View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880-Insertion-7 (Length: 111)
Name: NF2880-Insertion-7
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880-Insertion-7 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 100; Significance: 6e-50; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 6e-50
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 2516503 - 2516400
Alignment:
| Q |
8 |
gcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatatgaaactccatggccgcatacctgtgtgtggaatgatctc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2516503 |
gcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactcttgaatatgaaactccatggccgcatacctgtgtgtggaatgatctc |
2516404 |
T |
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| Q |
108 |
acag |
111 |
Q |
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|||| |
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| T |
2516403 |
acag |
2516400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 8e-43
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 2429509 - 2429612
Alignment:
| Q |
8 |
gcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatatgaaactccatggccgcatacctgtgtgtggaatgatctc |
107 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
2429509 |
gcattgacatttactttgagaatgtggggggaaagacacttgatgctgtactcttgaatatgaaactccatgggcggatacctgtgtgtggaatgatctc |
2429608 |
T |
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| Q |
108 |
acag |
111 |
Q |
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|||| |
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| T |
2429609 |
acag |
2429612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 88; E-Value: 8e-43
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 2432491 - 2432594
Alignment:
| Q |
8 |
gcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatatgaaactccatggccgcatacctgtgtgtggaatgatctc |
107 |
Q |
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| T |
2432491 |
gcattgacatttactttgagaatgttgggggaaagacacttgacgctgtactcttgaatatgaaactccatggccgcatacctgtaagtggaatgatctc |
2432590 |
T |
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| Q |
108 |
acag |
111 |
Q |
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|||| |
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| T |
2432591 |
acag |
2432594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 7e-31
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 2435852 - 2435955
Alignment:
| Q |
8 |
gcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatatgaaactccatggccgcatacctgtgtgtggaatgatctc |
107 |
Q |
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|||||||||||||||||||||||||||| || || ||||||||||||||||| | |||||||| | ||||||||||||||||||| ||||||||||||| |
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| T |
2435852 |
gcattgacatttactttgagaatgttggtgggaaaacacttgatgctgtacttttgaatatgagagtccatggccgcatacctgtaagtggaatgatctc |
2435951 |
T |
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| Q |
108 |
acag |
111 |
Q |
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|||| |
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| T |
2435952 |
acag |
2435955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 10 - 111
Target Start/End: Complemental strand, 2512230 - 2512129
Alignment:
| Q |
10 |
attgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatatgaaactccatggccgcatacctgtgtgtggaatgatctcac |
109 |
Q |
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|||||| ||||||||||||| ||||| || |||||||||||||| ||||||| ||| |||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
2512230 |
attgacgtttactttgagaacgttggaggcaagacacttgatgccgtactcttgaacatgaaactacatggtcgcatacctgtgtgtggaatgatctcac |
2512131 |
T |
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| Q |
110 |
ag |
111 |
Q |
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|| |
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| T |
2512130 |
ag |
2512129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 2496930 - 2496827
Alignment:
| Q |
8 |
gcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatatgaaactccatggccgcatacctgtgtgtggaatgatctc |
107 |
Q |
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||||||| |||||||||||||||||||| || |||||||||||||||||||||| ||| |||| | |||| ||||||||||||| |||||||||||||| |
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| T |
2496930 |
gcattgatatttactttgagaatgttggaggcaagacacttgatgctgtactcttgaacatgagagtccacggccgcatacctgcatgtggaatgatctc |
2496831 |
T |
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| Q |
108 |
acag |
111 |
Q |
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|||| |
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| T |
2496830 |
acag |
2496827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 48; E-Value: 6e-19
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 2505611 - 2505508
Alignment:
| Q |
8 |
gcattgacatttactttgagaatgttgggggaaagacacttgatgctgtactctcgaatatgaaactccatggccgcatacctgtgtgtggaatgatctc |
107 |
Q |
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||||||| ||||||||||||| || || || |||||||||||||| ||||||| ||| |||| | | || || |||||||||||||||||||||||||| |
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| T |
2505611 |
gcattgatgtttactttgagaacgtcggtggcaagacacttgatgccgtactcttgaacatgagattacaaggtcgcatacctgtgtgtggaatgatctc |
2505512 |
T |
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| Q |
108 |
acag |
111 |
Q |
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|||| |
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| T |
2505511 |
acag |
2505508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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