View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880R-Insertion-15 (Length: 770)
Name: NF2880R-Insertion-15
Description: NF2880R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880R-Insertion-15 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 700; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 700; E-Value: 0
Query Start/End: Original strand, 9 - 770
Target Start/End: Complemental strand, 37702481 - 37701720
Alignment:
| Q |
9 |
ctccatggcatgggcgctaacgcaatgtggcaatggaacgaattcatttcccaactcactcgtcgtttcaacctctacgttcccgatcttctcttcttcg |
108 |
Q |
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| T |
37702481 |
ctccatggcatgggcgctaacgcaatgtggcaatggaacgaattcatctcccaactcactcgtcgtttcaacatctacgttcccgatcttctcttcttcg |
37702382 |
T |
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| Q |
109 |
gtgaggctcacacctctaaacctaatcgaaccgaatcttttcaagctcagtgtgttgctgctctcatggaagcgcattgtgtgaggagaatgaatgttgt |
208 |
Q |
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| T |
37702381 |
gtgaggctcacacctctaaacctaatcgaaccgaatcttttcaagctcagtgtgttgctgctctcatggaagcgcattgtgcgaggagaatgaatgttgt |
37702282 |
T |
|
| Q |
209 |
tggtgttagttatggtggttttgttggcggagagagtggataaagttgcgnnnnnnngtgttggggtttgtttggaagataaggatatggagaatggatt |
308 |
Q |
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| T |
37702281 |
tggtgttagttatggtggttttgttggcggagagagtggagaaagttgcgttttgttgtgctggggtttgtttggaagataaggatatggagaatggatt |
37702182 |
T |
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| Q |
309 |
gtttgtggttaagaatattgatgaagctgctatgattttgattcctcagactccagagaagatgaagcagcttgttaagcttacttttgttaagcctttc |
408 |
Q |
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| T |
37702181 |
gtttgtggttaagaatattgatgaagctgctatgattttgattcctcagactccagagaagatgaagcagcttgttaagcttacttttgttaagcctttc |
37702082 |
T |
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| Q |
409 |
aaagttatgccggcttgttttctcactgatttcattgatgtgagtgnnnnnnnctcattataaagcttgattgatttcagtttaattttaattgctctaa |
508 |
Q |
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| T |
37702081 |
aaagttatgccggcttgttttctcactgatttcattgatgtgagtgtttttttctcattataaagcttgattgatttcagtttaattttaattgctctaa |
37701982 |
T |
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| Q |
509 |
ttgggatcataaactcttgttattattaggggatatagtatatggagtaatgttgtttacttaagaaattccacatgattggtcagaattttgatgattt |
608 |
Q |
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| T |
37701981 |
ttgggatcataaactcttgttattattaggggatatagtatatggagtaatgttgtttacttaagaaattccacatgattggtcagaattttgatgattt |
37701882 |
T |
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| Q |
609 |
attactggtttaagttgaagtttattacactagataatgaatgaatttggattttgttgagaaatagtattattagttgtaatagttagttacaataatt |
708 |
Q |
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| T |
37701881 |
attactggtttaagttgaagtttattacactagataatgaatgaatttggattttgttgagaaatagtattattagttgtaatagttagttacaataatt |
37701782 |
T |
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| Q |
709 |
agttacatggttacttaagttagactaagggtctgtttgaattggtttattgttgttctata |
770 |
Q |
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| T |
37701781 |
agttacatggttacttaagttagactaagggtctgtttgaattggtttattgttgttctata |
37701720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 716
Target Start/End: Original strand, 10223490 - 10223519
Alignment:
| Q |
687 |
gtaatagttagttacaataattagttacat |
716 |
Q |
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| T |
10223490 |
gtaatagttagttacaataattagttacat |
10223519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 16511633 - 16511484
Alignment:
| Q |
86 |
cgttcccgatcttctcttcttcggtgaggctcacacctctaaacctaatcgaaccgaatcttttcaagctcagtgtgttgctgctctcatggaagcgcat |
185 |
Q |
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|||||| ||||||||||||||||| || |||||||| || |||| |||| | | | ||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
16511633 |
cgttcctgatcttctcttcttcggcgaatctcacaccactttacctgttcgatctgtagcttttcaagctcagtgtgttgctgctctcatgggagcacat |
16511534 |
T |
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| Q |
186 |
tgtgtgaggagaatgaatgttgttggtgttagttatggtggttttgttgg |
235 |
Q |
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| T |
16511533 |
ggtgtgagaagtttgtatgttgttggtgttagttatggtggctttgttgg |
16511484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 674 - 712
Target Start/End: Complemental strand, 14201342 - 14201304
Alignment:
| Q |
674 |
agtattattagttgtaatagttagttacaataattagtt |
712 |
Q |
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| T |
14201342 |
agtattattagatgtaatagttagttacaataattagtt |
14201304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 679 - 715
Target Start/End: Original strand, 29051289 - 29051325
Alignment:
| Q |
679 |
tattagttgtaatagttagttacaataattagttaca |
715 |
Q |
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| T |
29051289 |
tattagatgtaatagttagttacaataattagttaca |
29051325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 687 - 732
Target Start/End: Complemental strand, 486634 - 486588
Alignment:
| Q |
687 |
gtaatagttagttacaataattagttaca-tggttacttaagttaga |
732 |
Q |
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| T |
486634 |
gtaatagttagttacaataatcagttacactggttagttaagttaga |
486588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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