View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880R-Insertion-11 (Length: 935)
Name: NF2880R-Insertion-11
Description: NF2880R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880R-Insertion-11 |
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Alignment Details
Target: chr7 (Bit Score: 592; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 9 - 736
Target Start/End: Original strand, 48287606 - 48288333
Alignment:
| Q |
9 |
attgcgcaattcagaaatgaaggttttgtgatcatattggatatctaaattannnnnnngttacttcttttttctgtgttaagagatgaaggaagaataa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
48287606 |
attgcgcaattcagaaatgaaggttttgtgatcatattggatatctaaattatttttttgttacttcttttttctctgttaagagatgaaggaagaataa |
48287705 |
T |
|
| Q |
109 |
aatgaagaaacatgttatttgcttggaaaaagaaaagggtctcatcttcagcagttcaacttgctgctttggttctcccaaatgtgtattgggaatttag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48287706 |
aatgaagaaacatgttatttgcttggaaaaagaaaagggtctcatcttcagcagttcaacttgctgctttggttctcccaaatgtgtattgggaatttag |
48287805 |
T |
|
| Q |
209 |
gatgtacataattcaataggttgtgtacagtatcaaattattatttagtattagatctaatgtgattgttgaaaggatcaatcactcaatccctctagaa |
308 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48287806 |
gatgtacataattcgataggttgtgtacagtatcaaattattatttagtattagatctaatgtgattgttgaaaggatcaatcactcaatccctctagaa |
48287905 |
T |
|
| Q |
309 |
aatgatagtgactttggaagtctcattcttgaggatgtattgttggcttttgtttcctttcaccaatctnnnnnnnnnnnnnnttgagaaaatgttatag |
408 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
48287906 |
aatgatagtgactttggaagtctcattcttgaggatatattgttggcttttgtttcctttcaccaatctaaaaaaataaaaaattgagaaaatgttatag |
48288005 |
T |
|
| Q |
409 |
ttcttcactttgttttaatnnnnnnnnnnncataatgtggtgggtatgcatcttggatttgtcaaggaacaaagatgcccccttatcccctcttattaat |
508 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
48288006 |
ttcttcactttgttttaataaaaaaaaaaacataatgtggtgggtatgcaacttggatttgtcgaggaacaaagatgccccctcatcccctcttattaat |
48288105 |
T |
|
| Q |
509 |
taactatgagagaattgagaaaaggaaataatcgggtagacaattaaacaatgttacctttttaaggtgtatgtatcattctcttctgaaactatggtaa |
608 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48288106 |
taactatgagagaattgagaaaaggaaataatcaggtagacaattaaacaatgttacctttttaaggtgtatgtatcattctcttatgaaactatggtaa |
48288205 |
T |
|
| Q |
609 |
tgggagagtttgaggaccaagactaccttgagaatcaaaaggtgaaatatatattcctatggttagtggctaagagaaggatatgagatcttgacatgtg |
708 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48288206 |
tgggagagcttgaggaccaagactaccttgagaatcaaaaggtgaaatatatatgcctatggttagtggctaagagaaggatatgagatcttgacatgtg |
48288305 |
T |
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| Q |
709 |
atatatcttgacaaatatgttgtatctg |
736 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
48288306 |
atatatcttgacaaatatgttgtatctg |
48288333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 747 - 894
Target Start/End: Original strand, 48288481 - 48288626
Alignment:
| Q |
747 |
ctttctttcttccttgacatggatcaaattcaattcattttatgagtatatatgtgtagtttgtgatatatgtaagttcattctatgagcaatgtccttc |
846 |
Q |
| |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
48288481 |
ctttctttcttccttgacatggatcaaatgcaa---attttatgagtatatatgtgtagtttgtgatatatgtaagttcattttatgagcaatgtccttc |
48288577 |
T |
|
| Q |
847 |
tcttggtcc-aaaagaaaattgacattgtcaattacttcaaattagtct |
894 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48288578 |
tcttggtccaaaaagaaaattgacattgtcaattacttcaaattagtct |
48288626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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