcgcttttga |
222 |
Q |
| |
|
|||||||||||| || || ||||| || |||| ||||||||||||||| ||||||||||||| ||| |||||||||| |||| |||| ||||||| |
|
|
| T |
37707500 |
cgagtttttggatagattttggtgtctgctctggtggttcgtgagttgaggggtgcctttttgctatgtgtcgggagtctggtgggccgatcacttttga |
37707401 |
T |
|
| Q |
223 |
ttcgag |
228 |
Q |
| |
|
|||||| |
|
|
| T |
37707400 |
ttcgag |
37707395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 348 - 428
Target Start/End: Original strand, 6760853 - 6760933
Alignment:
| Q |
348 |
aattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgctggtggttttt |
428 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || || |||||||||| || |||||||||| |||||||||||||| |
|
|
| T |
6760853 |
aattgatcactgttggcggtgttggttctttgatgagctattgttaggggtttcagcattttgaggatgctggtggttttt |
6760933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 29 - 428
Target Start/End: Original strand, 38387759 - 38388159
Alignment:
| Q |
29 |
ttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggtcgagt |
128 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| ||||||| ||| |||||| | |||||||| |||||| |||||| |||| ||||||||||||||||||| |
|
|
| T |
38387759 |
ttgttttgttttgtttgtgttcgagctggttcgctttgcactattgttccccattttctctatctttggattttgccatcaggttattggtgggtcgagt |
38387858 |
T |
|
| Q |
129 |
ttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtctt-tgggatgatcgcttttgattcga |
227 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||| ||| | ||||||||||| |||| ||| |||||||||| | |
|
|
| T |
38387859 |
ttttggacaggttaaggtgtttgctctggtggttcgtgagttgaggggtgcctttttgacttatgtcgggagtcttgtgggccaatcacttttgattcaa |
38387958 |
T |
|
| Q |
228 |
ggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgcttgaagc |
327 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| | |||||||||||| || ||||||| || |||||||||||||||||||||||||| ||||||| |
|
|
| T |
38387959 |
ggtcaggagcaagtttgtgactcaggtccttttaggctattgtgatgtctcatctgatagactaggacttgagtggtggtcgaagctgaacgtttgaagc |
38388058 |
T |
|
| Q |
328 |
aaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgctggtggtttt |
427 |
Q |
| |
|
|||||||| || ||||||| ||||||||||||||| ||||||||||||| ||||| |||||||||||| || | |||||||||||||||||||||||| |
|
|
| T |
38388059 |
aaaatcactatcgggtgcctaattgatcactgttgatggtgttggttcttcgaggagttgttgttaggggtttcggcattttgagggtgctggtggtttt |
38388158 |
T |
|
| Q |
428 |
t |
428 |
Q |
| |
|
| |
|
|
| T |
38388159 |
t |
38388159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 25 - 428
Target Start/End: Complemental strand, 46471 - 46066
Alignment:
| Q |
25 |
tggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggtc |
124 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||| |||||| ||||||||||||||| |||| |||||||| |||||| |||||||||||||||||||| |
|
|
| T |
46471 |
tggcttgttttgatttgtttgtgttcgagccggttcgctttgtgctactgttccgcctattctttgtctttggattttgacatcgggttattggtgggtc |
46372 |
T |
|
| Q |
125 |
gagtttttggacaggttaaggtgtttgttctgatgg-ttcgtgagttgataggtgcctttttgccttgtttcgggagtctt-tgggatgatcgcttttga |
222 |
Q |
| |
|
||||||||||||||||| | |||| || || | ||| |||||||||||| |||||||||||| ||||| ||||||||||| |||| ||||||||||| |
|
|
| T |
46371 |
gagtttttggacaggtttatgtgtctgctccggtgggttcgtgagttgaggggtgcctttttgacttgtgtcgggagtcttgtgggccaatcgcttttga |
46272 |
T |
|
| Q |
223 |
ttcgaggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgctt |
322 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| || |
|
|
| T |
46271 |
ttccaggtcgggagcaagtttctgactcaggtccttttaggttgttgtgatgtctcctccgatagactggaacttgagtggtggtcaaagttgaacgttt |
46172 |
T |
|
| Q |
323 |
gaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgctggtg |
422 |
Q |
| |
|
||||||||||||| || || | | ||||||||| ||||| | |||||||||||||||||| ||||||||||||||| |||||| |||||||| ||| |
|
|
| T |
46171 |
gaagcaaaatcactatcaggcgtcgaattgatcattgttgacagtgttggttctttgaggagttgttgttaggggattcatcattttcagggtgctagtg |
46072 |
T |
|
| Q |
423 |
gttttt |
428 |
Q |
| |
|
|||||| |
|
|
| T |
46071 |
gttttt |
46066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 22 - 428
Target Start/End: Original strand, 1578975 - 1579380
Alignment:
| Q |
22 |
tggtggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgg |
121 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||| || || ||||||||||||| ||| || | ||||||||||||| |||||||||||| ||| |||| || |
|
|
| T |
1578975 |
tggtggcttgatttga---gtttgtgttcgagttgattcgctttgcgctactattctgcttgttctctgtctttggattttggcatcgtgttcttggcgg |
1579071 |
T |
|
| Q |
122 |
gtcgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtctt-tgggatgatcgctttt |
220 |
Q |
| |
|
||| || ||||||| ||||| |||||| || |||| ||||||||||||||| | ||||| ||| ||||| | ||||||||| |||| |||| ||||| |
|
|
| T |
1579072 |
gtcaaggttttggataggtttaggtgtctgctctggtggttcgtgagttgagggatgcctcttttacttgtgttgggagtcttgtgggccgatcactttt |
1579171 |
T |
|
| Q |
221 |
gattcgaggtcgggagcaagt-ttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaac- |
318 |
Q |
| |
|
||||| | ||||||||||||| ||||||||||||||||| |||| |||||||||||||| | |||||| || |||||||||||||||||||||||| | |
|
|
| T |
1579172 |
gattcaaagtcgggagcaagtcttgtgactcaggtccttctaggttgttgtgatgtctcttgcgataggccgaaacttgagtggtggtcgaagctgagca |
1579271 |
T |
|
| Q |
319 |
gcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgttgttaggggatttgacattttgagggtgct |
418 |
Q |
| |
|
||||||||||| || ||||||||| ||| || |||||| |||| ||||||||||| || | |||||||||| || | || ||||||||| | |
|
|
| T |
1579272 |
tcttgaagcaaattcgttattgggtgcttggttgtccattgttggtggtg-tggttctttgatgagtttttgttaggggtttcggcagcttgagggtgat |
1579370 |
T |
|
| Q |
419 |
ggtggttttt |
428 |
Q |
| |
|
|||||||||| |
|
|
| T |
1579371 |
ggtggttttt |
1579380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 239 - 383
Target Start/End: Complemental strand, 4489754 - 4489610
Alignment:
| Q |
239 |
agtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccagaacttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccat |
338 |
Q |
| |
|
||||||| |||| | |||||||||| | ||||||||||||||||||||||| |||||||||||||||| |||||| |||| |||||||||||||| || |
|
|
| T |
4489754 |
agtttgtaactcggatccttttaggcttttgtgatgtctcctccgatagactggaacttgagtggtggtagaagctaaacgtttgaagcaaaatcattat |
4489655 |
T |
|
| Q |
339 |
tgggtgccaaattgatcactgttggcggtgttggttctttgagga |
383 |
Q |
| |
|
| |||| |||| | |||| |||| ||||||||||||||||||| |
|
|
| T |
4489654 |
cgagtgcttaatttaacactattggtggtgttggttctttgagga |
4489610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 22915928 - 22916008
Alignment:
| Q |
283 |
gatagaccagaacttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttgg |
363 |
Q |
| |
|
|||||||| ||| ||||||||| |||||||||||||| |||||||||| |||| || || |||||||||||||| |||||| |
|
|
| T |
22915928 |
gatagaccggaaattgagtggtagtcgaagctgaacgtttgaagcaaattcactatcggatgccaaattgatcagtgttgg |
22916008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 8e-62; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 177 - 428
Target Start/End: Original strand, 6003363 - 6003615
Alignment:
| Q |
177 |
tgcctttttgccttgtttcgggagtctt-tgggatgatcgcttttgattcgaggtcgggagcaagtttgtgactcaggtccttttaggatgttgtgatgt |
275 |
Q |
| |
|
|||||||||| |||| || |||||||| |||| ||||||||||||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||| |
|
|
| T |
6003363 |
tgcctttttgatttgtgtcaggagtcttatgggccgatcgcttttgattcgaggtcggaagcaaatttgtgtctcaggtccttttaggctgttgtgatgt |
6003462 |
T |
|
| Q |
276 |
ctcctccgatagaccagaacttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttc |
375 |
Q |
| |
|
| |||||||||||| ||||||||||||||||||||||||||| ||||||||| |||| || |||||| || ||||||||||||||||||||||| |
|
|
| T |
6003463 |
cgcctccgatagactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcaatatcaggtgccttttttatcactgttggcggtgttggttc |
6003562 |
T |
|
| Q |
376 |
tttgaggaactgttgttaggggatttgacattttgagggtgctggtggttttt |
428 |
Q |
| |
|
|||||||| ||||||||||| | || | | || |||||||||||||||||||| |
|
|
| T |
6003563 |
tttgaggagctgttgttaggagtttcggctttgtgagggtgctggtggttttt |
6003615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 29 - 235
Target Start/End: Original strand, 2570002 - 2570208
Alignment:
| Q |
29 |
ttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggtcgagt |
128 |
Q |
| |
|
||||| ||||||||| ||||| ||||||||| |||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2570002 |
ttgttgtgatttgtt-gtgttcgagctggttcgctttgtgctactgatccgccttttctctgtctttggattttggcatcgggttattggtgggtcgagg |
2570100 |
T |
|
| Q |
129 |
ttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtct-ttgggatgatcgcttttgattcga |
227 |
Q |
| |
|
|||||| ||| |||||||||||| |||| | | ||||||||||| |||||||||||| ||||| || ||||||| |||| | |||||||||||||||| |
|
|
| T |
2570101 |
ttttggtcagattaaggtgtttgctctggttgctcgtgagttgaggggtgcctttttgacttgtgtcaggagtctggtgggcttatcgcttttgattcga |
2570200 |
T |
|
| Q |
228 |
ggtcggga |
235 |
Q |
| |
|
|||||||| |
|
|
| T |
2570201 |
ggtcggga |
2570208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 280 - 424
Target Start/End: Original strand, 2570409 - 2570553
Alignment:
| Q |
280 |
tccgatagaccagaacttgagtggtggtcgaagctgaacgcttgaagcaaaatcaccattgggtgccaaattgatcactgttggcggtgttggttctttg |
379 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||| ||||||||||||||| | ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2570409 |
tccgatataccaacacttgagtggtggtcgaagctgaacctttgaagcaaaatcactttcgggtgcctttttgatcactgttggcggtgttggttctttg |
2570508 |
T |
|
| Q |
380 |
aggaactgttgttaggggatttgacattttgagggtgctggtggt |
424 |
Q |
| |
|
||| |||||||||| ||||| ||||||| ||||||||||||| |
|
|
| T |
2570509 |
aggtgttgttgttaggagatttagcattttgggggtgctggtggt |
2570553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 116 - 263
Target Start/End: Complemental strand, 27993689 - 27993540
Alignment:
| Q |
116 |
tggtgggtcgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtct-ttgggatgatc |
214 |
Q |
| |
|
||||||| |||||||||||| |||||| |||||||| |||| ||||||||||||||| |||| |||| || |||| |||||||||| ||| |||| |
|
|
| T |
27993689 |
tggtgggccgagtttttggataggttatggtgtttgctctggtggttcgtgagttgaggggtgtctttatgatttgtgtcgggagtctggtggaccgatc |
27993590 |
T |
|
| Q |
215 |
gcttttgattcgaggtcgggagcaag-tttgtgactcaggtccttttagg |
263 |
Q |
| |
|
||||||||||||| |||||||| || ||| |||| ||||| |||||||| |
|
|
| T |
27993589 |
acttttgattcgagatcgggagctagttttctgacgcaggttcttttagg |
27993540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 29 - 263
Target Start/End: Complemental strand, 46262357 - 46262123
Alignment:
| Q |
29 |
ttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggtcgagt |
128 |
Q |
| |
|
|||||||| ||||||| |||||||||||| | | |||| ||||||||||| || || |||||||| | ||||||||| || | |||||||| ||||| |
|
|
| T |
46262357 |
ttgttttggtttgtttttgtttgagctggatcgatttgagctactgttccaccgtt--tctgtcttatcaatttggcatctgggttttggtgggccgagt |
46262260 |
T |
|
| Q |
129 |
ttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtct-ttgggatgatcgcttttgattcga |
227 |
Q |
| |
|
||||||| || ||| ||||| | || | || |||||||||||| |||||||||||| | || | |||||||| |||| |||| |||||||||||| |
|
|
| T |
46262259 |
ttttggatagtttatggtgtcttctccggtgattcgtgagttgaggggtgcctttttgattggtgttgggagtctggtgggccgatcacttttgattcga |
46262160 |
T |
|
| Q |
228 |
ggtcgggagcaagttt-gtgactcaggtccttttagg |
263 |
Q |
| |
|
| |||||||| ||||| |||||| ||| |||||||| |
|
|
| T |
46262159 |
gatcgggagctagtttcttgactctggttcttttagg |
46262123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 38 - 243
Target Start/End: Complemental strand, 35206921 - 35206718
Alignment:
| Q |
38 |
tttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggtcgagtttttggaca |
137 |
Q |
| |
|
||||||| |||| ||||||| | | ||||| || |||||| |||||||||||||||| | |||||||| ||| |||||||||| ||| |||||||| |
|
|
| T |
35206921 |
tttgtttttgttcgagctggatcggtttgcactgttgttccatcttttctctgtctttg-agtttggcattgggatattggtgggccga--atttggaca |
35206825 |
T |
|
| Q |
138 |
ggttaaggtgtttgttctgatggttcgtgagttgataggtgcctttttgccttgtttcgggagtct-ttgggatgatcgcttttgattcgaggtcgggag |
236 |
Q |
| |
|
|||||||||| || |||| ||| || |||||||| ||| ||||||| |||| | |||||||| |||| |||| |||||||| |||| ||||||| |
|
|
| T |
35206824 |
agttaaggtgtctgctctggtgggtcatgagttgaggggtcccttttttatttgtgttgggagtctggtgggccgatcacttttgatccgagatcgggag |
35206725 |
T |
|
| Q |
237 |
caagttt |
243 |
Q |
| |
|
| ||||| |
|
|
| T |
35206724 |
ctagttt |
35206718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 25153081 - 25153193
Alignment:
| Q |
38 |
tttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggtcgagtttttggaca |
137 |
Q |
| |
|
||||||| |||| ||||||||| ||| || | ||||||| ||| |||| ||| | ||||||| |||||| | || |||||| |||||||||||||| |
|
|
| T |
25153081 |
tttgtttatgttcgagctggttcaatttacgttgctgttccacctattctatgtttatgaattt-ggcatctgaataatggtggtccgagtttttggaca |
25153179 |
T |
|
| Q |
138 |
ggttaaggtgtttg |
151 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
25153180 |
ggttaaggtgtttg |
25153193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 24 - 182
Target Start/End: Original strand, 12129057 - 12129212
Alignment:
| Q |
24 |
gtggcttgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctttgaattttggcatcgggttattggtgggt |
123 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| ||||||| |||||||| ||||||||| ||||| ||| |||||||||||| || ||||||| |
|
|
| T |
12129057 |
gtggcttgttttgatttgtttttgttcgagctggtttgatttgcgccactgttccaccttttctccgtcttcgaa-tttggcatcgggataatggtgggc |
12129155 |
T |
|
| Q |
124 |
cgagtttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgcctt |
182 |
Q |
| |
|
|||| |||||||| ||| |||||| | |||| ||| |||||||||||| |||||||| |
|
|
| T |
12129156 |
cgag--tttggacaagtttaggtgtcttctctggtgggtcgtgagttgatgggtgcctt |
12129212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 30 - 185
Target Start/End: Complemental strand, 7546665 - 7546513
Alignment:
| Q |
30 |
tgttttgatttgtttgtgtttgagctggtttgctttgcgctactgttccgccttttctctgtctt-tgaattttggcatcgggttattggtgggtcgagt |
128 |
Q |
| |
|
||||||| ||||||| |||||||||||| | | ||||||||| |||||| || ||||| ||||| ||||||| ||||| || | ||| |||||||||| |
|
|
| T |
7546665 |
tgttttggtttgtttctgtttgagctggatcgatttgcgctattgttccaccgtttct--gtcttatgaattt-ggcatatgggttttg-tgggtcgagt |
7546570 |
T |
|
| Q |
129 |
ttttggacaggttaaggtgtttgttctgatggttcgtgagttgataggtgccttttt |
185 |
Q |
| |
|
||||||| |||||| ||||| || |||| ||||||||||||||| ||||||||||| |
|
|
| T |
7546569 |
ttttggataggttatggtgtctgctctggtggttcgtgagttgaggggtgccttttt |
7546513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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