View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2880-Insertion-1 (Length: 719)

Name: NF2880-Insertion-1
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2880-Insertion-1
NF2880-Insertion-1
[»] chr3 (15 HSPs)
chr3 (478-719)||(34705601-34705842)
chr3 (151-329)||(52125939-52126118)
chr3 (94-325)||(18319916-18320167)
chr3 (94-325)||(46920418-46920669)
chr3 (94-325)||(11031254-11031505)
chr3 (325-480)||(46920713-46920870)
chr3 (325-482)||(11031051-11031210)
chr3 (325-479)||(18320211-18320367)
chr3 (339-477)||(52125745-52125886)
chr3 (8-65)||(11031561-11031618)
chr3 (8-65)||(18319803-18319860)
chr3 (8-65)||(46920305-46920362)
chr3 (30-87)||(52126190-52126247)
chr3 (423-482)||(37609250-37609309)
chr3 (421-478)||(8082496-8082553)
[»] chr4 (13 HSPs)
chr4 (94-325)||(34967421-34967653)
chr4 (94-293)||(27742400-27742600)
chr4 (94-325)||(54207548-54207799)
chr4 (94-325)||(9117755-9118006)
chr4 (325-480)||(54207843-54208000)
chr4 (325-475)||(9118050-9118202)
chr4 (325-479)||(27742168-27742327)
chr4 (325-478)||(34967697-34967851)
chr4 (8-87)||(34967290-34967370)
chr4 (8-87)||(27742651-27742730)
chr4 (8-65)||(9117642-9117699)
chr4 (8-65)||(54207435-54207492)
chr4 (420-477)||(30199956-30200013)
[»] chr1 (6 HSPs)
chr1 (151-329)||(51083719-51083898)
chr1 (94-325)||(38007311-38007562)
chr1 (325-480)||(38007606-38007763)
chr1 (339-478)||(51083951-51084092)
chr1 (8-65)||(38007198-38007255)
chr1 (30-87)||(51083590-51083647)
[»] chr8 (15 HSPs)
chr8 (94-325)||(3428791-3429042)
chr8 (94-325)||(11465894-11466145)
chr8 (325-477)||(11466189-11466343)
chr8 (325-476)||(3429086-3429239)
chr8 (390-455)||(6228067-6228132)
chr8 (8-65)||(11465781-11465838)
chr8 (8-65)||(3428678-3428735)
chr8 (445-479)||(6227960-6227994)
chr8 (421-478)||(38526483-38526540)
chr8 (421-481)||(38567668-38567728)
chr8 (420-478)||(20267449-20267507)
chr8 (420-478)||(21054078-21054136)
chr8 (421-478)||(9686364-9686421)
chr8 (420-489)||(18167144-18167213)
chr8 (420-489)||(18630698-18630767)
[»] chr7 (9 HSPs)
chr7 (181-325)||(16849577-16849721)
chr7 (151-260)||(31738560-31738669)
chr7 (243-329)||(31738460-31738547)
chr7 (8-65)||(16849879-16849936)
chr7 (325-477)||(16849393-16849533)
chr7 (399-484)||(31738260-31738345)
chr7 (30-87)||(31738741-31738798)
chr7 (94-184)||(16849736-16849823)
chr7 (421-478)||(31293022-31293079)
[»] chr2 (1 HSPs)
chr2 (421-480)||(15805905-15805964)
[»] chr5 (1 HSPs)
chr5 (421-478)||(25898072-25898129)


Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 478 - 719
Target Start/End: Original strand, 34705601 - 34705842
Alignment:
Q  478 taagtttatgaagtcattacggctccatcacggtttgttataacataagaagaggctctaggatgacatggaaggaatgatggctacattttggcgatga 577  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34705601 taagtttatgaagtcattacggccccatcacggtttgttacaacataagaagaggctctaagatgacatggaaggaatgatggctacattttggcgatga 34705700  T
Q  578 aacnnnnnnnnnnaagaaaggttttgaaacttgtttggagagctcaatgaaaataattatttcaagtgttgcttgttttttatcgagtcttcgtgaatat 677  Q
    |||          ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34705701 aacttttttttttaagaaaggttttgaaacttatttggagagctcaatgaaaataattatttcaagtgttgcttgttttttatcgagtcttcgtgaatat 34705800  T
Q  678 atgctaataaattggatcaatttattgttggtattgtttgta 719  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  34705801 atgctaataagttggatcaatttattgttggtattgtttgta 34705842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 151 - 329
Target Start/End: Complemental strand, 52126118 - 52125939
Alignment:
Q  151 tgtctattcaagttttcaacaatattgttctattctatcaatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttata 250  Q
    ||||||||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  52126118 tgtctattcaaattttcaacaatatttttctattctatcaattaactatatgtaaacataattttattttatggtgtattttgaaatgcttcaagttata 52126019  T
Q  251 atgagaataaaatatagt-aaaataaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcatattt 329  Q
    || |||||||||||| || |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  52126018 atcagaataaaatattgtaaaaataaattcaaattgatttagaaacagggtaggggtatttttgtaactgtatcatattt 52125939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 94 - 325
Target Start/End: Original strand, 18319916 - 18320167
Alignment:
Q  94 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctatt------- 184  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       |||||  |||||||||||||||||||||||||||||||||||           
T  18319916 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaacatatttatgtgtctattcaagttttcaacaatattgttctattatatcaa 18320015  T
Q  185 -----------ctatcaatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaat 273  Q
               ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  18320016 tcaactatattctatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaat 18320115  T
Q  274 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18320116 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 18320167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 94 - 325
Target Start/End: Original strand, 46920418 - 46920669
Alignment:
Q  94 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctatt------- 184  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       |||||  |||||||||||||||||||||||||||||||||||           
T  46920418 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgtctattcaagttttcaacaatattgttctattataacaa 46920517  T
Q  185 -----------ctatcaatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaat 273  Q
               ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  46920518 tcaactatattctatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaat 46920617  T
Q  274 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46920618 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 46920669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 94 - 325
Target Start/End: Complemental strand, 11031505 - 11031254
Alignment:
Q  94 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctattctatcaa 191  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       |||||  ||||||||| ||||||||||||||||||||||||| ||||||    
T  11031505 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgtctattaaagttttcaacaatattgttctattatatcaa 11031406  T
Q  192 tcaactatat------------------gaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaat 273  Q
    ||||||||||                  |||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  11031405 tcaactatattttatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaat 11031306  T
Q  274 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11031305 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 11031254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 325 - 480
Target Start/End: Original strand, 46920713 - 46920870
Alignment:
Q  325 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 422  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||| ||||||||||||    
T  46920713 tatttatgggaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaacttcccactactttat 46920812  T
Q  423 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaa 480  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46920813 tcccaggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaa 46920870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 325 - 482
Target Start/End: Complemental strand, 11031210 - 11031051
Alignment:
Q  325 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 422  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||| ||||||||||||    
T  11031210 tatttatgggaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaacttcccactactttat 11031111  T
Q  423 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaagt 482  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  11031110 tcccaggtaagttattcctgggattaatttatgaatccctgaaacaaacgtctcctaagt 11031051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 325 - 479
Target Start/End: Original strand, 18320211 - 18320367
Alignment:
Q  325 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 422  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||| ||||||||||||    
T  18320211 tatttatgggaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaacttcccactactttat 18320310  T
Q  423 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgcccccta 479  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  18320311 tcccaggtaagttattcctggaattaatttatgaattcctgaaacaaacgcccccta 18320367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 339 - 477
Target Start/End: Complemental strand, 52125886 - 52125745
Alignment:
Q  339 tttttgaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnn---aaatacccaggaataaactttccactactttattcccgggtaagtt 435  Q
    |||||||||||||||||| | ||||| ||||||||||||||||           ||||| || ||||||||||| |||||||||||||||| ||||||||    
T  52125886 tttttgaaaatattcctgaggaattagaatactaaccaaacactttttttttcaaaatatccgggaataaacttcccactactttattcccaggtaagtt 52125787  T
Q  436 attcctgggattaatttatgaatccctgaaacaaacgccccc 477  Q
    ||||| | |||||||||||||||||  |||||||||||||||    
T  52125786 attcccgagattaatttatgaatcctcgaaacaaacgccccc 52125745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 11031618 - 11031561
Alignment:
Q  8 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11031618 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 11031561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 18319803 - 18319860
Alignment:
Q  8 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18319803 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 18319860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 46920305 - 46920362
Alignment:
Q  8 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46920305 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 46920362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 52126247 - 52126190
Alignment:
Q  30 ctaccaccatgttttttcaactgccaattaatttctcaatacactgaacgtgttgatt 87  Q
    |||||||||||||||||||||||||||||||||| || || || ||||||||||||||    
T  52126247 ctaccaccatgttttttcaactgccaattaatttttccatgcaatgaacgtgttgatt 52126190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 423 - 482
Target Start/End: Original strand, 37609250 - 37609309
Alignment:
Q  423 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaagt 482  Q
    ||||||||| ||||||||||||| |||||| ||  ||||  |||||||||||||||||||    
T  37609250 tcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccctaagt 37609309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 478
Target Start/End: Original strand, 8082496 - 8082553
Alignment:
Q  421 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccct 478  Q
    ||||||||||| ||||||||||||| |||||| ||  ||||  |||||||||||||||    
T  8082496 attcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccct 8082553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 5e-98; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 94 - 325
Target Start/End: Original strand, 34967421 - 34967653
Alignment:
Q  94 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctattctatcaa 191  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||       |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  34967421 atgtaatccatctattatttctttatgttttttttggtttgtgcaaaaaaatatttatgtgtctattcaagttttcaacaatattgttctattctatcaa 34967520  T
Q  192 tcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaataaattcaaattgatttag 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34967521 tcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagt-aaataaattcaaattgatttag 34967619  T
Q  292 aaacaaggtagaggtatttttgtaactgtatcat 325  Q
    ||||||||||||||||||||| ||||||||||||    
T  34967620 aaacaaggtagaggtatttttataactgtatcat 34967653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 94 - 293
Target Start/End: Complemental strand, 27742600 - 27742400
Alignment:
Q  94 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctattctatcaa 191  Q
    ||||||||||||| ||||||||||||||||||||||||||||||       |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  27742600 atgtaatccatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgtctattcaagttttcaacaatattgttctattctatcaa 27742501  T
Q  192 tcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaataaattcaaattgatttag 291  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  27742500 tcaaatatatgaaaacataattttattttatgatgtattttgaaatgcttcaagttataatgagaataaaatatagt-aaatagattcaaattgatttag 27742402  T
Q  292 aa 293  Q
    ||    
T  27742401 aa 27742400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 94 - 325
Target Start/End: Original strand, 54207548 - 54207799
Alignment:
Q  94 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctattctatc-- 189  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       |||||  ||||||||| ||||||||||||||||||||||||| ||||      
T  54207548 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgtctattaaagttttcaacaatattgttctattatatcaa 54207647  T
Q  190 ----------------aatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaat 273  Q
                    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  54207648 tcaactatattttatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaat 54207747  T
Q  274 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54207748 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 54207799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 94 - 325
Target Start/End: Original strand, 9117755 - 9118006
Alignment:
Q  94 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctattctatc-- 189  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       |||||  ||||||||| ||||||||||||||||||||||||| ||||      
T  9117755 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgtctattaaagttttcaacaatattgttctattatatcaa 9117854  T
Q  190 ----------------aatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaat 273  Q
                    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  9117855 tcaactatattttatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaat 9117954  T
Q  274 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 325  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9117955 aaattcaaattgatttagaaataaggtagaggtatttttgtaactgtatcat 9118006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 325 - 480
Target Start/End: Original strand, 54207843 - 54208000
Alignment:
Q  325 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 422  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||    
T  54207843 tatttatgggaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaactttccactactttat 54207942  T
Q  423 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaa 480  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54207943 tcccaggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaa 54208000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 325 - 475
Target Start/End: Original strand, 9118050 - 9118202
Alignment:
Q  325 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 422  Q
    |||||||| |||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||| ||||||||||||    
T  9118050 tatttatgagaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaacttcccactactttat 9118149  T
Q  423 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccc 475  Q
    |  | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9118150 tttcaggtaagttattcctgggattaatttatgaatccctgaaacaaacgccc 9118202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 325 - 479
Target Start/End: Complemental strand, 27742327 - 27742168
Alignment:
Q  325 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnn----aaatacccaggaataaactttccactactt 419  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||            |||||||||  ||||||||| |||||||||    
T  27742327 tatttatgggaacatttttcgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttttaaaaatacccataaataaacttcccactactt 27742228  T
Q  420 tattcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgcccccta 479  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27742227 tattcccaggtaagttattcctggaattaatttatgaatccctgaaacaaacgcccccta 27742168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 325 - 478
Target Start/End: Original strand, 34967697 - 34967851
Alignment:
Q  325 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 422  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||         ||| |||||| |||||||||| ||||||||||||    
T  34967697 tatttatgggaacattttttgaaaatattcctgggaaattaaaatactaaccaaacatttttttttaaaatacccatgaataaacttcccactactttat 34967796  T
Q  423 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccct 478  Q
    ||| || |||||||||||||| |||||||||||||||  |||||||||||||||||    
T  34967797 tccagg-taagttattcctggaattaatttatgaatctatgaaacaaacgccccct 34967851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 34967290 - 34967370
Alignment:
Q  8 gccttgctacatgaaaaccccactacca-ccatgttttttcaactgccaattaatttctcaatacactgaacgtgttgatt 87  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34967290 gccttgctacatgaaaaccccactaccaaccatgttttttcaactgccaattaatttctcaatacactgaacgtgttgatt 34967370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 8 - 87
Target Start/End: Complemental strand, 27742730 - 27742651
Alignment:
Q  8 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttctcaatacactgaacgtgttgatt 87  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  27742730 gccttgctacatgaaaaccccactaccaccatgtattttcaactaccaattaatttctcaatacactgaacgtgttgatt 27742651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 9117642 - 9117699
Alignment:
Q  8 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9117642 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 9117699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 54207435 - 54207492
Alignment:
Q  8 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54207435 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 54207492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 477
Target Start/End: Complemental strand, 30200013 - 30199956
Alignment:
Q  420 tattcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccc 477  Q
    |||||| ||| |||||||||| |||| |||||| || |||| ||||||||||||||||    
T  30200013 tattcctgggaaagttattccagggaataatttttgcatccgtgaaacaaacgccccc 30199956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 6e-73; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 151 - 329
Target Start/End: Original strand, 51083719 - 51083898
Alignment:
Q  151 tgtctattcaagttttcaacaatattgttctattctatcaatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttata 250  Q
    ||||||||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  51083719 tgtctattcaaattttcaacaatatttttctattctatcaattaactatatgtaaacataattttattttatggtgtattttgaaatgcttcaagttata 51083818  T
Q  251 atgagaataaaatatagt-aaaataaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcatattt 329  Q
    || ||||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  51083819 atcagaataaaatatagtaaaaataaattcaaattgatttaaaaacagggtaggggtatttttgtaactgtatcatattt 51083898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 94 - 325
Target Start/End: Original strand, 38007311 - 38007562
Alignment:
Q  94 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctattctatc-- 189  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       |||||  ||||||||| ||||||||||||||||||||||||| ||||      
T  38007311 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgtctattaaagttttcaacaatattgttctattatatcaa 38007410  T
Q  190 ----------------aatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaat 273  Q
                    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  38007411 tcaactatattttatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaat 38007510  T
Q  274 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38007511 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 38007562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 325 - 480
Target Start/End: Original strand, 38007606 - 38007763
Alignment:
Q  325 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 422  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||    
T  38007606 tatttatgggaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaactttccactactttat 38007705  T
Q  423 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaa 480  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38007706 tcccaggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaa 38007763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 339 - 478
Target Start/End: Original strand, 51083951 - 51084092
Alignment:
Q  339 tttttgaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnn--aaatacccaggaataaactttccactactttattcccgggtaagtta 436  Q
    |||||||||||||||||| | ||||| ||||||||||||||||          ||||| |||||||||||||| ||||||||||||||||  ||||||||    
T  51083951 tttttgaaaatattcctgaggaattagaatactaaccaaacacttttttttcaaaatatccaggaataaacttcccactactttattcccatgtaagtta 51084050  T
Q  437 ttcctgggattaatttatgaatccctgaaacaaacgccccct 478  Q
    |||| |||||||||||||||||||| ||||||||| ||||||    
T  51084051 ttcccgggattaatttatgaatccccgaaacaaacaccccct 51084092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 38007198 - 38007255
Alignment:
Q  8 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38007198 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 38007255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 51083590 - 51083647
Alignment:
Q  30 ctaccaccatgttttttcaactgccaattaatttctcaatacactgaacgtgttgatt 87  Q
    ||||||||||||||||||||||||||||||||||||| || || ||| | ||||||||    
T  51083590 ctaccaccatgttttttcaactgccaattaatttctccatgcaatgaccatgttgatt 51083647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 4e-71; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 94 - 325
Target Start/End: Original strand, 3428791 - 3429042
Alignment:
Q  94 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctatt------- 184  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       |||||  |||||||||||||||||||||||||||||||||||           
T  3428791 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgtctattcaagttttcaacaatattgttctattataacaa 3428890  T
Q  185 -----------ctatcaatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaat 273  Q
               ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  3428891 tcaactatattctatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaat 3428990  T
Q  274 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3428991 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 3429042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 94 - 325
Target Start/End: Original strand, 11465894 - 11466145
Alignment:
Q  94 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntattt--gtgtctattcaagttttcaacaatattgttctatt------- 184  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       |||||  |||||||||||||||||||||||||||||||||||           
T  11465894 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgtctattcaagttttcaacaatattgttctattatatcaa 11465993  T
Q  185 -----------ctatcaatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaat 273  Q
               ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| |||||||||    
T  11465994 tcaactatattctatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaat 11466093  T
Q  274 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11466094 aaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcat 11466145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 325 - 477
Target Start/End: Original strand, 11466189 - 11466343
Alignment:
Q  325 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 422  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||| ||||||||||||    
T  11466189 tatttatgggaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaacttcccactactttat 11466288  T
Q  423 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccc 477  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11466289 tcccaggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccc 11466343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 325 - 476
Target Start/End: Original strand, 3429086 - 3429239
Alignment:
Q  325 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 422  Q
    ||||||||| ||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||| ||||||||||||    
T  3429086 tatttatggaaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaacttcccactactttat 3429185  T
Q  423 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgcccc 476  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3429186 tcccaggtaaattattcctgggattaatttatgaatccctgaaacaaacgcccc 3429239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 390 - 455
Target Start/End: Original strand, 6228067 - 6228132
Alignment:
Q  390 aaatacccaggaataaactttccactactttattcccgggtaagttattcctgggattaatttatg 455  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  6228067 aaatacccaggaataaactttccactactttattcacgggtaagttattcctaggattaatttatg 6228132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 11465781 - 11465838
Alignment:
Q  8 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11465781 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 11465838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 3428678 - 3428735
Alignment:
Q  8 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 65  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3428678 gccttgctacatgaaaaccccactaccaccatgttttttcaactaccaattaatttct 3428735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 445 - 479
Target Start/End: Complemental strand, 6227994 - 6227960
Alignment:
Q  445 attaatttatgaatccctgaaacaaacgcccccta 479  Q
    |||||||||||||||||||||||||||||||||||    
T  6227994 attaatttatgaatccctgaaacaaacgcccccta 6227960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 421 - 478
Target Start/End: Complemental strand, 38526540 - 38526483
Alignment:
Q  421 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccct 478  Q
    ||||||||||| ||||||||||||| |||||||||  ||||  |||||||||||||||    
T  38526540 attcccgggtatgttattcctgggaataatttatgtttcccaaaaacaaacgccccct 38526483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 421 - 481
Target Start/End: Original strand, 38567668 - 38567728
Alignment:
Q  421 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaag 481  Q
    ||||||||||| ||||||||||||| |||||| ||  ||||  ||||||||||||||||||    
T  38567668 attcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccctaag 38567728  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 420 - 478
Target Start/End: Original strand, 20267449 - 20267507
Alignment:
Q  420 tattcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccct 478  Q
    |||||| ||| |||||||||| |||| |||||| || |||| |||||||||||||||||    
T  20267449 tattcctgggaaagttattccagggaataatttttgcatccgtgaaacaaacgccccct 20267507  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 420 - 478
Target Start/End: Original strand, 21054078 - 21054136
Alignment:
Q  420 tattcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccct 478  Q
    |||||| ||| |||||||||| |||| |||||| || |||| |||||||||||||||||    
T  21054078 tattcctgggaaagttattccagggaataatttttgcatccgtgaaacaaacgccccct 21054136  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 478
Target Start/End: Complemental strand, 9686421 - 9686364
Alignment:
Q  421 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccct 478  Q
    ||||||||||| ||||||||||||| |||||| ||  ||||  |||||||||||||||    
T  9686421 attcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccct 9686364  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 489
Target Start/End: Original strand, 18167144 - 18167213
Alignment:
Q  420 tattcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaagtttatgaa 489  Q
    |||||| ||| | |||||||| |||| |||||| || |||| ||||||||||||| ||||||||| ||||    
T  18167144 tattcctgggaatgttattccagggaataatttttgtatccatgaaacaaacgcctcctaagtttgtgaa 18167213  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 489
Target Start/End: Original strand, 18630698 - 18630767
Alignment:
Q  420 tattcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaagtttatgaa 489  Q
    |||||| ||| | |||||||| |||| |||||| || |||| ||||||||||||| ||||||||| ||||    
T  18630698 tattcctgggaatgttattccagggaataatttttgtatccatgaaacaaacgcctcctaagtttgtgaa 18630767  T

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Target: chr7 (Bit Score: 129; Significance: 2e-66; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 181 - 325
Target Start/End: Complemental strand, 16849721 - 16849577
Alignment:
Q  181 tattctatcaatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttataatgagaataaaatatagtaaaataaattca 280  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||    
T  16849721 tattctatcaatcaactatatgaaaacataattttatttcatggtgtattttcaaatgcttcaagttataatgaaaataaaatgtagtaaaataaattca 16849622  T
Q  281 aattgatttagaaacaaggtagaggtatttttgtaactgtatcat 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  16849621 aattgatttagaaacaaggtagaggtatttttgtaactgtatcat 16849577  T

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Target: chr7; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 31738669 - 31738560
Alignment:
Q  151 tgtctattcaagttttcaacaatattgttctattctatcaatcaactatatgaaaacataattttattttatggtgtattttgaaatgcttcaagttata 250  Q
    ||||||||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  31738669 tgtctattcaaattttcaacaatatttttctattctatcaattaactatatgtaaacataattttattttatggtgtattttgaaatgcttcaagttata 31738570  T
Q  251 atgagaataa 260  Q
    || |||||||    
T  31738569 atcagaataa 31738560  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 243 - 329
Target Start/End: Complemental strand, 31738547 - 31738460
Alignment:
Q  243 aagttataatgagaataaaatatagtaaaa-taaattcaaattgatttagaaacaaggtagaggtatttttgtaactgtatcatattt 329  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  31738547 aagttataatcagaataaaatatagtaaaaataaattcaaattgatttagaaacagggtaggggtatttttgtaactgtatcatattt 31738460  T

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Target: chr7; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 8 - 65
Target Start/End: Complemental strand, 16849936 - 16849879
Alignment:
Q  8 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 65  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16849936 gccttgctacatgaaaaccccactaccaccatgttttttcaactgccaattaatttct 16849879  T

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Target: chr7; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 325 - 477
Target Start/End: Complemental strand, 16849533 - 16849393
Alignment:
Q  325 tatttatgggaacattttt-gaaaatattcctgggaaattaaaatactaaccaaacacnnnnnnnnaaa-tacccaggaataaactttccactactttat 422  Q
    ||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||        ||| ||||||||||||||||| |||             
T  16849533 tatttatgggaacattttttgaaaatattcctgaaaaattaaaatactaaccaaacacttttttttaaaatacccaggaataaacttccca--------- 16849443  T
Q  423 tcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccc 477  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16849442 -----ggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccc 16849393  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 399 - 484
Target Start/End: Complemental strand, 31738345 - 31738260
Alignment:
Q  399 ggaataaactttccactactttattcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaagttt 484  Q
    ||||||||||| |||||||||||||||| | ||||||||| | |||||||||||||||||||| ||||||||||| |||| |||||    
T  31738345 ggaataaacttcccactactttattcccagataagttatttccgggattaatttatgaatccccgaaacaaacgctcccttagttt 31738260  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 31738798 - 31738741
Alignment:
Q  30 ctaccaccatgttttttcaactgccaattaatttctcaatacactgaacgtgttgatt 87  Q
    ||||||||||||||||||||||||||||||||||||| || || ||||||||||||||    
T  31738798 ctaccaccatgttttttcaactgccaattaatttctccatgcaatgaacgtgttgatt 31738741  T

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Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 16849823 - 16849736
Alignment:
Q  94 atgtaatccatcttttatttctttatgttctttttggtttgtgcnnnnnnntatttgtgtctattcaagttttcaacaatattgttctatt 184  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||       ||||| ||| |   ||||||||||||||||||||||||||    
T  16849823 atgtaattcatctattatttctttatgttctttttggtttgtgcaaaaaaatatttatgtgt---caagttttcaacaatattgttctatt 16849736  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 478
Target Start/End: Complemental strand, 31293079 - 31293022
Alignment:
Q  421 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccct 478  Q
    ||||||||||| ||||||||||||| |||||| ||  ||||  |||||||||||||||    
T  31293079 attcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccct 31293022  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 421 - 480
Target Start/End: Original strand, 15805905 - 15805964
Alignment:
Q  421 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccctaa 480  Q
    ||||||||||| ||||||||||||| |||||| ||  ||||  |||||||||||||||||    
T  15805905 attcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccctaa 15805964  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 421 - 478
Target Start/End: Original strand, 25898072 - 25898129
Alignment:
Q  421 attcccgggtaagttattcctgggattaatttatgaatccctgaaacaaacgccccct 478  Q
    ||||||||||| ||||||||||||| |||||| ||  ||||  |||||||||||||||    
T  25898072 attcccgggtatgttattcctgggaataatttgtgtttcccaaaaacaaacgccccct 25898129  T

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