View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880R-Insertion-14 (Length: 785)
Name: NF2880R-Insertion-14
Description: NF2880R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880R-Insertion-14 |
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| [»] scaffold0005 (2 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 7 - 444
Target Start/End: Original strand, 224459 - 224894
Alignment:
| Q |
7 |
cacctaatgtgtccataatcatgtttacccaaagcatttgaacagcagtaaggggagcagatcctgtgattcattgaccattgtgattaaaatcatctaa |
106 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
224459 |
cacctaatgtgtccataatcatgtttacccatagcatttgaacagcagtaaggggagcagatcctgtgattcatttcccattgtgattaaaatcatctaa |
224558 |
T |
|
| Q |
107 |
tatggtttctaatatctaatatgaacagactacttagttatgtagtaccgacacttcatattaaagttagggccggcccgagggtaaggccactaaagct |
206 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||| |||||||||| |
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| T |
224559 |
tatggtttctaatatctaatatgatcagactacttagttatgtagtaccgacacttcatattaaagtcagggtcggcctgag--taaggtcactaaagct |
224656 |
T |
|
| Q |
207 |
ttcgttttaggcctactaacaaaaagacctcgtatacaaaccaaaagagg-ctcaaatatcaaataacaaaaaggcctcgtatacagaccaatgaactat |
305 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
224657 |
ctcgttttagggctactaacaaaaagacctcgtatacagacc-aaagaggcctcaaatatcaaataacaaaaaggcctcgtatacagagcaatgaactat |
224755 |
T |
|
| Q |
306 |
ttatctatgtagttctgacacttcatattaaagccaagactggcccgaaggtaaggccactaaagctctcgctttaagcttaccaacaaaagaattattt |
405 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
224756 |
ttatctatgtagttctgacacttcatattaaagccaagactggctcgaaggtaaggccactgaagctctcgctttaagcttaccaacaaaaaaattattt |
224855 |
T |
|
| Q |
406 |
ttcaataaattttaaaggcaaaaaggcctcgtatgcaga |
444 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
224856 |
ttcactaaattttaaaggcaaaaaggcctcgtatgcaga |
224894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 424 - 785
Target Start/End: Original strand, 224723 - 225085
Alignment:
| Q |
424 |
caaaaaggcctcgtatgcagaccaatgaactatttatctatgtagttctgacacttcatattaaagccaagattggcccgaaggtaaggccactaaagct |
523 |
Q |
| |
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|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| |
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| T |
224723 |
caaaaaggcctcgtatacagagcaatgaactatttatctatgtagttctgacacttcatattaaagccaagactggctcgaaggtaaggccactgaagct |
224822 |
T |
|
| Q |
524 |
ctggctttaagcttaccaacaaaagaattatttttcactaaattttaaaggataaaaggcctcgtatgcagaccaaagaaaccttaaatatcaaaacttg |
623 |
Q |
| |
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|| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||||||||||||| |
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| T |
224823 |
ctcgctttaagcttaccaacaaaaaaattatttttcactaaattttaaaggcaaaaaggcctcgtatgcagatcaaagaagcctcaaatatcaaaacttg |
224922 |
T |
|
| Q |
624 |
ttttaggcctcactta-tttttgagattattggaccaaccctgttaaaagcatgtcgaacgtgttggtgtctaatattgacacgacaccagcgtacttaa |
722 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
224923 |
ttttaggcctcacttactttttgagattattggaccaaccctgttaaaagcatgtcggacgtgttggtgtctaatattgacacgacaccagcacacttaa |
225022 |
T |
|
| Q |
723 |
ttacattcaaatattttcttttaataaattattattggtattggcgtgttattgtcaatatag |
785 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
225023 |
ttacattcaaatatcttcttttaataaattattattggtattggcgtgttattgtcaatatag |
225085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 7 - 444
Target Start/End: Complemental strand, 14592919 - 14592484
Alignment:
| Q |
7 |
cacctaatgtgtccataatcatgtttacccaaagcatttgaacagcagtaaggggagcagatcctgtgattcattgaccattgtgattaaaatcatctaa |
106 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14592919 |
cacctaatgtgtccataatcatgtttacccatagcatttgaacagcagtaaggggagcagatcctgtgattcatttcccattgtgattaaaatcatctaa |
14592820 |
T |
|
| Q |
107 |
tatggtttctaatatctaatatgaacagactacttagttatgtagtaccgacacttcatattaaagttagggccggcccgagggtaaggccactaaagct |
206 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||| ||||| |||||||||| |
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| T |
14592819 |
tatggtttctaatatctaatatgatcagactacttagttatgtagtaccgacacttcatattaaagtcagggtcggcctgag--taaggtcactaaagct |
14592722 |
T |
|
| Q |
207 |
ttcgttttaggcctactaacaaaaagacctcgtatacaaaccaaaagaggc-tcaaatatcaaataacaaaaaggcctcgtatacagaccaatgaactat |
305 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14592721 |
ctcgttttagggctactaacaaaaagacctcgtatacagaccaaa-gaggcctcaaatatcaaataacaaaaaggcctcgtatacagagcaatgaactat |
14592623 |
T |
|
| Q |
306 |
ttatctatgtagttctgacacttcatattaaagccaagactggcccgaaggtaaggccactaaagctctcgctttaagcttaccaacaaaagaattattt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
14592622 |
ttatctatgtagttctgacacttcatattaaagccaagactggctcgaaggtaaggccactgaagctctcgctttaagcttaccaacaaaaaaattattt |
14592523 |
T |
|
| Q |
406 |
ttcaataaattttaaaggcaaaaaggcctcgtatgcaga |
444 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
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| T |
14592522 |
ttcactaaattttaaaggcaaaaaggcctcgtatgcaga |
14592484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 424 - 785
Target Start/End: Complemental strand, 14592655 - 14592293
Alignment:
| Q |
424 |
caaaaaggcctcgtatgcagaccaatgaactatttatctatgtagttctgacacttcatattaaagccaagattggcccgaaggtaaggccactaaagct |
523 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||| |
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| T |
14592655 |
caaaaaggcctcgtatacagagcaatgaactatttatctatgtagttctgacacttcatattaaagccaagactggctcgaaggtaaggccactgaagct |
14592556 |
T |
|
| Q |
524 |
ctggctttaagcttaccaacaaaagaattatttttcactaaattttaaaggataaaaggcctcgtatgcagaccaaagaaaccttaaatatcaaaacttg |
623 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| ||||||||||||||| |
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| T |
14592555 |
ctcgctttaagcttaccaacaaaaaaattatttttcactaaattttaaaggcaaaaaggcctcgtatgcagatcaaagaagcctcaaatatcaaaacttg |
14592456 |
T |
|
| Q |
624 |
ttttaggcctcactta-tttttgagattattggaccaaccctgttaaaagcatgtcgaacgtgttggtgtctaatattgacacgacaccagcgtacttaa |
722 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
14592455 |
ttttaggcctcacttactttttgagattattggaccaaccctgttaaaagcatgtcggacgtgttggtgtctaatattgacacgacaccagcacacttaa |
14592356 |
T |
|
| Q |
723 |
ttacattcaaatattttcttttaataaattattattggtattggcgtgttattgtcaatatag |
785 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14592355 |
ttacattcaaatatcttcttttaataaattattattggtattggcgtgttattgtcaatatag |
14592293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 506 - 593
Target Start/End: Original strand, 41626267 - 41626353
Alignment:
| Q |
506 |
ggtaaggccactaaagctctggctttaagcttaccaacaaaagaattatttttcactaaattttaaaggataaaaggcctcgtatgca |
593 |
Q |
| |
|
||||||||||||||| |||| | ||||||| ||||||||||| || ||||||||| |||| |||| | | |||||| ||||||||||| |
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| T |
41626267 |
ggtaaggccactaaaactcttgttttaagcctaccaacaaaa-aaatatttttcattaaaatttataagttaaaagacctcgtatgca |
41626353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 1626961 - 1626910
Alignment:
| Q |
15 |
gtgtccataatcatgtttacccaaagcatttgaacagcagtaaggggagcag |
66 |
Q |
| |
|
||||||||||||| ||| |||||||||| |||||||||||| || ||||||| |
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| T |
1626961 |
gtgtccataatcaagttaacccaaagcaattgaacagcagttagtggagcag |
1626910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 355 - 442
Target Start/End: Original strand, 41626267 - 41626353
Alignment:
| Q |
355 |
ggtaaggccactaaagctctcgctttaagcttaccaacaaaagaattatttttcaataaattttaaaggcaaaaaggcctcgtatgca |
442 |
Q |
| |
|
||||||||||||||| |||| | ||||||| ||||||||||| || ||||||||| |||| |||| | | ||||| ||||||||||| |
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|
| T |
41626267 |
ggtaaggccactaaaactcttgttttaagcctaccaacaaaa-aaatatttttcattaaaatttataagttaaaagacctcgtatgca |
41626353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 355 - 435
Target Start/End: Complemental strand, 9589854 - 9589774
Alignment:
| Q |
355 |
ggtaaggccactaaagctctcgctttaagcttaccaacaaaagaattatttttcaataaattttaaaggcaaaaaggcctc |
435 |
Q |
| |
|
|||||||| |||||| | |||| |||| ||||||||||| ||||||||||||||| |||||||||||||||||||| |||| |
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| T |
9589854 |
ggtaaggctactaaaaccctcgttttaggcttaccaacataagaattatttttcattaaattttaaaggcaaaaagacctc |
9589774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 506 - 644
Target Start/End: Complemental strand, 9589854 - 9589716
Alignment:
| Q |
506 |
ggtaaggccactaaagctctggctttaagcttaccaacaaaagaattatttttcactaaattttaaaggataaaaggcctcgtatgcagaccaaagaaac |
605 |
Q |
| |
|
|||||||| |||||| | || | |||| ||||||||||| ||||||||||||||| ||||||||||||| ||||| |||| ||| || || || || | |
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| T |
9589854 |
ggtaaggctactaaaaccctcgttttaggcttaccaacataagaattatttttcattaaattttaaaggcaaaaagacctcatatacatacgaatgagat |
9589755 |
T |
|
| Q |
606 |
cttaaatatcaaaacttgttttaggcctcacttattttt |
644 |
Q |
| |
|
|| |||||| ||||||||||||| | | ||||||||||| |
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| T |
9589754 |
ctcaaatattaaaacttgttttaagtcacacttattttt |
9589716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 357 - 444
Target Start/End: Original strand, 15889059 - 15889146
Alignment:
| Q |
357 |
taaggccactaaagctctcgctttaagcttaccaacaaaagaattatttttcaataaattttaaaggcaaaaaggcctcgtatgcaga |
444 |
Q |
| |
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||||||||||||||| ||||||||| || ||| | ||||| ||||||||||| ||||||||| | || |||||||||| |||||||| |
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| T |
15889059 |
taaggccactaaagccctcgctttaggcctacaagcaaaaatattatttttcattaaattttatatgcgaaaaggcctcatatgcaga |
15889146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 508 - 655
Target Start/End: Original strand, 15889059 - 15889207
Alignment:
| Q |
508 |
taaggccactaaagctctggctttaagcttaccaacaaaagaattatttttcactaaattttaaaggataaaaggcctcgtatgcagaccaaagaaacct |
607 |
Q |
| |
|
||||||||||||||| || |||||| || ||| | ||||| ||||||||||| ||||||||| | | |||||||||| |||||||| ||| | ||| |
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|
| T |
15889059 |
taaggccactaaagccctcgctttaggcctacaagcaaaaatattatttttcattaaattttatatgcgaaaaggcctcatatgcagataaaaaaggcct |
15889158 |
T |
|
| Q |
608 |
taaatatcaaaacttgttttaggcctcacttatttttg-agattattgg |
655 |
Q |
| |
|
| || |||||||| |||| || || ||||||||||| |||||||||| |
|
|
| T |
15889159 |
catatgccaaaacttatttttggtctaacttatttttgaagattattgg |
15889207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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