View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2880R-Insertion-16 (Length: 758)
Name: NF2880R-Insertion-16
Description: NF2880R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880R-Insertion-16 |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 512 - 758
Target Start/End: Original strand, 32826829 - 32827075
Alignment:
| Q |
512 |
tagagaaagaagacctttaaatttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaagaggttgggatctagtttc |
611 |
Q |
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| T |
32826829 |
tagagaaagaagacctttaaatttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaagaggttgggatctagtttc |
32826928 |
T |
|
| Q |
612 |
gatgcttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatgtcctcatctatca |
711 |
Q |
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|| |||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
32826929 |
gaggcttgttgtccttgtacagaatgccgagattttaagggaaaagtaatcccttctaataaaactctgtcaattgcagcaacaacgtcctcatctatca |
32827028 |
T |
|
| Q |
712 |
tagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttg |
758 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32827029 |
tagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttg |
32827075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 264 - 435
Target Start/End: Original strand, 32826639 - 32826806
Alignment:
| Q |
264 |
actatcgactggtgttgggtccatttgttgggtgtgtgcgcactttccttcaacgcttcattattttggccaatgtttttcttaaccgagtcgtgctcnn |
363 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32826639 |
actatcgactggtgttgggtccatttgttgggtgtatgcgcactttccttcaacgcttcattattttggccaatgtttttcttaaccgagtcgtgctctt |
32826738 |
T |
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| Q |
364 |
nnnnnnncttccaaattgtcgagtttctcaaaatcctcacaatgttgttgagaaagctaacaacaacaccga |
435 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32826739 |
tttt----tttcaaattgtcgagtttctcaaaatcctcacaatgttgttgggaaagctaacaacaacaccga |
32826806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 9e-66; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 396 - 758
Target Start/End: Complemental strand, 39737865 - 39737503
Alignment:
| Q |
396 |
atcctcacaatgttgttgagaaagctaacaacaacaccgacttgttctaattggtcagaggaaaacgcgtcagcactatcgtcaattttttctttgactg |
495 |
Q |
| |
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|||||||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||| || |||||| || ||||||||||||| ||||||| |
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| T |
39737865 |
atcctcacaatgttgttgagaaggttaacaacagcaccgacttgttctaattggagagaggaaaatgcatcagcattagcgtcaattttttccttgactg |
39737766 |
T |
|
| Q |
496 |
tgttgaagttaacttctaga-gaaagaagacctttaaatttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaaga |
594 |
Q |
| |
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|||||| ||||||| |||| | ||| |||||| ||||||||||||||| ||||||| || |||||||| |||||||||| |||||||||| || |
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| T |
39737765 |
cgttgaaattaactt-tagaagtgagaccttctttaagtttttcaaccaagtctcctttaaaagcaatatcccttaattcctgaagaagttgctcaggga |
39737667 |
T |
|
| Q |
595 |
ggttgggatctagtttcgatgcttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaac |
694 |
Q |
| |
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| |||||||| |||| || |||| ||||||| ||| ||||| | |||||||||| || ||||||||||| ||||||||||||||||||| |||| |
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| T |
39737666 |
gattgggatcccgttttgagtattctcgtccttggacagaatgctgggattttaaggaaagagtaatcccttccgataaaactctgtcaattgccgcaat |
39737567 |
T |
|
| Q |
695 |
aatgtcctcatctatcatagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttg |
758 |
Q |
| |
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| |||||||||| ||||||||||| ||||||| ||||| ||||||| || |||||||||||| |
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| T |
39737566 |
gacatcctcatctaccatagcatcaaattcttcagagtctatgctgactaattttgaagtgttg |
39737503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 396 - 758
Target Start/End: Original strand, 39856231 - 39856593
Alignment:
| Q |
396 |
atcctcacaatgttgttgagaaagctaacaacaacaccgacttgttctaattggtcagaggaaaacgcgtcagcactatcgtcaattttttctttgactg |
495 |
Q |
| |
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|||||| ||||||| |||| || | |||||||||||||||||||||||| ||||| ||| || ||| |||| || || | ||||||||||| |||||| |
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| T |
39856231 |
atcctcgcaatgttcttgacaaggttaacaacaacaccgacttgttctagttggtgagaagagaacatgtcaacattagcttcaattttttccatgactg |
39856330 |
T |
|
| Q |
496 |
tgttgaagttaacttctagagaaagaagacctttaaatttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaagag |
595 |
Q |
| |
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||||||| |||||| ||| ||| ||||||||||||||||||||| |||||||| |||||||||||||||||| || ||||||||| || |
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| T |
39856331 |
tgttgaaactaactttaggagtgagaccttgtttaaatttttcaaccaagtcttctttaaaagcgatatccctcaattccataagaagttgctcttggaa |
39856430 |
T |
|
| Q |
596 |
gttgggatctagtttcgatgcttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaaca |
695 |
Q |
| |
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||||||||| || ||||| |||||||| ||| ||| |||| |||||||||||| || |||||||||||| |||| |||||||| || ||| ||| |
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| T |
39856431 |
gttgggatccagcttcgagacttcttgtttttgaacagaatggtgagattttaaggaaagagtaatcccttctgataacactctgtcgatcgcaccaatg |
39856530 |
T |
|
| Q |
696 |
atgtcctcatctatcatagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttg |
758 |
Q |
| |
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| |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||| |
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| T |
39856531 |
acatcctcatctatcatagcatcaatttctttcaagtctttgctgacaaattttaaagtgttg |
39856593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 375 - 726
Target Start/End: Original strand, 39863408 - 39863763
Alignment:
| Q |
375 |
caaattgtcgagtttctcaaaatcct-cacaatgttgttgagaaagctaacaacaacaccgacttgttctaattggtcagaggaaaacgcgtcagcacta |
473 |
Q |
| |
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|||||| |||||||||||||| ||| ||||||| ||||||||| | ||||||||||||| |||||||||||||| ||| | || ||||||||| || |
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| T |
39863408 |
caaattttcgagtttctcaaacaccttcacaatggtgttgagaaggttaacaacaacaccaacttgttctaattgacgagacgtgaaagcgtcagcatta |
39863507 |
T |
|
| Q |
474 |
tcgtcaattttttctttgactgtgttgaagttaacttctagagaaagaagacctttaaatttttcaaccaagtcctctttaaaggcgatatccctcaatt |
573 |
Q |
| |
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| ||||||||||| |||||||| ||||||||||||| |||| | | |||| ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
39863508 |
gcatcaattttttccttgactgtattgaagttaactttaggagagataccttcttttaatttttcaaccaagtcttctttaaaggcaatatccctcaatt |
39863607 |
T |
|
| Q |
574 |
cctgaaaaagttgctcaaagaggttgggatctagttt--cga-tgcttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaa |
670 |
Q |
| |
|
|||||| |||||||| | |||| ||||||| ||||| ||| ||||||||||||| ||| ||||| || ||| ||| | || ||| ||||||| | |
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| T |
39863608 |
cctgaagaagttgcttagggaggctgggatccagttttgcgacctcttcttgtccttgaacagaatgctgaaattgtaatgaaatggtattcccttcgga |
39863707 |
T |
|
| Q |
671 |
taaaactctgtcaattgcagcaacaatgtcctcatctatcatagcatcaatttctt |
726 |
Q |
| |
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||||||| |||| |||||||||| || |||||| |||||||||||||||| |||| |
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| T |
39863708 |
taaaactttgtcgattgcagcaataacatcctcacctatcatagcatcaatatctt |
39863763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 399 - 737
Target Start/End: Complemental strand, 38980708 - 38980370
Alignment:
| Q |
399 |
ctcacaatgttgttgagaaagctaacaacaacaccgacttgttctaattggtcagaggaaaacgcgtcagcactatcgtcaattttttctttgactgtgt |
498 |
Q |
| |
|
|||||||||||||||| || | ||||| |||| ||||||||||| ||||| |||||||||| ||||||| || |||||| |||||| ||||||| | |
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| T |
38980708 |
ctcacaatgttgttgacaaggtcaacaaagacactgacttgttctagttggttagaggaaaacaagtcagcattagcgtcaaatttttccttgactgcat |
38980609 |
T |
|
| Q |
499 |
tgaagttaacttctagagaaagaagacctttaaat---ttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaagag |
595 |
Q |
| |
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||||||| ||| ||| ||||| |||||| |||| |||||||||||||| || |||| | ||||||| ||||||||||| ||||| |||| ||| |
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| T |
38980608 |
tgaagttgtctt-tagt-aaaga-gaccttcaaataatttttcaaccaagtctcattcaaagacaatatcccacaattcctgaagaagtttctcagggag |
38980512 |
T |
|
| Q |
596 |
gttgggatctagtttcgatgcttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaaca |
695 |
Q |
| |
|
|||||||| ||||| || |||||||| |||| ||| ||||| ||||||||| || || |||||||||||| |||||||||||| || | ||||| |
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| T |
38980511 |
gttgggatacagttttgagacttcttgttcttggacagaatgctgagattttacggaaatggtaatcccttctgataaaactctgttgatagaagcaatg |
38980412 |
T |
|
| Q |
696 |
atgtcctcatctatcatagcatcaatttcttcaaagtctttg |
737 |
Q |
| |
|
| |||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
38980411 |
acatcctcatctatcatagcatcaacttctttcaagtctttg |
38980370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 616 - 741
Target Start/End: Original strand, 39897025 - 39897150
Alignment:
| Q |
616 |
cttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatgtcctcatctatcatagc |
715 |
Q |
| |
|
|||||| |||||||||| ||| || || | ||||| || |||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||| |
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|
| T |
39897025 |
cttcttctccttgtacagaattacgggactctaaggaaagagtaatcccttctgataaaactctgtcgattgcagcaatgacatcctcatctatcatagc |
39897124 |
T |
|
| Q |
716 |
atcaatttcttcaaagtctttgctga |
741 |
Q |
| |
|
|||||||||||| |||||| |||||| |
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| T |
39897125 |
atcaatttcttccaagtctatgctga |
39897150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 372 - 586
Target Start/End: Original strand, 39846488 - 39846703
Alignment:
| Q |
372 |
ttccaaattgtcgagtttctcaaa-atcctcacaatgttgttgagaaagctaacaacaacaccgacttgttctaattggtcagaggaaaacgcgtcagca |
470 |
Q |
| |
|
|||||| || |||||||||||||| |||| | |||| |||||||||||| ||||||||||| ||||||| ||||| | ||| | ||| ||||||| |
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| T |
39846488 |
ttccaatttttcgagtttctcaaacatccactcaattttgttgagaaagttaacaacaacatgaacttgttttaattcgcgagaatataacatgtcagca |
39846587 |
T |
|
| Q |
471 |
ctatcgtcaattttttctttgactgtgttgaagttaacttctagagaaagaagacctttaaatttttcaaccaagtcctctttaaaggcgatatccctca |
570 |
Q |
| |
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|| | || ||||| || |||||| |||||||| ||||| ||| |||| |||||||||| |||||||||| | |||||||||||||||||||| |
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| T |
39846588 |
ttagcttcgattttatccttgactacattgaagtttacttcacgagcaagacctagtttaaattttacaaccaagtcttttttaaaggcgatatccctca |
39846687 |
T |
|
| Q |
571 |
attcctgaaaaagttg |
586 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
39846688 |
attcctgaagaagttg |
39846703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 396 - 610
Target Start/End: Complemental strand, 53495491 - 53495279
Alignment:
| Q |
396 |
atcctcacaatgttgttgagaaagctaacaacaacaccgacttgttctaattggtcagaggaaaacgcgtcagcactatcgtcaattttttctttgactg |
495 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||| | |||||||||||| | |||||| ||||| |||||| || ||||||||||| | |||| || |
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|
| T |
53495491 |
atcctcacaatgttgttgagaaggttaacaacaacaccaatttgttctaattgctgagaggagaacgcatcagcattagcgtcaatttttaccttgattg |
53495392 |
T |
|
| Q |
496 |
tgttgaagttaacttctagagaaagaagacctttaa-atttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaaga |
594 |
Q |
| |
|
||||||||||||| | ||| ||| |||||| ||||||||||||| |||||||||| |||||||||||||||||||| |||||||| | || |
|
|
| T |
53495391 |
cattgaagttaacttttggagtgagaccttctttaatttttttcaaccaag---tctttaaaggtgatatccctcaattcctgaagaagttgcttaggga |
53495295 |
T |
|
| Q |
595 |
ggttgggatctagttt |
610 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
53495294 |
ggttgggatccagttt |
53495279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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