View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2879_low_3 (Length: 324)
Name: NF2879_low_3
Description: NF2879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2879_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 39474845 - 39474549
Alignment:
| Q |
11 |
gaacctgtgagaaataagagaagacttaaaatcacaaaattcaccaaagggaattggatgatttttcagaagtaaccaaatcttatgtacacgaacccta |
110 |
Q |
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| T |
39474845 |
gaacttgtgacaaataagagaagagttaaaatcataaaattcaccaaagggaattggatgatttttcagaagtaaccaaattttatgtacacgaacccca |
39474746 |
T |
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| Q |
111 |
gtactcttctagttcatcagatgcatagaagataatatatttcacagaaaacatgtacatcctaaataagcaaataaaaataacaatcaaaagtatccat |
210 |
Q |
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| T |
39474745 |
gtactcttctagttcatcagacgcatagaagataatatatttcacagaaaacatgtacatcctaaataagcaaataaaaataacaatcaaaagtatccat |
39474646 |
T |
|
| Q |
211 |
atggtttcatccaatcacatcataacaatactataatccaaaacactgagaatgacaagactaggaactacactgtgggtacttgatatatacttac |
307 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39474645 |
atggtttcatccaatcgcatcataacaatactataatccaaaatactgagaatgacaagactaggaactacactgtgggtacttgatatatacttac |
39474549 |
T |
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