View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2880R-Insertion-12 (Length: 840)

Name: NF2880R-Insertion-12
Description: NF2880R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2880R-Insertion-12
NF2880R-Insertion-12
[»] chr1 (14 HSPs)
chr1 (8-840)||(2403738-2404570)
chr1 (105-537)||(29833076-29833515)
chr1 (105-494)||(734579-734975)
chr1 (105-284)||(2409957-2410136)
chr1 (105-453)||(8933549-8933913)
chr1 (104-301)||(29833852-29834047)
chr1 (359-489)||(2416660-2416791)
chr1 (105-281)||(10909108-10909292)
chr1 (105-281)||(10911352-10911535)
chr1 (105-281)||(13011698-13011881)
chr1 (10-104)||(2789783-2789877)
chr1 (371-438)||(419213-419280)
chr1 (299-358)||(18353733-18353792)
chr1 (649-701)||(14472015-14472067)
[»] chr4 (13 HSPs)
chr4 (107-840)||(45166511-45167254)
chr4 (105-489)||(45161971-45162364)
chr4 (105-453)||(42468439-42468795)
chr4 (105-453)||(42470768-42471124)
chr4 (105-424)||(50855771-50856088)
chr4 (104-354)||(19429075-19429334)
chr4 (104-424)||(8739249-8739563)
chr4 (462-593)||(42468774-42468905)
chr4 (105-281)||(13774151-13774336)
chr4 (108-281)||(13776449-13776630)
chr4 (219-345)||(43179575-43179710)
chr4 (24-73)||(4244715-4244764)
chr4 (486-524)||(13776227-13776265)
[»] chr7 (27 HSPs)
chr7 (105-593)||(3934642-3935138)
chr7 (105-593)||(8414490-8414986)
chr7 (105-489)||(3932507-3932899)
chr7 (105-453)||(8733495-8733850)
chr7 (105-493)||(36464213-36464619)
chr7 (105-488)||(3051993-3052387)
chr7 (201-423)||(19786621-19786843)
chr7 (201-423)||(19788927-19789149)
chr7 (105-453)||(42678571-42678934)
chr7 (415-593)||(42678866-42679044)
chr7 (398-593)||(16497139-16497334)
chr7 (105-281)||(8731176-8731359)
chr7 (104-258)||(18395337-18395498)
chr7 (105-199)||(19789178-19789272)
chr7 (105-202)||(16496953-16497049)
chr7 (107-199)||(19786872-19786964)
chr7 (105-202)||(16535135-16535231)
chr7 (105-202)||(16630431-16630527)
chr7 (107-198)||(21769071-21769161)
chr7 (107-329)||(19093846-19094092)
chr7 (217-281)||(28610360-28610424)
chr7 (371-437)||(16497082-16497148)
chr7 (371-437)||(16535264-16535330)
chr7 (371-437)||(16630332-16630398)
chr7 (105-159)||(42680808-42680862)
chr7 (409-493)||(16535272-16535356)
chr7 (409-493)||(16630306-16630390)
[»] chr5 (14 HSPs)
chr5 (105-494)||(22600699-22601087)
chr5 (105-524)||(11849917-11850344)
chr5 (105-494)||(23164254-23164637)
chr5 (105-494)||(11852175-11852562)
chr5 (153-493)||(37207660-37207999)
chr5 (104-348)||(37215396-37215639)
chr5 (104-453)||(1779221-1779581)
chr5 (254-593)||(1779599-1779959)
chr5 (104-281)||(21743622-21743798)
chr5 (105-179)||(37207996-37208070)
chr5 (105-166)||(15469197-15469258)
chr5 (279-359)||(15469006-15469086)
chr5 (548-710)||(12842507-12842670)
chr5 (386-453)||(37207640-37207707)
[»] chr8 (8 HSPs)
chr8 (105-494)||(36379465-36379864)
chr8 (105-524)||(36377181-36377619)
chr8 (105-493)||(21268120-21268525)
chr8 (105-453)||(4876820-4877176)
chr8 (105-453)||(4879148-4879504)
chr8 (105-453)||(24519153-24519510)
chr8 (462-593)||(4879038-4879169)
chr8 (548-710)||(91360-91523)
[»] chr2 (14 HSPs)
chr2 (105-494)||(31486670-31487069)
chr2 (105-494)||(31488954-31489353)
chr2 (115-451)||(29801805-29802152)
chr2 (113-453)||(34576612-34576969)
chr2 (105-281)||(42277782-42277965)
chr2 (105-437)||(23859825-23860187)
chr2 (417-579)||(34576903-34577065)
chr2 (105-281)||(42275556-42275739)
chr2 (111-246)||(8995076-8995210)
chr2 (105-199)||(5164151-5164244)
chr2 (105-167)||(39816089-39816151)
chr2 (111-185)||(15730020-15730093)
chr2 (758-840)||(29236352-29236433)
chr2 (382-494)||(15729870-15729981)
[»] chr3 (9 HSPs)
chr3 (477-840)||(8535056-8535421)
chr3 (217-489)||(18966231-18966518)
chr3 (105-281)||(4530835-4531020)
chr3 (105-275)||(4533138-4533317)
chr3 (281-356)||(1701104-1701179)
chr3 (649-710)||(5378486-5378547)
chr3 (282-338)||(8535522-8535578)
chr3 (409-489)||(39578235-39578315)
chr3 (486-524)||(4532912-4532950)
[»] scaffold0050 (4 HSPs)
scaffold0050 (105-360)||(29261-29514)
scaffold0050 (104-360)||(31574-31830)
scaffold0050 (406-494)||(29121-29209)
scaffold0050 (406-493)||(31440-31527)
[»] scaffold0599 (1 HSPs)
scaffold0599 (105-318)||(1579-1801)
[»] chr6 (4 HSPs)
chr6 (217-424)||(21199146-21199372)
chr6 (107-251)||(20642217-20642359)
chr6 (548-710)||(16772822-16772985)
chr6 (548-710)||(32707785-32707948)
[»] scaffold0098 (1 HSPs)
scaffold0098 (105-184)||(3707-3785)
[»] scaffold0008 (2 HSPs)
scaffold0008 (105-204)||(88433-88531)
scaffold0008 (405-489)||(73069-73153)
[»] scaffold1361 (1 HSPs)
scaffold1361 (105-199)||(46-140)
[»] scaffold0312 (1 HSPs)
scaffold0312 (371-438)||(11291-11358)
[»] scaffold0045 (2 HSPs)
scaffold0045 (109-166)||(64082-64137)
scaffold0045 (109-166)||(71414-71469)


Alignment Details
Target: chr1 (Bit Score: 821; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 821; E-Value: 0
Query Start/End: Original strand, 8 - 840
Target Start/End: Original strand, 2403738 - 2404570
Alignment:
Q  8 ataaaaagcatgagctttggaccacatttcgctataaactgatcaatgatgctaattgccatgtccaaagaagaacttgaaatgacagcaaactttgtgg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2403738 ataaaaagcatgagctttggaccacatttcgctataaactgatcaatgatgctaattgccatgtccaaagaagaacttgaaatgacagcaaactttgtgg 2403837  T
Q  108 ctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgccaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2403838 ctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgccaa 2403937  T
Q  208 aacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatact 307  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2403938 aacactaagtggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatact 2404037  T
Q  308 ctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccctagtattctagag 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2404038 ctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccctagtattctagag 2404137  T
Q  408 acttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattctccccgggttggaga 507  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2404138 acttctatattattctttagtcttctagagatttccacattattctctagtatcctagagtcttctattttattcttcatcattctccccgggttggaga 2404237  T
Q  508 agactcgtcctcgagtcgaaagtcttcttcatcgccaaagtatggtgaaagatcagcaacattgaaggtagcagagactccatagtcacctggtagctct 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2404238 agactcgtcctcgagtcgaaagtcttcttcatcgccaaagtatggtgaaagatcagcaacattgaaggtagcagagactccatagtcacctggtagctct 2404337  T
Q  608 atttgtaggcattatcattgattttctgcgtaactctaaaaggaccatcagctcttggagataacttggcatttgctttgttaggaaatcgttccttacg 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2404338 atttgtaggcattatcattgattttctgcgtaactctaaaaggaccatcagctcttggagataacttggcatttgctttgtcaggaaatcgttccttacg 2404437  T
Q  708 caagtggatacaaactaagtctccttcattaaatgtgtgcaacttgcgatgcttgtctcgctgagtcttataccttgaattctgtttttcaattcttcca 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2404438 caagtggatacaaactaagtctccttcattaaatgtgtgcaacttgcgatgcttgtctcgctgagtcttataccttgaattctgtttttcaattcttcca 2404537  T
Q  808 cgaacttgttcatgcatcttcttgatttcattg 840  Q
    |||||||||||||||||||||||||||||||||    
T  2404538 cgaacttgttcatgcatcttcttgatttcattg 2404570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 105 - 537
Target Start/End: Original strand, 29833076 - 29833515
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 202  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||||||      
T  29833076 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaatgcttgatgattt 29833174  T
Q  203 ------gccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagag 296  Q
          ||||||||||||  |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  29833175 gaatgtgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagag 29833274  T
Q  297 atatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattcccta 396  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29833275 acatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattcccta 29833374  T
Q  397 gtattctagagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattctccc 496  Q
    |||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||| ||||||||||| || ||||||||||||||||||||    
T  29833375 gtattctagagacttctatattattctttagtgttctagagacttccacattattctctagtattctagagtcttccatattattcttcatcattctccc 29833474  T
Q  497 cgggttggagaagactcgtcctcgagtcgaaagtcttcttc 537  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  29833475 cgggttggagaagactcgtcctcgagtcggaagtcttcttc 29833515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 105 - 494
Target Start/End: Original strand, 734579 - 734975
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatg- 203  Q
    ||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||| |||||  |||||||| ||||||  ||| ||||||||| ||      
T  734579 tggctcagggacaaaaggaaaggtagagaaaatagagaaacact--aatattctcaaggaaaag-ttatattacttgaatcattcaatgcttgattatct 734675  T
Q  204 ---------ccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 294  Q
             |||||||||||  |||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  734676 tgagtatgaccaaaacactaggtggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctag 734775  T
Q  295 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccc 394  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  734776 agatatggatactctagtacataaacctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttgttattccc 734875  T
Q  395 tagtattctagagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattctc 494  Q
    |||||||||||||||||||||||||||||||||||||||| ||| || |||||||||| ||||||| ||||||||||| || ||||||||||||||||||    
T  734876 tagtattctagagacttctatattattctttagtcttctaaagacttccacattattccctagtattctagagtcttccatattattcttcatcattctc 734975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 105 - 284
Target Start/End: Original strand, 2409957 - 2410136
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2409957 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctataatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 2410056  T
Q  205 caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaag 284  Q
    ||||||||||  |||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||    
T  2410057 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaattagcaatatctagaaacaaag 2410136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 105 - 453
Target Start/End: Original strand, 8933549 - 8933913
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||  |||||||| ||||||| ||| |||||||||  |      
T  8933549 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattttcaaagaaaag-ttatattacttgaatgattcaatgcttgattcttg 8933647  T
Q  205 caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaa---------acaaagaaaagtctaga 295  Q
    ||||||||| | |||||| ||||||||||||||||||||||||  ||| ||||||||||||||| |||||||||         ||||||||| | |||||    
T  8933648 caaaacacttagtggtgagccttatttatactactctaggaaggttctacattacaaactagaattatctagaaacattgattacaaagaaaggcctaga 8933747  T
Q  296 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgc------ttatttagt--agtatctagtagcttccttat 387  Q
     | |||||||||||||| |||| | |||||||||||||||||  |||||| || ||||||||      |||||||||  ||| |||| ||||||||||||    
T  8933748 aacatggatactctagttcatatgactagaaggatctagaaacattaagattttcctagtgctttattttatttagtagagtgtctaatagcttccttat 8933847  T
Q  388 tattccctagtattctagagacttctatattattctttagtcttctagagatttacacattattct 453  Q
    |||||| ||||||| |||||||||| ||||| ||||||||| || |||| |||| || ||||||||    
T  8933848 tattccatagtattttagagacttccatatttttctttagttttttagaaatttccatattattct 8933913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 104 - 301
Target Start/End: Complemental strand, 29834047 - 29833852
Alignment:
Q  104 gtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatg 203  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||| | ||| ||||||||| ||     
T  29834047 gtggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaaggattcaatgcttgatcat- 29833950  T
Q  204 ccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatg 301  Q
    |||||||||||  | |||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  29833949 ccaaaacactaggtagtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatg 29833852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 359 - 489
Target Start/End: Original strand, 2416660 - 2416791
Alignment:
Q  359 tatttagtagtatctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttct-agagatttacacattattctctag 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| || ||||||||||||| |    
T  2416660 tatttagtagtatctagtagcttccttattattccctagtattctagagagttctatattattctgtagtcttctgagagacttccacattattctctgg 2416759  T
Q  458 tatcctagagtcttctattttattcttcatca 489  Q
    ||||||||||||||||||||||||||||||||    
T  2416760 tatcctagagtcttctattttattcttcatca 2416791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 105 - 281
Target Start/End: Complemental strand, 10909292 - 10909108
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga-----t 199  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||  |||||||| ||||||| ||| ||||||||     |    
T  10909292 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattcaatgcttgattcttt 10909193  T
Q  200 ga---tgccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 281  Q
    ||   |||| ||||||| | |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  10909192 gaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 10909108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 105 - 281
Target Start/End: Complemental strand, 10911535 - 10911352
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga-----t 199  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||     |    
T  10911535 tggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgattcttt 10911437  T
Q  200 ga---tgccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 281  Q
    ||   |||| ||||||| | |||||| ||||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  10911436 gaatgtgcctaaacacttagtggtgagccttatttatactactctaggaagggtctacattacaaactagaaatatctagaaaca 10911352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 105 - 281
Target Start/End: Complemental strand, 13011881 - 13011698
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga-----t 199  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||| ||| ||||||||     |    
T  13011881 tggctcaggaacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattatttgaatgattcaatgcttgattcttt 13011783  T
Q  200 ga---tgccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 281  Q
    ||   || | ||||||| | |||||| |||||||||||||||||||||||| |||| ||||| |||||| |||||||||||||||    
T  13011782 gaatgtgtctaaacacttagtggtgagccttatttatactactctaggaaggctctacattaaaaactaaaaatatctagaaaca 13011698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 10 - 104
Target Start/End: Complemental strand, 2789877 - 2789783
Alignment:
Q  10 aaaaagcatgagctttggaccacatttcgctataaactgatcaatgatgctaattgccatgtccaaagaagaacttgaaatgacagcaaactttg 104  Q
    ||||||||||  || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2789877 aaaaagcatgtactctggaccacatttcactataaactgatcaatgatgctaattgccatgtccaaagaagaacttgaaatgccagcaaactttg 2789783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 371 - 438
Target Start/End: Original strand, 419213 - 419280
Alignment:
Q  371 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagaga 438  Q
    ||||||||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||    
T  419213 tctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttctagaga 419280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 299 - 358
Target Start/End: Complemental strand, 18353792 - 18353733
Alignment:
Q  299 atggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgct 358  Q
    |||||||||||||| |||| | ||||||||||||||||||| ||||| || |||||||||    
T  18353792 atggatactctagttcatatgactagaaggatctagaaaagataagattttcctagtgct 18353733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 649 - 701
Target Start/End: Original strand, 14472015 - 14472067
Alignment:
Q  649 ggaccatcagctcttggagataacttggcatttgctttgttaggaaatcgttc 701  Q
    ||||||||||||||||| || ||||||||||||| ||  ||||||||||||||    
T  14472015 ggaccatcagctcttggtgacaacttggcatttggttgtttaggaaatcgttc 14472067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 526; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 107 - 840
Target Start/End: Complemental strand, 45167254 - 45166511
Alignment:
Q  107 gctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc-- 204  Q
    ||||| |||||||||||||| ||  |||||||||||||| |||||||||||| ||| ||||  |||||||||||||||| ||| ||| ||||||||||      
T  45167254 gctcatggacaaaaggaaagttaccgaaaatagagaaacactctaatattcttaaaaaaaag-ttatattatttgaatgattcaatgtttgatgatgctt 45167156  T
Q  205 --------caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagag 296  Q
            ||||||||||  |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45167155 gagtatgccaaaacactaggtggtgagccttatttatactattctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagag 45167056  T
Q  297 atatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattcccta 396  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45167055 atatggatactctagtacataaacctagaaggatctagaaaagtaaagacttccctagtgcttatttagtagtgtctagtagcttccttattattcccta 45166956  T
Q  397 gtattctagagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattctccc 496  Q
    |||||||| ||||||||||||||||||||||||||||||||| || || ||||||||  |  || |||||| |||| || ||||||||||||||||||||    
T  45166955 gtattctaaagacttctatattattctttagtcttctagagacttccatattattcttcaccattctagagacttccatattattcttcatcattctccc 45166856  T
Q  497 cgggttggagaagactcgtcctcgagtcgaaagtcttcttcatcgccaaagtatggtgaaagatcagcaacattgaaggtagcagagactccatagtcac 596  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45166855 cgggttggagaagactcgtcctcgagtcgaaagtcttcttcatcgccaaagtatggtgaaagatcagcaacattgaaggtagcagagactccatagtcac 45166756  T
Q  597 ctggtagctcta-tttgtaggcattatcattgattttctgcgtaactctaaaaggaccatcagctcttggagataacttggcatttgctttgttaggaaa 695  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45166755 ctggtagctctattttgtaggcattatcattgattttctgcgtaactctaaaaggaccatcagctcttggagataacttggcatttggtttgttaggaaa 45166656  T
Q  696 tcgttccttacgcaagtggatacaaactaagtctccttcattaaatgtgtgcaacttgcgatgcttgtctcgctgagtcttataccttgaattctgtttt 795  Q
    ||||||||| ||| ||||||| || || ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  45166655 tcgttcctttcgctagtggatccataccaagtctccttccttgaatgtgtgcaacttgcgatgtttgtctcgctgagtcttataccttgaattttgtttt 45166556  T
Q  796 tcaattcttccacgaacttgttcatgcatcttcttgatttcattg 840  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||    
T  45166555 tcaattcttccacgaacctgttcatgcaacttcttgatttcattg 45166511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 105 - 489
Target Start/End: Complemental strand, 45162364 - 45161971
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||| ||||||||||    
T  45162364 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaatgtttgatgatgc 45162266  T
Q  205 ----------caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 294  Q
              ||||||||||  |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45162265 ttgagtatgccaaaacactaggtggtgagccttatttatactattctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 45162166  T
Q  295 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccc 394  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  45162165 agatatggatactctagtacataaacctagaaggatctagaaaagtaaagacttccctagtgcttatttagtagtgtctagtagctttcttattattccc 45162066  T
Q  395 tagtattctagagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatca 489  Q
    |||||||||| ||||||||||||||||||||||||||||||||| || || ||||||||  |  || |||||| |||| || |||||||||||||    
T  45162065 tagtattctaaagacttctatattattctttagtcttctagagacttccatattattcttcaccattctagagacttccatattattcttcatca 45161971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 105 - 453
Target Start/End: Original strand, 42468439 - 42468795
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||||||||    
T  42468439 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatgcttcaatgcttgatgatgc 42468537  T
Q  205 ---------caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctaga 295  Q
             |||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42468538 ttcagtatccaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctaga 42468637  T
Q  296 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccct 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42468638 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattcccc 42468737  T
Q  396 agtattctagagacttctatattattctttagtcttctagagatttacacattattct 453  Q
    |||||||||||| |||| ||||||||||| |   ||||||||| || || ||||||||    
T  42468738 agtattctagagtcttccatattattcttcaccattctagagacttccatattattct 42468795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 105 - 453
Target Start/End: Original strand, 42470768 - 42471124
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||||||||    
T  42470768 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatgcttcaatgcttgatgatgc 42470866  T
Q  205 ---------caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctaga 295  Q
             |||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42470867 ttcagtatccaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctaga 42470966  T
Q  296 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccct 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  42470967 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccca 42471066  T
Q  396 agtattctagagacttctatattattctttagtcttctagagatttacacattattct 453  Q
    |||||||||||| |||| ||||||||||| |   ||||||||| || || ||||||||    
T  42471067 agtattctagagtcttccatattattcttcaccattctagagacttccatattattct 42471124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 105 - 424
Target Start/End: Original strand, 50855771 - 50856088
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||  |||||||| ||||||| ||| |||||||||||| |    
T  50855771 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcgaggaaaag-ttatattacttgaatgattcaatgcttgatgat-c 50855868  T
Q  205 caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggat 304  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  50855869 caaaacactaggtggtgaaccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggat 50855968  T
Q  305 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccctagtattcta 404  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  50855969 actctggtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccatagtattcta 50856068  T
Q  405 gagacttctatattattctt 424  Q
    |||||||| |||||||||||    
T  50856069 gagacttccatattattctt 50856088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 139; E-Value: 3e-72
Query Start/End: Original strand, 104 - 354
Target Start/End: Original strand, 19429075 - 19429334
Alignment:
Q  104 gtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga----- 198  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||| ||| ||||||||         
T  19429075 gtggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagtatatattacttgaatgattcaatgcttgagtatc 19429174  T
Q  199 -tga---tgccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 294  Q
     |||   |  | |||||||   |||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||    
T  19429175 ttgaatatatctaaacacttggtggtgagccttatttatactactctaggtaggctctccattacaaactagaaatatctataaacaaagaaaagtctag 19429274  T
Q  295 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctag 354  Q
    ||||||| ||||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  19429275 agatatgaatactctagtacataaaactagaaggatctagaaaagtcaagacttccctag 19429334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 104 - 424
Target Start/End: Complemental strand, 8739563 - 8739249
Alignment:
Q  104 gtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaa-atattatattatttgaatgtttctatgcttgatgat 202  Q
    |||||||||||| ||||||||||  |||||||||| |||||||||||||| ||||||| |||| |||||||  || ||||||  ||| ||| ||||  |     
T  8739563 gtggctcagggataaaaggaaagaaagagaaaataaagaaactctctaatgttctcaaggaaagatattat--tagttgaattcttcaatgattgagta- 8739467  T
Q  203 gccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatgg 302  Q
         ||||||   |||| | |||| ||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  8739466 -----aacacttggtggtaagccttgtttatacaactctaggaaggctctacattacaaactagaaatatctagaaacaaagaaaaatctagagatatgg 8739372  T
Q  303 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctta--tttagtagtatctagtagcttccttattattccctagtat 400  Q
    || ||||||| |||| | |||||||||||||||||  |||||| ||||||||||| ||  |||||| || | ||||||||||||||||||||  ||||||    
T  8739371 atgctctagttcatatgactagaaggatctagaaacattaagatttccctagtgcataattttagt-gtgtatagtagcttccttattattcattagtat 8739273  T
Q  401 tctagagacttctatattattctt 424  Q
    ||||||||| || | |||||||||    
T  8739272 tctagagacatccacattattctt 8739249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 462 - 593
Target Start/End: Original strand, 42468774 - 42468905
Alignment:
Q  462 ctagagtcttctattttattcttcatcattctccccgggttggagaagactcgtcctcgagtcgaaagtcttcttcatcgccaaagtatggtgaaagatc 561  Q
    |||||| |||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42468774 ctagagacttccatattattcttcatcattctccccgggttggagaagactcgttctcgagtcgaaagtcttcttcatcgccaaagtatggtgaaagatc 42468873  T
Q  562 agcaacattgaaggtagcagagactccatagt 593  Q
    |||||||||||| ||||||||||| |||||||    
T  42468874 agcaacattgaaagtagcagagacaccatagt 42468905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 105 - 281
Target Start/End: Complemental strand, 13774336 - 13774151
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatg---- 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||||        
T  13774336 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgatgatgc 13774238  T
Q  201 ------atgccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 281  Q
          ||||||||||||||  |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  13774237 ttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 13774151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 108 - 281
Target Start/End: Complemental strand, 13776630 - 13776449
Alignment:
Q  108 ctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga-----tga- 201  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||  |||||||| ||||||| ||| ||||||||     |||     
T  13776630 ctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattcaatgcttgattctttgaa 13776531  T
Q  202 --tgccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 281  Q
      |||| ||||||| |  ||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  13776530 tgtgcctaaacacttagcggtgagccttatttatactactctaggaaggctctgcattacaaactagaaatatctagaaaca 13776449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 219 - 345
Target Start/End: Complemental strand, 43179710 - 43179575
Alignment:
Q  219 gtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca---------aagaaaagtctagagatatggatactct 309  Q
    |||| ||| |||||||||||||||| || ||||| |||||||||||||||||||||| |||||         ||||||||| |||||| |||||||||||    
T  43179710 gtgagcctaatttatactactctagaaaaactctgcattacaaactagaaatatctacaaacattgattacaaagaaaagtatagagacatggatactct 43179611  T
Q  310 agtacataagcctagaaggatctagaaaagttaaga 345  Q
    ||| |||| | ||||||||||| | |||||||||||    
T  43179610 agttcatatgactagaaggatccaaaaaagttaaga 43179575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 4244764 - 4244715
Alignment:
Q  24 ttggaccacatttcgctataaactgatcaatgatgctaattgccatgtcc 73  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  4244764 ttggaccacattttgctatgaactgatcaatgatgctaattgccatgtcc 4244715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 486 - 524
Target Start/End: Complemental strand, 13776265 - 13776227
Alignment:
Q  486 atcattctccccgggttggagaagactcgtcctcgagtc 524  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  13776265 atcattctccccgggttggaagagactcgtcctcgagtc 13776227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 105 - 593
Target Start/End: Complemental strand, 3935138 - 3934642
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||| ||||    
T  3935138 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaatgcttgattatgc 3935040  T
Q  205 ---------caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctaga 295  Q
             |||||||||| ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3935039 ttgagtatccaaaacactagatggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctaga 3934940  T
Q  296 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccct 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3934939 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccct 3934840  T
Q  396 agtattctagagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattctcc 495  Q
    |||||||||||| |||| ||||||||||||||||||||||||| || || ||||||||  |  || |||||| |||| || |||||||||||||||||||    
T  3934839 agtattctagagtcttccatattattctttagtcttctagagacttccatattattcttcatcattctagagacttccatattattcttcatcattctcc 3934740  T
Q  496 ccgggttggagaagactcgtcctcgagtcgaaagtcttcttcatcgccaaagtatggtgaaagatcagcaacattgaaggtagcagagactccatagt 593  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  3934739 ccgggttggataagactcgtcctcgagtcgaaagtcttcttcatcgccaaagtatggtgaaagatcagcaacattgaaagtagcagagacaccatagt 3934642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 105 - 593
Target Start/End: Original strand, 8414490 - 8414986
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttc----------tatgc 194  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||||||||||||| |||          |||||    
T  8414490 tggctcagggacaaaaggaaaggtagagaaaatagaaaaacactctaatattctcaaagaaaag-ttatattatttgaatgattcaatgcttgaatatgc 8414588  T
Q  195 ttgatgatgccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 294  Q
    ||||  ||||||||||||||  |||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  8414589 ttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaaaatctagaaacaaagaaaagtctag 8414688  T
Q  295 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccc 394  Q
    ||||||||||| | ||||| ||||  ||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  8414689 agatatggatattttagtatataaaactagaag-atctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagtttccttattattccc 8414787  T
Q  395 tagtattctagagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattctc 494  Q
    |||||||||||||||||||||||||||||||||| ||||||| | || |||||||||||||||||| ||||||||||| || ||||||||||||||||||    
T  8414788 tagtattctagagacttctatattattctttagtgttctagatacttccacattattctctagtattctagagtcttccatattattcttcatcattctc 8414887  T
Q  495 cccgggttggagaagactcgtcctcgagtcgaaagtcttcttcatcgccaaagtatggtgaaagatcagcaacattgaaggtagcagagactccatagt 593  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  8414888 cccgggttggagaagactcgtcctcgagtcgaaagtcttcttcatcaccaaagtatggtgaaatatcagcaacattgaaggtagcatagactccatagt 8414986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 262; E-Value: 1e-145
Query Start/End: Original strand, 105 - 489
Target Start/End: Complemental strand, 3932899 - 3932507
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||| ||||    
T  3932899 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaatgcttgattatgc 3932801  T
Q  205 ---------caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctaga 295  Q
             |||||||||| ||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3932800 ttgagtatccaaaacactagatggtgagccttatttatactattctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctaga 3932701  T
Q  296 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccct 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3932700 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccct 3932601  T
Q  396 agtattctagagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatca 489  Q
    |||||||||||| |||| ||||||||||||||||||||||||| || || ||||||||  |  || |||||| |||| || |||||||||||||    
T  3932600 agtattctagagtcttccatattattctttagtcttctagagacttccatattattcttcatcattctagagacttccatattattcttcatca 3932507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 105 - 453
Target Start/End: Original strand, 8733495 - 8733850
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 202  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||      
T  8733495 tggctcagggacaaaagagaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaatgcttgatgattc 8733594  T
Q  203 --------gccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 294  Q
            ||||||||||||  |||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||    
T  8733595 ttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctcctttacaaactagaaatatctagaaacaaagaaaagtctag 8733694  T
Q  295 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccc 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||| ||||||||||||||||||||||||    
T  8733695 agatatggatactctagtacataagcctagaaggatctagaaaagttaaga---ccctagtgcttatttagtagtgtctagtagcttccttattattccc 8733791  T
Q  395 tagtattctagagacttctatattattctttagtcttctagagatttacacattattct 453  Q
    |||||||||||||||||||||||||||||||||| ||||||||| || || ||||||||    
T  8733792 tagtattctagagacttctatattattctttagtgttctagagacttccatattattct 8733850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 105 - 493
Target Start/End: Original strand, 36464213 - 36464619
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga------ 198  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||          
T  36464213 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaatgcttgactatgc 36464311  T
Q  199 ----------tga---tgccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaaga 285  Q
              |||   |||||||||||||  |||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  36464312 ttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaaga 36464411  T
Q  286 aaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttcctt 385  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  36464412 aaagtctggagatatggatactctagtacataaaactagaaggatctagaaaagtcaagacttccctagtgcttatttagtagtgtctagtagcttcctt 36464511  T
Q  386 attattccctagtattctagagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttc 485  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||| || |||||||||||||||||| ||||||||||| || ||||| |||    
T  36464512 attattccctagtattctagagacttctatattattatttagtgttctagagacttccacattattctctagtattctagagtcttccatattatttttc 36464611  T
Q  486 atcattct 493  Q
    ||||||||    
T  36464612 atcattct 36464619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 105 - 488
Target Start/End: Complemental strand, 3052387 - 3051993
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    ||||| |||||||||||||| ||||||||||||| ||||||||| |  |||||||||||||| | |||||||||||||||| ||| ||||||||  || |    
T  3052387 tggctgagggacaaaaggaatggtagagaaaataaagaaactctat--tattctcaaagaaagt-ttatattatttgaatgcttcaatgcttgagtatac 3052291  T
Q  205 ----------caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 294  Q
              ||||||||||  |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3052290 ttgagtatatcaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctag 3052191  T
Q  295 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattcc- 393  Q
    ||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||       
T  3052190 agatatggatattctagtacataaaactagaaggatctagaaaagttaagacttccctaatgcttatttagtagtgtctagtagcttccttattatttat 3052091  T
Q  394 ---ctagtattctagagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatc 488  Q
       ||||||||||||||||||||||||||||||||||| || |||||| ||  ||||||||||||||||| ||||||||||| || ||||||||||||    
T  3052090 tatctagtattctagagacttctatattattctttagtgttatagagacttcgacattattctctagtattctagagtcttccatattattcttcatc 3051993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 201 - 423
Target Start/End: Complemental strand, 19786843 - 19786621
Alignment:
Q  201 atgccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatat 300  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19786843 atgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatat 19786744  T
Q  301 ggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccctagtat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  19786743 ggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctaatat 19786644  T
Q  401 tctagagacttctatattattct 423  Q
    |||||||||||| | ||||||||    
T  19786643 tctagagacttccacattattct 19786621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 201 - 423
Target Start/End: Complemental strand, 19789149 - 19788927
Alignment:
Q  201 atgccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatat 300  Q
    ||||||||||||||  |||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19789149 atgccaaaacactaggtggtgagccttatttatactactctagtaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctagagatat 19789050  T
Q  301 ggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccctagtat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19789049 ggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtat 19788950  T
Q  401 tctagagacttctatattattct 423  Q
    |||||||||||| | ||||||||    
T  19788949 tctagagacttccacattattct 19788927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 105 - 453
Target Start/End: Original strand, 42678571 - 42678934
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||  |||||||| ||||||| ||| |||||||||  |      
T  42678571 tggctcagggacaaaaggaaaggtagagaaaataaagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgatcct-t 42678668  T
Q  205 caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaa---------acaaagaaaagtctaga 295  Q
    |||||||||   |||||| |||||||||||||||  | |||||  ||| ||||||||||||||| |||||||||         ||||||||| | |||||    
T  42678669 caaaacacttggtggtgagccttatttatactaccttgggaaggttctacattacaaactagaattatctagaaacattgattacaaagaaaggcctaga 42678768  T
Q  296 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgc------ttatttagt--agtatctagtagcttccttat 387  Q
     | |||||||||||||  |||| | |||||||||||||||||  |||||| || ||||||||      |||||||||  ||| |||||||||||||||||    
T  42678769 aacatggatactctaggtcatatgactagaaggatctagaaacattaagattttcctagtgctttattttatttagtagagtgtctagtagcttccttat 42678868  T
Q  388 tattccctagtattctagagacttctatattattctttagtcttctagagatttacacattattct 453  Q
    |||||| ||||||| |||||||||| ||||||||||||||| ||||||| | || || ||||||||    
T  42678869 tattccatagtattttagagacttccatattattctttagttttctagaaacttccatattattct 42678934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 415 - 593
Target Start/End: Original strand, 42678866 - 42679044
Alignment:
Q  415 tattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattctccccgggttggagaagactcg 514  Q
    ||||||||  |||| || |||||| || || |||||||| |||| | |||||  |||| || |||||||||||||||||||||| |||||||||||||||    
T  42678866 tattattccatagtattttagagacttccatattattctttagttttctagaaacttccatattattcttcatcattctccccgagttggagaagactcg 42678965  T
Q  515 tcctcgagtcgaaagtcttcttcatcgccaaagtatggtgaaagatcagcaacattgaaggtagcagagactccatagt 593  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  42678966 tcctcgagtcgaaagtcttcttcatcgccaaagtatggtgaaagatcagcaacattgaaagtagcagagactccatagt 42679044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 398 - 593
Target Start/End: Original strand, 16497139 - 16497334
Alignment:
Q  398 tattctagagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattctcccc 497  Q
    |||||||||| | || ||||||||||| |   ||||||||| || || ||||||||  |  || |||||| |||| || |||||||| ||||||||||||    
T  16497139 tattctagaggcatccatattattcttgatcattctagagacttccatattattcttgatcattctagagacttccatattattcttgatcattctcccc 16497238  T
Q  498 gggttggagaagactcgtcctcgagtcgaaagtcttcttcatcgccaaagtatggtgaaagatcagcaacattgaaggtagcagagactccatagt 593  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||    
T  16497239 gggttggaaaagactcgtcctcgagtcaaaagtcttcttcatcgccaaagtatggtgaaagatcagcaacattgaaagtataagagactccatagt 16497334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 105 - 281
Target Start/End: Original strand, 8731176 - 8731359
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgat----- 199  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| |||||||||         
T  8731176 tggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgattcttt 8731274  T
Q  200 ---gatgccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 281  Q
         |||| ||||||| | |||||| |||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||||    
T  8731275 aaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaattagaaatatctagaaaca 8731359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 104 - 258
Target Start/End: Complemental strand, 18395498 - 18395337
Alignment:
Q  104 gtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga----- 198  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||         
T  18395498 gtggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgactctt 18395400  T
Q  199 tga---tgccaaaacactaaatggtgaaccttatttatactactctaggaagactctccatta 258  Q
    | |   || | ||||||| | |||||| |||||||||||||||||||||||| |||| |||||    
T  18395399 ttaatgtgtctaaacacttagtggtgagccttatttatactactctaggaaggctctacatta 18395337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 19789272 - 19789178
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgat 199  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| ||||||  ||| |||||||||    
T  19789272 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgat 19789178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 16496953 - 16497049
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat 202  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||  |||||||| || |||| ||| ||||||||||||    
T  16496953 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttaaatgattcaatgcttgatgat 16497049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 107 - 199
Target Start/End: Complemental strand, 19786964 - 19786872
Alignment:
Q  107 gctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgat 199  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| ||||||  ||| |||||||||    
T  19786964 gctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgat 19786872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 16535135 - 16535231
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat 202  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||  |||||||| || |||| ||| ||||||||||||    
T  16535135 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttaaatgattcaatgcttgatgat 16535231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 105 - 202
Target Start/End: Complemental strand, 16630527 - 16630431
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat 202  Q
    |||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||  |||||||| || |||| ||| ||||||||||||    
T  16630527 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttaaatgattcaatgcttgatgat 16630431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 21769071 - 21769161
Alignment:
Q  107 gctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga 198  Q
    |||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||| | |  ||||||||||||||||| ||||||||    
T  21769071 gctcagggatgaaaggaaaggtagagaaaatagagaaactctttaatattctcaaagaaagt-tgttattatttgaatgtttcaatgcttga 21769161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 107 - 329
Target Start/End: Original strand, 19093846 - 19094092
Alignment:
Q  107 gctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaa----ata-ttatattatttgaatg--------tttctatg 193  Q
    |||||||| |||||||| ||||||||||||||||  ||||||||||||||||||||||||    ||| ||||||||||||||||        |||  ||     
T  19093846 gctcagggtcaaaaggagaggtagagaaaataga--aactctctaatattctcaaagaaagtttatatttatattatttgaatgtttgaatttttgaata 19093943  T
Q  194 cttgatgatgccaaaacactaaatggtgaaccttatttatactactctaggaag----actctccattacaaactagaaatatctagaa---------ac 280  Q
    |||||  |||||  ||||||   ||| ||||||||||||||||||||||| |||    ||||| |||||||||||||||||||||| ||         ||    
T  19093944 cttgagtatgcctgaacacttggtggcgaaccttatttatactactctagaaagacgtactctacattacaaactagaaatatctaaaaatatcgattac 19094043  T
Q  281 aaagaaaagtctagagatatggatactctagtacataagcctagaagga 329  Q
    ||||||||||||||||| ||||||||||||||  ||||| |||||||||    
T  19094044 aaagaaaagtctagagacatggatactctagtttataagtctagaagga 19094092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 28610360 - 28610424
Alignment:
Q  217 tggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 281  Q
    |||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  28610360 tggtgagccttatttatactactctagaaaggctctacattacaaactagaaatatctagaaaca 28610424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 371 - 437
Target Start/End: Original strand, 16497082 - 16497148
Alignment:
Q  371 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagag 437  Q
    ||||||||||||||||||||||| |||||||||||| ||||| | ||||||||||| | ||||||||    
T  16497082 tctagtagcttccttattattccatagtattctagaaacttccacattattctttattattctagag 16497148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 371 - 437
Target Start/End: Original strand, 16535264 - 16535330
Alignment:
Q  371 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagag 437  Q
    |||||||||||| |||||||||| |||||||||||||||||| | ||||||||||| | ||||||||    
T  16535264 tctagtagcttctttattattccatagtattctagagacttccacattattctttattattctagag 16535330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 371 - 437
Target Start/End: Complemental strand, 16630398 - 16630332
Alignment:
Q  371 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagag 437  Q
    |||||||||||| |||||||||| |||||||||||||||||| | ||||||||||| | ||||||||    
T  16630398 tctagtagcttctttattattccatagtattctagagacttccacattattctttattattctagag 16630332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 42680862 - 42680808
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctc 159  Q
    ||||| ||| |||||| |||||||||||||||||||||||| |||||||||||||    
T  42680862 tggctgaggaacaaaatgaaaggtagagaaaatagagaaacactctaatattctc 42680808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 493
Target Start/End: Original strand, 16535272 - 16535356
Alignment:
Q  409 cttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattct 493  Q
    ||||| ||||||||  |||| ||||||||| || ||||||||||| || ||| |||||| |||| || |||||||| ||||||||    
T  16535272 cttctttattattccatagtattctagagacttccacattattctttattattctagaggcttccatattattcttgatcattct 16535356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 493
Target Start/End: Complemental strand, 16630390 - 16630306
Alignment:
Q  409 cttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattct 493  Q
    ||||| ||||||||  |||| ||||||||| || ||||||||||| || ||| |||||| |||| || |||||||| ||||||||    
T  16630390 cttctttattattccatagtattctagagacttccacattattctttattattctagaggcttccatattattcttgatcattct 16630306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 105 - 494
Target Start/End: Complemental strand, 22601087 - 22600699
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||| |    
T  22601087 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaatgcttgatgat-c 22600989  T
Q  205 caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggat 304  Q
    ||||||||||  |||||| |||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  22600988 caaaacactaggtggtgagccttatttatactactttagcaagactctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggat 22600889  T
Q  305 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccctagtattcta 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||    
T  22600888 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtcaagtagctttcttattattccatagtattcta 22600789  T
Q  405 gagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattctc 494  Q
    ||||||||||||||||| |||||||||||||||| || |||||||||| ||| ||| ||||||||||| || ||||||||||||||||||    
T  22600788 gagacttctatattattatttagtcttctagagacttccacattattccctaatattctagagtcttccatattattcttcatcattctc 22600699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 105 - 524
Target Start/End: Original strand, 11849917 - 11850344
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||| ||| |||||||||||| |    
T  11849917 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattatttgaatgattcaatgcttgatgat-c 11850014  T
Q  205 caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggat 304  Q
    ||||||||||  |||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11850015 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggat 11850114  T
Q  305 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccctagtattcta 404  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||    
T  11850115 actcttgtacataagcctagaaggatctagaaaatttaagacttccctagtgcttatttagtagtgtctagtagctttcttattattccctagtatttta 11850214  T
Q  405 gagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttc----------atcattctc 494  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||  |||||| | ||||||||| || |||||||||          |||||||||    
T  11850215 gagacttctatattattctttagtcttctagagacttccacattattccatagtattcaagagtcttccatattattcttcaccattctctatcattctc 11850314  T
Q  495 cccgggttggagaagactcgtcctcgagtc 524  Q
    |||||||||||  |||||||||||||||||    
T  11850315 cccgggttggaagagactcgtcctcgagtc 11850344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 105 - 494
Target Start/End: Original strand, 23164254 - 23164637
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||    || |    
T  23164254 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaatgctt----at-c 23164347  T
Q  205 caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggat 304  Q
    ||||||||||  |||||  |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23164348 caaaacactaggtggtgggccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaagaaaagtctagagatatggat 23164447  T
Q  305 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccctagtattcta 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  23164448 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgtttatttagtagtgtctagtagcttccttattattccctagtattcta 23164547  T
Q  405 gagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattctc 494  Q
    |||||||||||||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||| || |||||||||| |||||||    
T  23164548 gagacttctatattattctttagtcttctagagacttccacattattccctagtattctagagtcttccatattattcttcaccattctc 23164637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 105 - 494
Target Start/End: Original strand, 11852175 - 11852562
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| |||||||| ||| |    
T  11852175 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaatgcttgacgat-c 11852272  T
Q  205 caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggat 304  Q
    ||||||||||  |||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  11852273 caaaacactaggtggtgagccttatttatactactctaggaaggctctccattaccaactagaaatatctagaaacaaataaaagtctagagatatggat 11852372  T
Q  305 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccctagtattcta 404  Q
    ||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11852373 actctagtacataagcctagaaggtcctagaaaagttatgacttccctagtgcttatttagtagtgtctagtagcttccttattattccctagtattcta 11852472  T
Q  405 gagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattctc 494  Q
    |||||||||||||||||||||||||||||||||| || | |||||||   |||||| ||||||||||| || |||||||||| |||||||    
T  11852473 gagacttctatattattctttagtcttctagagacttcctcattatttcatagtattctagagtcttccatattattcttcaccattctc 11852562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 153 - 493
Target Start/End: Complemental strand, 37207999 - 37207660
Alignment:
Q  153 tattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgccaaaacactaaatggtgaaccttatttatactactctaggaagactct 252  Q
    ||||||||||||||| ||||||||||||||||| ||| |||||||||||||| |||||||||  |||||| |||||||||||||||||||||||| ||||    
T  37207999 tattctcaaagaaaagattatattatttgaatgcttcaatgcttgatgatgc-aaaacactaggtggtgagccttatttatactactctaggaaggctct 37207901  T
Q  253 ccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccct 352  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37207900 ccattaccaactagaaatatctagaaacaaagaaaagtctagagacatggatactctagtacataagcctagaaggatctagaaaagttaagacttccct 37207801  T
Q  353 agtgcttatttagtagtatctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagagatttacacattattc 452  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||    
T  37207800 agtgcttatttagtagtgtctagtagcttccttattattccctagtattctacagacttctatattattctttagtcttctagagacttccacattattc 37207701  T
Q  453 tctagtatcctagagtcttctattttattcttcatcattct 493  Q
     ||||||| ||||||||||| || |||||||||||||||||    
T  37207700 cctagtattctagagtcttccatattattcttcatcattct 37207660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 104 - 348
Target Start/End: Complemental strand, 37215639 - 37215396
Alignment:
Q  104 gtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatg 203  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||    
T  37215639 gtggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaatgcttgatgatg 37215540  T
Q  204 ccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatgga 303  Q
    | |||||||||  |||||| |||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||| |||||| |||||    
T  37215539 c-aaaacactatgtggtgagccttatttatactactctaggaaggctcttcattaccaactagaaatatctagaaacaaagaaaagtttagagacatgga 37215441  T
Q  304 tactctagtacataagcctagaaggatctagaaaagttaagactt 348  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  37215440 tactctagtatataagcctagaaggatctagaaaagttaagactt 37215396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 117; E-Value: 4e-59
Query Start/End: Original strand, 104 - 453
Target Start/End: Original strand, 1779221 - 1779581
Alignment:
Q  104 gtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatg 203  Q
    ||||||||||||||||||||||     ||||||||||| ||| |||||||||||||||||||||  |||||||| ||||||| ||| || ||||||  |     
T  1779221 gtggctcagggacaaaaggaaa-----agaaaatagaggaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaatacttgattttt 1779314  T
Q  204 ccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaa---------acaaagaaaagtctag 294  Q
     |||||||||   |||||| |||||||||||| ||||||||||| |||| ||||||||||||||| |||||||||         ||||||||| | ||||    
T  1779315 acaaaacacttgttggtgagccttatttataccactctaggaaggctctacattacaaactagaattatctagaaacattgattacaaagaaaggcctag 1779414  T
Q  295 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgc------ttatttagt--agtatctagtagcttcctta 386  Q
    | | |||||||||||||| |||| | |||||||||||||||||  |||||| ||  |||||||      |||||||||  ||| ||||||||||||||||    
T  1779415 aaacatggatactctagttcatatgactagaaggatctagaaacattaagatttttctagtgctttattttatttagtggagtgtctagtagcttcctta 1779514  T
Q  387 ttattccctagtattctagagacttctatattattctttagtcttctagagatttacacattattct 453  Q
    ||||||| ||||||| |||||||||||||||||||||||||| ||||||| | || || ||||||||    
T  1779515 ttattccatagtattttagagacttctatattattctttagttttctagaaacttccatattattct 1779581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 254 - 593
Target Start/End: Original strand, 1779599 - 1779959
Alignment:
Q  254 cattacaaactagaaatatctagaaaca---------aagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaag 344  Q
    ||||||||||||||||||||||||||||         | |||| | ||||||||| ||||| |||||| |||| | |||||||||||||||||  |||||    
T  1779599 cattacaaactagaaatatctagaaacattgattacaaggaaaggcctagagatagggatattctagttcatatgactagaaggatctagaaacattaag 1779698  T
Q  345 acttccctagtgctt-attt-----agtagtat--ctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctaga 436  Q
    | |||||||| |||| ||||     ||||| ||  |||||||||||   |||||||  |||||||||||||||||| ||||||||||||||| || | ||    
T  1779699 atttccctagcgctttattttatccagtagaatgtctagtagcttcgacattattctttagtattctagagacttccatattattctttagtgttatgga 1779798  T
Q  437 gatttacacattattctctagtatcctagagtcttctattttattcttcatcattctccccgggttggagaagactcgtcctcgagtcgaaagtcttctt 536  Q
    || || |||||| |||| |||||| |||  | |||| || ||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||    
T  1779799 gacttccacatttttctttagtattctaaggacttccatattattcttcatcattctccccaggttggagaagactcatcctcaagtcgaaagtcttctt 1779898  T
Q  537 catcgccaaagtatggtgaaagatcagcaacattgaagg----tagcagagactccatagt 593  Q
    |||| | | ||||||| |||| |||||||||||| ||||    ||||||||||||||||||    
T  1779899 catcactagagtatggggaaaaatcagcaacattaaaggtacatagcagagactccatagt 1779959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 104 - 281
Target Start/End: Complemental strand, 21743798 - 21743622
Alignment:
Q  104 gtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatg 203  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||  ||| ||||||||  |||    
T  21743798 gtggcccagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaagt-ttatattatttgaattcttcaatgcttgagtatg 21743700  T
Q  204 ccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 281  Q
    || || ||||   ||||||| ||||||||||||||||||||||| |||| || ||||||||| ||||||||| |||||    
T  21743699 cctaaccacttggtggtgaatcttatttatactactctaggaaggctctacactacaaactaaaaatatctaaaaaca 21743622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 105 - 179
Target Start/End: Complemental strand, 37208070 - 37207996
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatt 179  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  37208070 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcgaagaaaagattatattatt 37207996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 15469258 - 15469197
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaa 166  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  15469258 tggctcagggacaaaaggaaaggtaaaaaaaatagagaaactctctaatattctcaaagaaa 15469197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 279 - 359
Target Start/End: Complemental strand, 15469086 - 15469006
Alignment:
Q  279 acaaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctt 359  Q
    |||| ||||||| ||||||||| ||||| ||| | |||| | ||||| ||||||||||||||||| | || ||||||||||    
T  15469086 acaaggaaaagtttagagatatagatacactaattcatatgactagatggatctagaaaagttaatattttcctagtgctt 15469006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 710
Target Start/End: Complemental strand, 12842670 - 12842507
Alignment:
Q  548 tatggtgaaagatcagcaacattgaaggtagcagagactccatagtcacctggtagctctat-ttgtaggcattatcattgattttctgcgtaactctaa 646  Q
    |||||||||||||| |||||||||||||| || ||||| ||||||   ||||| |  ||||  ||||| ||||| || |||||||| ||    | | | |    
T  12842670 tatggtgaaagatcggcaacattgaaggttgctgagacaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactattttga 12842571  T
Q  647 aaggaccatcagctcttggagataacttggcatttgctttgttaggaaatcgttccttacgcaa 710  Q
    | ||||||||||||||||| || ||||||||||||| ||  || ||||||||||| || |||||    
T  12842570 agggaccatcagctcttggtgacaacttggcatttggttgtttgggaaatcgttctttgcgcaa 12842507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 453
Target Start/End: Complemental strand, 37207707 - 37207640
Alignment:
Q  386 attattccctagtattctagagacttctatattattctttagtcttctagagatttacacattattct 453  Q
    |||||||||||||||||||||| |||| ||||||||||| |   ||||||||| || || ||||||||    
T  37207707 attattccctagtattctagagtcttccatattattcttcatcattctagagacttccatattattct 37207640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 105 - 494
Target Start/End: Original strand, 36379465 - 36379864
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 202  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| ||||||  ||| ||||||||| ||      
T  36379465 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatct 36379564  T
Q  203 -------gccaaaacactaaa-tggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 294  Q
           ||||||||||  |  |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||    
T  36379565 tgagtatgccaaaacacccaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctggaaacaaagaaaagtccag 36379664  T
Q  295 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccc 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36379665 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccc 36379764  T
Q  395 tagtattctagagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattctc 494  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||| || |||||||||| |||||||    
T  36379765 tagtattctagagacttctatattattctttagtcttctagagacttccacattattccctagtattctagagtcttccatattattcttcaccattctc 36379864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 105 - 524
Target Start/End: Original strand, 36377181 - 36377619
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 202  Q
    ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| ||||||  ||| ||||||||| ||      
T  36377181 tggctcaaggacaaa-ggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattattt 36377279  T
Q  203 -------gccaaaacactaaa-tggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 294  Q
           ||||||||||| |  |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||  ||||||||||||||  ||    
T  36377280 tgagtatgccaaaacacttaggtggtgagccttatttatactactctaggaaggctctccattacaaagtagaaatatctgaaaacaaagaaaagttcag 36377379  T
Q  295 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccc 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36377380 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccc 36377479  T
Q  395 tagtattctagagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttc--------- 485  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||  |||||| ||||||||||| || |||||||||             
T  36377480 tagtattctagagacttctatattattctttagtcttctagagacttccacattattccttagtattctagagtcttccatattattcttcaccattctc 36377579  T
Q  486 -atcattctccccgggttggagaagactcgtcctcgagtc 524  Q
     ||||||||||||||||||||  |||||||||||||||||    
T  36377580 tatcattctccccgggttggaagagactcgtcctcgagtc 36377619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 105 - 493
Target Start/End: Original strand, 21268120 - 21268525
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 202  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| ||||||  ||| ||||||||| ||      
T  21268120 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatct 21268219  T
Q  203 ----------------gccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaa 286  Q
                    ||| ||||||||  | |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21268220 tgagtatttggattatgcctaaacactaggtagtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaa 21268319  T
Q  287 aagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttcctta 386  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||||||||||| ||||||||||||||  |||||||||||| ||||||||||||||||    
T  21268320 aagtctagagatatggatactttagtacataaaactagaaggatctagaaaagtcaagacttccctagt-tttatttagtagtgtctagtagcttcctta 21268418  T
Q  387 ttattccctagtattctagagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttca 486  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||| ||||||||||| || ||||||||||    
T  21268419 ttattccctagtattctagagacttctatattattctttagtgttctagagacttccacattattctctagtattctagagtcttccatattattcttca 21268518  T
Q  487 tcattct 493  Q
     ||||||    
T  21268519 ccattct 21268525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 105 - 453
Target Start/End: Complemental strand, 4877176 - 4876820
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 202  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||  |||||||| ||||||  ||| ||||||||| ||      
T  4877176 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaag-ttatattacttgaatcattcaatgcttgattatct 4877078  T
Q  203 -------gccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctaga 295  Q
           | |||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4877077 tgagtatgtcaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctaga 4876978  T
Q  296 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccct 395  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  4876977 gatatggatactatagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtttctagtagcttccttattattcccc 4876878  T
Q  396 agtattctagagacttctatattattctttagtcttctagagatttacacattattct 453  Q
    |||||||||||| |||| ||||||||||| |   ||||||||| || || ||||||||    
T  4876877 agtattctagagtcttccatattattcttcaccattctagagacttccatattattct 4876820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 105 - 453
Target Start/End: Complemental strand, 4879504 - 4879148
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 202  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||  |||||||| ||||||  ||| ||||||||| ||      
T  4879504 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaag-ttatattacttgaatcattcaatgcttgattatct 4879406  T
Q  203 -------gccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctaga 295  Q
           | |||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4879405 tgagtatgtcaaaacactagatggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctaga 4879306  T
Q  296 gatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccct 395  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  4879305 gatatggatactatagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtttctagtagcttccttattattcccc 4879206  T
Q  396 agtattctagagacttctatattattctttagtcttctagagatttacacattattct 453  Q
    |||||||||||| |||| ||||||||||| |   ||||||||| || || ||||||||    
T  4879205 agtattctagagtcttccatattattcttcaccattctagagacttccatattattct 4879148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 105 - 453
Target Start/End: Original strand, 24519153 - 24519510
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||  |||||||| ||||||| ||| ||||||||| ||||    
T  24519153 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaag-ttatattacttgaatgattcaatgcttgattatgc 24519251  T
Q  205 ----------caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 294  Q
              |||||||||| ||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  24519252 ttcagtatgccaaaacactagatggtgagccttatttatactactctaggaaggctctccattataaactagaaatatctagaaacaaagaaaagtctag 24519351  T
Q  295 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccc 394  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24519352 agatatggatacttttgtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctggtagcttccttattattccc 24519451  T
Q  395 tagtattctagagacttctatattattctttagtcttctagagatttacacattattct 453  Q
     |||||||||||| |||| ||||||||||| |   ||||||||| || || ||||||||    
T  24519452 cagtattctagagtcttccatattattcttcaccattctagagacttccatattattct 24519510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 462 - 593
Target Start/End: Complemental strand, 4879169 - 4879038
Alignment:
Q  462 ctagagtcttctattttattcttcatcattctccccgggttggagaagactcgtcctcgagtcgaaagtcttcttcatcgccaaagtatggtgaaagatc 561  Q
    |||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4879169 ctagagacttccatattattcttcatcattctccccgggttggagaagactcgtcctcgagtcgaaagtcttcttcatcgccaaagtatggtgaaagatc 4879070  T
Q  562 agcaacattgaaggtagcagagactccatagt 593  Q
    |||||||||||| ||||||||||| |||||||    
T  4879069 agcaacattgaaagtagcagagacaccatagt 4879038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 710
Target Start/End: Complemental strand, 91523 - 91360
Alignment:
Q  548 tatggtgaaagatcagcaacattgaaggtagcagagactccatagtcacctggtagctctat-ttgtaggcattatcattgattttctgcgtaactctaa 646  Q
    |||||||||||||| |||||||||||||| || ||||| ||||||   ||||| |  ||||  ||||| ||||| || |||||||| ||    | | | |    
T  91523 tatggtgaaagatcggcaacattgaaggttgctgagacaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactattttga 91424  T
Q  647 aaggaccatcagctcttggagataacttggcatttgctttgttaggaaatcgttccttacgcaa 710  Q
    | ||||||||||||||||| || ||||||||||||| ||  || ||||||||||| || |||||    
T  91423 agggaccatcagctcttggtgacaacttggcatttggttgtttgggaaatcgttctttgcgcaa 91360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 105 - 494
Target Start/End: Complemental strand, 31487069 - 31486670
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 202  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| ||||||  ||| ||||||||| ||      
T  31487069 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatct 31486970  T
Q  203 -------gccaaaacactaaa-tggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 294  Q
           ||||||||||| |  |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||    
T  31486969 tgagtatgccaaaacacttaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctggaaacaaagaaaagtccag 31486870  T
Q  295 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccc 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31486869 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccc 31486770  T
Q  395 tagtattctagagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattctc 494  Q
    ||||||||||||||||||||||||||||| |||||||||||||  || |||||||||| ||||||| ||||||||||| || |||||||||| |||||||    
T  31486769 tagtattctagagacttctatattattctctagtcttctagaggcttccacattattccctagtattctagagtcttccatattattcttcaccattctc 31486670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 105 - 494
Target Start/End: Complemental strand, 31489353 - 31488954
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgat-- 202  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||  |||||||| ||||||  ||| ||||||||| ||      
T  31489353 tggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatct 31489254  T
Q  203 -------gccaaaacactaaa-tggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 294  Q
           ||||||||||| |  |||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||| ||    
T  31489253 tgagtatgccaaaacacttaggtggtgagccttatttatactactttaggaaggctctccattacaaactagaaatatctggaaacaaagaaaagtccag 31489154  T
Q  295 agatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgcttatttagtagtatctagtagcttccttattattccc 394  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31489153 agatatggatactctagtacataagcttagaaggatctagaaaagctaagacttccctagtgcttatttagtagtgtctagtagcttccttattattccc 31489054  T
Q  395 tagtattctagagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattctc 494  Q
    ||||||||||||||||||||||||||||||||||||| |||||| || |||||||||| ||||||| ||||||||||| || |||||||||| |||||||    
T  31489053 tagtattctagagacttctatattattctttagtcttttagagacttccacattattccctagtattctagagtcttccatattattcttcaccattctc 31488954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 115 - 451
Target Start/End: Complemental strand, 29802152 - 29801805
Alignment:
Q  115 acaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattat-att---at--ttgaatgtttctatgcttgatgatgccaaa 208  Q
    |||||| ||||||||||||||||||  ||||||||||||||||||||| || ||||||| |||   ||  ||||||  ||| ||||||||  ||||| ||    
T  29802152 acaaaatgaaaggtagagaaaatagtaaaactctctaatattctcaaaaaagatattattatttgaatgcttgaattcttcaatgcttgactatgcctaa 29802053  T
Q  209 acactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactc 308  Q
    |||||   |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||     
T  29802052 acacttggtggtgagccttatttatactactctaggaagactccccattacaaactagaaatatctacaaacaaagaaaagtctagagatatggatgcta 29801953  T
Q  309 tagtacataagcctagaaggatctagaaaagttaagacttccctagtgctta--tttagtagtatctagtagc----ttccttattattccctagtattc 402  Q
    |||| |||| | |||||||||| ||||||  |||||| ||  | ||||||||  ||||| ||| |||||||||    |||||||||||||  ||||||||    
T  29801952 tagttcatatgactagaaggatttagaaacattaagatttttccagtgcttaattttag-agtgtctagtagctagattccttattattctttagtattc 29801854  T
Q  403 tagagacttctatattattctttagtcttctagagatttacacattatt 451  Q
    |||| |||||  ||||||||||| || ||||||||| || || ||||||    
T  29801853 tagatacttccctattattctttggtgttctagagacttccatattatt 29801805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 113 - 453
Target Start/End: Original strand, 34576612 - 34576969
Alignment:
Q  113 ggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgccaaaacac 212  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||     |||||||||||||| ||  || ||| |  ||||| ||||||    
T  34576612 ggacaaaaggtaaggtagagaaaatagagaaactctctaatattctcaaagaaag----atattatttgaatgcttgaattcttca--atgcctaaacac 34576705  T
Q  213 taaatggtgaaccttatttatactactct-aggaagactctccattacaaactagaaatatctagaaaca---------aagaaaagtctagagatatgg 302  Q
    |  ||||||| |||||||||||||| ||| |||||| |||| ||||||||||||||||||||||||||||         |||||||||||||||| |||     
T  34576706 ttgatggtgagccttatttatactaatcttaggaaggctctacattacaaactagaaatatctagaaacattgattacaaagaaaagtctagagacatga 34576805  T
Q  303 atactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgc-----------ttatttagt--agtatctagtagcttccttatta 389  Q
    |||||||||| |||| | ||||||||||||||||||||||||| ||| |||||||           |||||||||  ||| || |||||||||||  |||    
T  34576806 atactctagttcatatgactagaaggatctagaaaagttaagatttctctagtgcgtaattttattttatttagtagagtgtccagtagcttcctcgtta 34576905  T
Q  390 ttccctagtattctagagacttctatattattctttagtcttctagagatttacacattattct 453  Q
    |||  ||||||| |||||||||| ||||||||||||||| ||||||||| || |||||||||||    
T  34576906 ttctttagtattttagagacttccatattattctttagtgttctagagacttccacattattct 34576969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 105 - 281
Target Start/End: Original strand, 42277782 - 42277965
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga-----t 199  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||     |    
T  42277782 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgattcttt 42277880  T
Q  200 ga---tgccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 281  Q
    ||   |||| ||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42277881 gaatgtgcctaaacacttagtggtgagccttatttatactactctaggaagactctacattacaaactagaaatatctagaaaca 42277965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 105 - 437
Target Start/End: Complemental strand, 23860187 - 23859825
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaa-atattatattatttgaatgtttctatgcttga----- 198  Q
    ||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||| ||||  |||||||| |||||||| ||||||||         
T  23860187 tggctcagggacaaaaggaaaagcatagaaaatagagaaactctctaatattctcaaagaaagatat--tattatttaaatgtttcaatgcttgagtatc 23860090  T
Q  199 -tg---atgccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaa---------acaaaga 285  Q
     ||   || |  |||||||   |||||| |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||         |||||||    
T  23860089 ttgaatatacgtaaacacttggtggtgagccttatttatactactctaggaaggctctacattacaaactagaattatctagaaatattgattacaaaga 23859990  T
Q  286 aaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtg-----------cttatttagtag--tatc 372  Q
    || | ||||| | ||| |||||||||| |||||| ||||||||||||||||||| ||||| ||| ||||||            |||||||||||  | |     
T  23859989 aaggcctagaaacatgcatactctagttcataagactagaaggatctagaaaagctaagatttctctagtgtctaattttattttatttagtagaatgtt 23859890  T
Q  373 tagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagag 437  Q
    ||||||||||||||||||| | |||||||||||||||| | ||||||||||||||| ||||||||    
T  23859889 tagtagcttccttattatttcatagtattctagagactcccatattattctttagtgttctagag 23859825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 417 - 579
Target Start/End: Original strand, 34576903 - 34577065
Alignment:
Q  417 ttattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattctccccgggttggagaagactcgtc 516  Q
    |||||||||||| || |||||| || || |||||||| |||| | |||||| |||| |  ||||||||||||||||||||| ||||||||||||||||||    
T  34576903 ttattctttagtattttagagacttccatattattctttagtgttctagagacttccacattattcttcatcattctccccaggttggagaagactcgtc 34577002  T
Q  517 ctcgagtcgaaagtcttcttcatcgccaaagtatggtgaaagatcagcaacattgaaggtagc 579  Q
    |||  ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  34577003 ctcttgtcgaaagtattcttcatcgccaaagtatggtgaaagatcagtaacattgaaggtagc 34577065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 105 - 281
Target Start/End: Original strand, 42275556 - 42275739
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttga-----t 199  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| || |||||     |    
T  42275556 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatacttgattcttt 42275654  T
Q  200 ga---tgccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 281  Q
    ||   |||| ||||||| | |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  42275655 gaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 42275739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 111 - 246
Target Start/End: Original strand, 8995076 - 8995210
Alignment:
Q  111 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgccaaaac 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| ||| ||||||||  ||  ||||||    
T  8995076 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgagtattacaaaac 8995174  T
Q  211 actaaatggtgaaccttatttatactactctaggaa 246  Q
    |||   ||| || |||||||||||||||||||||||    
T  8995175 acttggtggagagccttatttatactactctaggaa 8995210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 105 - 199
Target Start/End: Original strand, 5164151 - 5164244
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgat 199  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| |||||||||    
T  5164151 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgcttcaatgcttgat 5164244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 39816089 - 39816151
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaa 167  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39816089 tggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaa 39816151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 111 - 185
Target Start/End: Complemental strand, 15730093 - 15730020
Alignment:
Q  111 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatg 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||| |||||||    
T  15730093 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaataaaa-gttatattacttgaatg 15730020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 758 - 840
Target Start/End: Complemental strand, 29236433 - 29236352
Alignment:
Q  758 gcttgtctcgctgagtcttataccttgaattctgtttttcaattcttccacgaacttgttcatgcatcttcttgatttcattg 840  Q
    |||||||||||| |||||||| || |||||| |||||| ||| |||| |||||||||||||||| | ||||||||||||||||    
T  29236433 gcttgtctcgctaagtcttattccctgaattttgtttt-caaatctttcacgaacttgttcatgtaacttcttgatttcattg 29236352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 382 - 494
Target Start/End: Complemental strand, 15729981 - 15729870
Alignment:
Q  382 ccttattattccctagtattctagagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttatt 481  Q
    |||||||||||  ||||||||||||||||||  || ||||||||  | | ||||||| || ||||||||||| || | | |||||| | || || |||||    
T  15729981 ccttattattctttagtattctagagacttccttaatattcttttatgt-ctagagacttccacattattctttattgttctagagacatccatattatt 15729883  T
Q  482 cttcatcattctc 494  Q
    |||||||||||||    
T  15729882 cttcatcattctc 15729870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 477 - 840
Target Start/End: Complemental strand, 8535421 - 8535056
Alignment:
Q  477 ttattcttcatcattctccccgggttggagaagactcgtcctcgagtcgaaagtcttcttcatcgccaaagtatggtgaaagatcagcaacattgaaggt 576  Q
    |||| |||||||||| ||| ||||||||||||||||||||||||| |||||| ||||||| || | |||| ||||||||||||||| ||||||| |||||    
T  8535421 ttatacttcatcattatcctcgggttggagaagactcgtcctcgaatcgaaaatcttctttattgtcaaaatatggtgaaagatcaacaacattaaaggt 8535322  T
Q  577 agcagagactccatagtcacctggtagctctatttg-taggcattatcattgattttctgcgtaactctaaaaggaccatcagctcttggagataacttg 675  Q
    ||||||||||||||||||| ||| || ||||||||  |||||||||||||||||||||| ||||||||| |||| ||||| | |||||||| ||||||||    
T  8535321 agcagagactccatagtcagctgataactctattttataggcattatcattgattttctacgtaactctgaaagaaccattaactcttggaaataacttg 8535222  T
Q  676 g-catttgctttgttaggaaatcgttccttacgcaagtggatacaaactaagtctccttcattaaatgtgtgcaacttgcgatgcttgtctcgctgagtc 774  Q
    | |||||| ||| |||||||| |||||||| ||||||||||| || || || ||||||||  | |||||||||| |||| ||||||||||||||||||||    
T  8535221 gacatttggtttattaggaaagcgttcctttcgcaagtggatccataccaactctccttccatgaatgtgtgcagcttgtgatgcttgtctcgctgagtc 8535122  T
Q  775 ttataccttgaattctgtttttcaattcttccacgaacttgttcatgcatcttcttgatttcattg 840  Q
    |||||||||||||| || |||||||||| | ||| |||||||||||||| ||||||||||| ||||    
T  8535121 ttataccttgaattttgcttttcaattcattcacaaacttgttcatgcaacttcttgattttattg 8535056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 217 - 489
Target Start/End: Original strand, 18966231 - 18966518
Alignment:
Q  217 tggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggatactctagtacat 316  Q
    |||||| |||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||| |    
T  18966231 tggtgagccttatttatactactctaggaagacactccatgacacactagaaatatctagaaaccaagaaaagtcaagagatatggatactctagtacgt 18966330  T
Q  317 aagcctagaaggatctagaaaagttaagacttccctagtgctt-----------atttagt--agtatctagtagcttccttattattccctagtattct 403  Q
    | | |||||||||||||||||  |||||| || ||||||||||           |||||||  |||||||||||||| ||||||||||  ||||||||||    
T  18966331 atgactagaaggatctagaaacattaagattttcctagtgcttaattttatttcatttagtagagtatctagtagctaccttattattatctagtattct 18966430  T
Q  404 agagacttctatattattctttagtcttctagagatttacacattattctctagtatcct--agagtcttctattttattcttcatca 489  Q
    |||||||||  ||||||||||| || ||||||||| || ||||||||||| |||||| ||  |||| |||| || |||||||||||||    
T  18966431 agagacttccctattattctttggtgttctagagacttccacattattctttagtattctagagagacttccatattattcttcatca 18966518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 105 - 281
Target Start/End: Complemental strand, 4531020 - 4530835
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatg---- 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||||        
T  4531020 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgatgatgc 4530922  T
Q  201 ------atgccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaaca 281  Q
          ||||||||||||||  |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  4530921 ttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatctagaaaca 4530835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 105 - 275
Target Start/End: Complemental strand, 4533317 - 4533138
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatg---- 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||| ||| ||||||||||        
T  4533317 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgcttgatgatgc 4533219  T
Q  201 ------atgccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatcta 275  Q
          ||||||||||||||  |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  4533218 ttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacattacaaactagaaatatcta 4533138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 281 - 356
Target Start/End: Complemental strand, 1701179 - 1701104
Alignment:
Q  281 aaagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtg 356  Q
    ||||||||| ||||| ||||||||| |||| | |||| | ||||||||||||||||||||||||| ||||||||||    
T  1701179 aaagaaaagcctagaaatatggataatctaattcatatgactagaaggatctagaaaagttaagatttccctagtg 1701104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 649 - 710
Target Start/End: Original strand, 5378486 - 5378547
Alignment:
Q  649 ggaccatcagctcttggagataacttggcatttgctttgttaggaaatcgttccttacgcaa 710  Q
    ||||||||||||||||| || ||||||||||||| ||  |||||||||||||| || |||||    
T  5378486 ggaccatcagctcttggtgacaacttggcatttggttgtttaggaaatcgttctttgcgcaa 5378547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 282 - 338
Target Start/End: Complemental strand, 8535578 - 8535522
Alignment:
Q  282 aagaaaagtctagagatatggatactctagtacataagcctagaaggatctagaaaa 338  Q
    |||||||||||||||||||||||||| ||||  ||| | ||||||||||||| ||||    
T  8535578 aagaaaagtctagagatatggatactttagtttatatgactagaaggatctaaaaaa 8535522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 409 - 489
Target Start/End: Complemental strand, 39578315 - 39578235
Alignment:
Q  409 cttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatca 489  Q
    |||| ||||||||||||||| ||||  | | || ||||||||||| |||||| ||||||||||| || | |||||||||||    
T  39578315 cttccatattattctttagtgttctgtaaactttcacattattctttagtattctagagtcttccatatcattcttcatca 39578235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 486 - 524
Target Start/End: Complemental strand, 4532950 - 4532912
Alignment:
Q  486 atcattctccccgggttggagaagactcgtcctcgagtc 524  Q
    ||||||||||||||||||||  |||||||||||||||||    
T  4532950 atcattctccccgggttggaagagactcgtcctcgagtc 4532912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 144; Significance: 3e-75; HSPs: 4)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 105 - 360
Target Start/End: Complemental strand, 29514 - 29261
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |  | |||||||| |||| ||| ||||||||  ||||    
T  29514 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaagttgt-tattatttaaatgcttcaatgcttgagtatgc 29416  T
Q  205 caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagagatatggat 304  Q
    | |  ||||   |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  29415 ctacgcacttggtggtgagccttatttatactactctaggaagactctccattacaaactaaaaatatctagaaac-aagaaaagtctagagatatggat 29317  T
Q  305 actctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctta 360  Q
      ||||||||||| | |||||||||||||||||  |||||| ||||||||||||||    
T  29316 gttctagtacatatgactagaaggatctagaaacattaagatttccctagtgctta 29261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 104 - 360
Target Start/End: Complemental strand, 31830 - 31574
Alignment:
Q  104 gtggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatg 203  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |  | ||||||||||||| | | ||||||||  |||    
T  31830 gtggctcaaggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaatttgt-tattatttgaatgctacaatgcttgagtatg 31732  T
Q  204 ccaaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctagag--atatg 301  Q
    || | |||||   |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||  |||||    
T  31731 cctacacacttggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctaaaaac-aagaaaagtctagagatatatg 31633  T
Q  302 gatactctagtacataagcctagaaggatctagaaaagttaagacttccctagtgctta 360  Q
    |||  ||||||||||| | |||||||||||||||||  |||||| ||||||||||||||    
T  31632 gatgttctagtacatatgactagaaggatctagaaacattaagatttccctagtgctta 31574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 406 - 494
Target Start/End: Complemental strand, 29209 - 29121
Alignment:
Q  406 agacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattctc 494  Q
    ||||||| ||||||||||| | | ||||||||| || |||||| |||| |||| |  ||||| |||| || ||||||||||||||||||    
T  29209 agacttccatattattcttgaatgttctagagacttccacattgttctttagtgttttagagacttccatattattcttcatcattctc 29121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 406 - 493
Target Start/End: Complemental strand, 31527 - 31440
Alignment:
Q  406 agacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatcattct 493  Q
    ||||||| ||||||||||| ||| ||||||||| || |||||| |||| |||| |  |||||  ||| || |||||||||||||||||    
T  31527 agacttccatattattcttgagtgttctagagacttccacattgttctttagtgttttagagagttccatattattcttcatcattct 31440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 141; Significance: 2e-73; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 105 - 318
Target Start/End: Complemental strand, 1801 - 1579
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||  |||||||| ||||||| ||| ||||||||||||||    
T  1801 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatatcctcaaagaaaag-ttatattacttgaatgattcaatgcttgatgatgc 1703  T
Q  205 ----------caaaacactaaatggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaaacaaagaaaagtctag 294  Q
              ||||||||||  |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1702 ttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattacaaactagaaatatctagaaacaaagaaaagtctag 1603  T
Q  295 agatatggatactctagtacataa 318  Q
    ||||||||||||||||||||||||    
T  1602 agatatggatactctagtacataa 1579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 1e-28; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 217 - 424
Target Start/End: Complemental strand, 21199372 - 21199146
Alignment:
Q  217 tggtgaaccttatttatactactctaggaagactctccattacaaactagaaatatctagaa---------acaaagaaaagtctagag--atatggata 305  Q
    |||||||||||||||||| ||||| |||||| || | |||||||||||||||||||||||||         |||| |||| | ||||||  |||||||||    
T  21199372 tggtgaaccttatttatagtactccaggaaggctgtacattacaaactagaaatatctagaaacattgattacaatgaaaggcctagagacatatggata 21199273  T
Q  306 ctctagtacataagcctagaaggatctagaaaagttaagacttccctagtgc------ttatttagt--agtatctagtagcttccttattattccctag 397  Q
    ||| ||| |||| | |||||||||||||||||  |||||| ||  |||||||      |||||||||  ||| | ||||||||||||||||||||| |||    
T  21199272 ctccagttcatatgactagaaggatctagaaacattaagatttaactagtgctttattttatttagtagagtgtatagtagcttccttattattccatag 21199173  T
Q  398 tattctagagacttctatattattctt 424  Q
    ||||||||||||||| |||||||||||    
T  21199172 tattctagagacttccatattattctt 21199146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 107 - 251
Target Start/End: Complemental strand, 20642359 - 20642217
Alignment:
Q  107 gctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgcca 206  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||  | ||||||||||| ||| ||||||||  || ||     
T  20642359 gctcagggacaaaatgaaaggtagagaaaatagagaaattctctaatattctcaaag-aaatatatttttatttgaatgcttcaatgcttgactat-cct 20642262  T
Q  207 aaacactaaatggtgaaccttatttatactactctaggaagactc 251  Q
    | |||||  ||| ||| |||||||||||||||| |||||||||||    
T  20642261 acacacttgatgatgagccttatttatactactgtaggaagactc 20642217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 710
Target Start/End: Original strand, 16772822 - 16772985
Alignment:
Q  548 tatggtgaaagatcagcaacattgaaggtagcagagactccatagtcacctggtagctctat-ttgtaggcattatcattgattttctgcgtaactctaa 646  Q
    |||||||||||||| |||||||||||||| || ||||| ||||||   ||||| |  ||||  ||||| ||||| || |||||||| ||    | | | |    
T  16772822 tatggtgaaagatcggcaacattgaaggttgctgagacaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactattttga 16772921  T
Q  647 aaggaccatcagctcttggagataacttggcatttgctttgttaggaaatcgttccttacgcaa 710  Q
    | ||||||||||||||||| || ||||||||||||| ||  || ||||||||||| || |||||    
T  16772922 agggaccatcagctcttggtgacaacttggcatttggttgtttgggaaatcgttctttgcgcaa 16772985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 710
Target Start/End: Complemental strand, 32707948 - 32707785
Alignment:
Q  548 tatggtgaaagatcagcaacattgaaggtagcagagactccatagtcacctggtagctctat-ttgtaggcattatcattgattttctgcgtaactctaa 646  Q
    |||||||||||||| |||||||||||||| || ||||| ||||||   ||||| |  ||||  ||||| ||||| || |||||||| ||    | | | |    
T  32707948 tatggtgaaagatcggcaacattgaaggttgctgagacaccataggttcctggcaattctaccttgtaagcattgtcgttgattttttgaactattttga 32707849  T
Q  647 aaggaccatcagctcttggagataacttggcatttgctttgttaggaaatcgttccttacgcaa 710  Q
    | ||||||||||||||||| || ||||||||||||| ||  || ||||||||||| || |||||    
T  32707848 agggaccatcagctcttggtgacaacttggcatttggttgtttgggaaatcgttctttgcgcaa 32707785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 3707 - 3785
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaat 184  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||    
T  3707 tggctcagggacaaaaggaaaggtagagaaaatagagtaactctctaatattctcaaagaaagt-ttatattatttgaat 3785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 64; Significance: 2e-27; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 105 - 204
Target Start/End: Complemental strand, 88531 - 88433
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgatgatgc 204  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||  |||||||| ||||||| ||| ||| ||||||||||    
T  88531 tggctcagggacaaaaggaaaggtagagaaaatagagaaagactctaatattctcaaagaaaa-gttatattacttgaatgattcaatgtttgatgatgc 88433  T

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Target: scaffold0008; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 405 - 489
Target Start/End: Complemental strand, 73153 - 73069
Alignment:
Q  405 gagacttctatattattctttagtcttctagagatttacacattattctctagtatcctagagtcttctattttattcttcatca 489  Q
    |||||||||||||||||||||||||||||||||| || || ||||||||  |  || |||||| |||| || |||||||||||||    
T  73153 gagacttctatattattctttagtcttctagagacttccatattattcttcaccattctagagacttccatattattcttcatca 73069  T

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Target: scaffold1361 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 105 - 199
Target Start/End: Complemental strand, 140 - 46
Alignment:
Q  105 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatgtttctatgcttgat 199  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||  |||  |||||||| ||||||| ||| |||||||||    
T  140 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactttaatattctcaaacgaaaagttatattacttgaatgattcaatgcttgat 46  T

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Target: scaffold0312 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 371 - 438
Target Start/End: Complemental strand, 11358 - 11291
Alignment:
Q  371 tctagtagcttccttattattccctagtattctagagacttctatattattctttagtcttctagaga 438  Q
    ||||||||||||||||||||||  ||  ||| |||||||||| ||||||||||||||| |||||||||    
T  11358 tctagtagcttccttattattctttaacattatagagacttccatattattctttagtgttctagaga 11291  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 64137 - 64082
Alignment:
Q  109 tcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaa 166  Q
    |||| ||||||| |||||||| ||||||||||||||  | ||||||||||||||||||    
T  64137 tcagagacaaaatgaaaggtaaagaaaatagagaaa--ccctaatattctcaaagaaa 64082  T

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Target: scaffold0045; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 71469 - 71414
Alignment:
Q  109 tcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaa 166  Q
    |||| ||||||| |||||||| ||||||||||||||  | ||||||||||||||||||    
T  71469 tcagagacaaaatgaaaggtaaagaaaatagagaaa--ccctaatattctcaaagaaa 71414  T

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