View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880R-Insertion-13 (Length: 833)
Name: NF2880R-Insertion-13
Description: NF2880R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880R-Insertion-13 |
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Alignment Details
Target: chr6 (Bit Score: 779; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 779; E-Value: 0
Query Start/End: Original strand, 9 - 831
Target Start/End: Original strand, 21376211 - 21377032
Alignment:
| Q |
9 |
aaacaaacctggaagaatgactcttttctcctctgttctctcctctattcctccatattatatggaaattttttggcttcctcaatcaatttgtagtcgc |
108 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
21376211 |
aaacaaatctggaagaatgactcttgcctcctctgttctctcctctattcctccatattatatggaatttttttggcttcctcaatcaatttgtaatcgc |
21376310 |
T |
|
| Q |
109 |
attgatcaaacaaccaggaatttcatctggaaaggttcaaatgataaaggcatttatctggtaggttggaaaaaactacccgtcccatgactcttggtgg |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21376311 |
attgatcaaacaaccaggaatttcatctggaaaggttcaaatgataaaggcattcatctggtaggttggaaaaaactacccgtcccatgactcttggtgg |
21376410 |
T |
|
| Q |
209 |
cctttgaatcaggagagccagggaattgaatacttgccttcttggaaagcttgtttgggatttgatccaatcatctgaaaaactttgggtcagtatcctc |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21376411 |
cctttgaatcaggagagccagggaattgaatacttgccttcttggaaagcttgtttgggatttgatccaatcatctgaaaaactttgggtcagtatcctc |
21376510 |
T |
|
| Q |
309 |
tctaacaaatatgtggttggtcataacatccttcaagcaactaataattcgaacaactctccaatttggtcctcaattatcaaagctaaaaatgccctta |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21376511 |
tctaacaaatatgtggttggtcataacatccttcaagcaactaataattcgaacaactctccaatttggtcctcaattatcaaagctaaaaatgccctta |
21376610 |
T |
|
| Q |
409 |
aagtgggatactcttggtgtgtcgggtccgtttcttcatccttttggtttactcgaaggagcttttttggtgttcttgggtctcttgtcccttatattga |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21376611 |
aagtgggatactcttggtgtgtcgggtccgtttcttcatccttttggtttactcgaaggagcttttttggtgttcttgggtctcttgtcccttatattga |
21376710 |
T |
|
| Q |
509 |
catacatgacttgcatctaaccgtaaaagatgtgctcacttctaatgatccccacacgaatattctgccatctaatacaatttatgatcacataaacctc |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
21376711 |
catacatgacttgcatctaaccgtaaaagatgtgctcacttctaatgatccccacacgaatattctgctatctaatacaatttatgatcacataaacctc |
21376810 |
T |
|
| Q |
609 |
actcacatgaatttcaatgataccgaggaagatccagttctatggaacaaccaaaagaatggtattcatactccaaaaagcggttacatctggcttctca |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21376811 |
actcacatgaatttcaatgataccgaggaagatccagttctatggaacaaccaaaagaatggtattcatactccaaaaagcggttacatctggcttctca |
21376910 |
T |
|
| Q |
709 |
ataattccgatagagttgatcaaaccaacaccttcactcttcgatttggatttggaagttttgtcttcccgaaaaatataaatttcttttttggctgact |
808 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21376911 |
ataattccgacagagttgatcaaaccaacaccttcactctttgatttggatttggaagttttgtcttcccgaaaaatataaatttcttttttggctgact |
21377010 |
T |
|
| Q |
809 |
tgtaacaatccgggttcctacct |
831 |
Q |
| |
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||||||||||| ||||||||||| |
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| T |
21377011 |
tgtaacaatcc-ggttcctacct |
21377032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 485 - 574
Target Start/End: Original strand, 9535735 - 9535824
Alignment:
| Q |
485 |
tgggtctcttgtcccttatattgacatacatgacttgcatctaaccgtaaaagatgtgctcacttctaatgatccccacacgaatattct |
574 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||||| || || || |||||||| ||| || | |||||||| || || |||||||| |
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| T |
9535735 |
tgggtctcttgtcccttatattgatatccatgacttgcagctcactgttaaagatgttctctctgcaaatgatccgcagacaaatattct |
9535824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 259
Target Start/End: Complemental strand, 1353292 - 1353140
Alignment:
| Q |
108 |
cattgatcaaacaaccaggaatttcatctggaaaggttcaaatgataaaggcatttatctggtaggttggaaaaa-actacccgtcccatgactcttggt |
206 |
Q |
| |
|
||||||||||||||| || |||||||| | || | || ||||||||||| ||||| || | |||||||||||||| | | | ||||| | |||||||| |
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| T |
1353292 |
cattgatcaaacaactagaaatttcatttagagaagtacaaatgataaaagcattcatttagtaggttggaaaaagatttctcgtcctaaatctcttggt |
1353193 |
T |
|
| Q |
207 |
ggcctttgaatcaggagagccagggaattgaatacttgccttcttggaaagct |
259 |
Q |
| |
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|||||| ||||||| ||| ||||| ||||||||||||| | |||||||| |
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| T |
1353192 |
ggccttggaatcagatcagctagggaggcgaatacttgccttttaggaaagct |
1353140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 35062642 - 35062546
Alignment:
| Q |
82 |
tggcttcctcaatcaatttgtagtcgcattgatcaaacaaccaggaatttcatctggaaaggttcaaatgataaaggcatttatctggtaggttgga |
178 |
Q |
| |
|
||||||| |||||||||||| | |||||||| |||||||||| ||||| || | || ||| |||||||| ||||| || ||||||||||||||| |
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| T |
35062642 |
tggcttctccaatcaatttgtgatagcattgataaaacaaccagaaatttaatttagagaggctcaaatgacaaaggtatccatctggtaggttgga |
35062546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 143
Target Start/End: Complemental strand, 6640573 - 6640479
Alignment:
| Q |
49 |
tcctctattcctccatattatatggaaattttttggcttcctcaatcaatttgtagtcgcattgatcaaacaaccaggaatttcatctggaaagg |
143 |
Q |
| |
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||||| |||||| |||| |||||| | ||| ||||||||||||| |||||| | | ||||||||||||||| | ||||||||||||||||| |
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| T |
6640573 |
tcctccattcctacatactatatgcagattaattggcttcctcaaaatatttgtgatagtattgatcaaacaacccgcaatttcatctggaaagg |
6640479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 651 - 709
Target Start/End: Complemental strand, 25122032 - 25121974
Alignment:
| Q |
651 |
tggaacaaccaaaagaatggtattcatactccaaaaagcggttacatctggcttctcaa |
709 |
Q |
| |
|
|||||||||||||||||||| | | || ||| |||||| ||||||| |||||||||||| |
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| T |
25122032 |
tggaacaaccaaaagaatggcacttattctcaaaaaagtggttacaactggcttctcaa |
25121974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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