View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2880R-Insertion-19 (Length: 695)

Name: NF2880R-Insertion-19
Description: NF2880R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2880R-Insertion-19
NF2880R-Insertion-19
[»] chr8 (26 HSPs)
chr8 (9-695)||(2516499-2517185)
chr8 (152-306)||(2505708-2505862)
chr8 (152-270)||(2512366-2512484)
chr8 (155-242)||(1459414-1459501)
chr8 (155-242)||(2429121-2429208)
chr8 (155-242)||(2432039-2432126)
chr8 (155-245)||(2435471-2435561)
chr8 (625-687)||(10170375-10170437)
chr8 (531-580)||(2515727-2515776)
chr8 (9-50)||(2435815-2435856)
chr8 (9-49)||(2432455-2432495)
chr8 (617-668)||(34259803-34259854)
chr8 (448-554)||(2506022-2506128)
chr8 (616-658)||(3066041-3066083)
chr8 (405-461)||(2512635-2512692)
chr8 (623-656)||(25799154-25799187)
chr8 (618-658)||(1979413-1979453)
chr8 (9-49)||(2429473-2429513)
chr8 (622-656)||(16824392-16824426)
chr8 (620-654)||(31551857-31551891)
chr8 (626-668)||(43534933-43534975)
chr8 (623-656)||(25488801-25488834)
chr8 (616-668)||(6501494-6501546)
chr8 (616-668)||(14496033-14496084)
chr8 (622-658)||(28144067-28144103)
chr8 (622-658)||(29096951-29096987)
[»] chr6 (10 HSPs)
chr6 (617-658)||(34625734-34625775)
chr6 (616-658)||(34598537-34598579)
chr6 (617-652)||(14244051-14244086)
chr6 (625-655)||(6294557-6294587)
chr6 (616-658)||(30781416-30781458)
chr6 (620-658)||(32577482-32577520)
chr6 (621-658)||(4945264-4945301)
chr6 (626-658)||(7564182-7564214)
chr6 (617-657)||(17422274-17422314)
chr6 (616-668)||(24102051-24102103)
[»] chr4 (9 HSPs)
chr4 (617-658)||(32369930-32369971)
chr4 (627-669)||(18783987-18784029)
chr4 (616-669)||(3458172-3458225)
chr4 (616-659)||(26369447-26369490)
chr4 (619-658)||(31277042-31277081)
chr4 (617-659)||(12441788-12441830)
chr4 (617-658)||(843159-843200)
chr4 (625-654)||(2796554-2796583)
chr4 (622-658)||(12710008-12710044)
[»] chr3 (12 HSPs)
chr3 (623-658)||(49636844-49636879)
chr3 (617-668)||(28576716-28576767)
chr3 (611-658)||(32166201-32166248)
chr3 (615-658)||(47542533-47542576)
chr3 (625-658)||(18268023-18268056)
chr3 (623-668)||(21768612-21768657)
chr3 (623-664)||(55053787-55053828)
chr3 (616-668)||(7563206-7563258)
chr3 (623-663)||(31207845-31207885)
chr3 (622-658)||(36301998-36302034)
chr3 (624-668)||(41036776-41036820)
chr3 (593-641)||(55108269-55108317)
[»] chr1 (6 HSPs)
chr1 (622-665)||(26698193-26698236)
chr1 (611-658)||(29230059-29230106)
chr1 (624-658)||(48317604-48317638)
chr1 (617-658)||(1118414-1118455)
chr1 (624-657)||(4769327-4769360)
chr1 (618-655)||(6440870-6440907)
[»] chr2 (13 HSPs)
chr2 (617-663)||(11781576-11781622)
chr2 (618-658)||(14268751-14268791)
chr2 (619-658)||(13252319-13252358)
chr2 (617-659)||(6736490-6736532)
chr2 (616-658)||(8765419-8765461)
chr2 (616-658)||(28341323-28341365)
chr2 (625-682)||(30563417-30563474)
chr2 (618-670)||(31095144-31095197)
chr2 (618-658)||(34687007-34687048)
chr2 (618-658)||(34709419-34709460)
chr2 (623-668)||(39459790-39459835)
chr2 (626-658)||(17427327-17427359)
chr2 (618-658)||(42043215-42043255)
[»] scaffold0147 (1 HSPs)
scaffold0147 (616-669)||(37670-37723)
[»] chr7 (8 HSPs)
chr7 (595-658)||(18750852-18750917)
chr7 (617-658)||(28266474-28266515)
chr7 (617-653)||(31020714-31020750)
chr7 (615-654)||(40826513-40826552)
chr7 (623-655)||(7139462-7139494)
chr7 (617-657)||(13803668-13803708)
chr7 (624-652)||(13859528-13859556)
chr7 (616-668)||(22371078-22371130)
[»] chr5 (3 HSPs)
chr5 (627-658)||(28322251-28322282)
chr5 (625-658)||(9878050-9878083)
chr5 (624-669)||(39828473-39828518)


Alignment Details
Target: chr8 (Bit Score: 671; Significance: 0; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 671; E-Value: 0
Query Start/End: Original strand, 9 - 695
Target Start/End: Original strand, 2516499 - 2517185
Alignment:
Q  9 aatgccttctggaaagtacctaatttacataaattgatatccaccggttactggtatgtctcatgtttattgtaacacggtaactatacttttcatgtca 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2516499 aatgccttctggaaagtacctaatttacataaattgatatccaccggttactggtatgtctcatgtttattgtaacacggtaactatacttttcatgtca 2516598  T
Q  109 acaaacatattgaactaaaaaatttcgactgcatcacttatgtactgacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2516599 acaaacatattgaactaaaaaatttcgactgcatcacttatgtactgacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttca 2516698  T
Q  209 tcgtatccaaatttattttttaacagatccacctagttgcaaaagacgtacattaaagtaaaggaagacaatatttttgttggtcaataaaaagaaacta 308  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2516699 tcgtatccaaatttattttttaacatatccacctggttgcaaaagatgtacattaaagtaaaggaagacaatatttttgttggtcaataaaaagaaacta 2516798  T
Q  309 aatggattcttggtaatcatactcgttttcaagttacaacttacaacaaatcattcctaacccaagaattaagaaactattgtttgtttctgctggctgc 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2516799 aatggattcttggtaatcatactcgttttcaagttacaacttacaacaaatcattcctaacccaagaattaagaaactattgtttgtttctgctggctgc 2516898  T
Q  409 taaaattctcttcgattaggctaactatgtaacacttgtagaattgaaattttctaatatatttaggcaaattctagtaattttgcaatgtaacagtact 508  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2516899 taaaattttcttcgattaggctaactatgtaacacttgtagaattgaaattttctaatatatttaggcaaattctagtaattttgcaatgtaacagtact 2516998  T
Q  509 ttcggaatataagtattgagcaaagaccttgattgttgttattgtaattagggaaattcaaaacctatgaagcactcacacaggacacgacactacgaca 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2516999 ttcggaatataagtattgagcaaagaccttgattgttgttattgtaattagggaaattcaaaacctatgaagcactcacacaggacacgacactacgaca 2517098  T
Q  609 ctgacaatgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgttatgttggtgtcagataccagacatgc 695  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517099 ctgacaatgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgttatgttggtgtcagataccagacatgc 2517185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 152 - 306
Target Start/End: Original strand, 2505708 - 2505862
Alignment:
Q  152 actgacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttcatcgtatccaaatttattttttaacagatccacctagttgcaaa 251  Q
    ||||||||||| |||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||    
T  2505708 actgaccttttcaatgttgcattgaggtcttgctcttctttgtagttaatggcttcatcgtatccaaatttattcttcaacagatccacctggttgcaaa 2505807  T
Q  252 agacgtacattaaagtaaaggaagacaatatttttgttggtcaataaaaagaaac 306  Q
    |||  ||  || |||||||||||| | ||||||||| | || ||| |||||||||    
T  2505808 agatatatttttaagtaaaggaaggccatatttttgcttgtgaatgaaaagaaac 2505862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 152 - 270
Target Start/End: Original strand, 2512366 - 2512484
Alignment:
Q  152 actgacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttcatcgtatccaaatttattttttaacagatccacctagttgcaaa 251  Q
    ||||||||||| ||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||| || |    
T  2512366 actgaccttttcaatgctgcatccaggtcttgttcttctttgtagttaatggcttcatcgtatccaaatttattcttcaacagatccacctggttccaga 2512465  T
Q  252 agacgtacattaaagtaaa 270  Q
    |||  ||||||||||||||    
T  2512466 agatatacattaaagtaaa 2512484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 1459501 - 1459414
Alignment:
Q  155 gacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttcatcgtatccaaatttattttttaacagatccacct 242  Q
    |||||||| || ||||||||||||||  |||||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||    
T  1459501 gaccttttcaaagctgcattgaggtctggttcttctttgtagttaaaggcttcatcatatccaaatttatttttcaacaaatccacct 1459414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 2429208 - 2429121
Alignment:
Q  155 gacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttcatcgtatccaaatttattttttaacagatccacct 242  Q
    |||||||| || ||||||||||||||  |||||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||    
T  2429208 gaccttttcaaagctgcattgaggtctggttcttctttgtagttaaaggcttcatcatatccaaatttatttttcaacaaatccacct 2429121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 2432126 - 2432039
Alignment:
Q  155 gacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttcatcgtatccaaatttattttttaacagatccacct 242  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||  |||||||| |||||||||||||| || || ||||||||||    
T  2432126 gacctttttaaagctgcattgaggtcaggttcttctttgtagttaaatgcttcatcatatccaaatttattcttcaaaagatccacct 2432039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 155 - 245
Target Start/End: Complemental strand, 2435561 - 2435471
Alignment:
Q  155 gacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttcatcgtatccaaatttattttttaacagatccacctagt 245  Q
    ||||||||||| | ||||||||||||  |||||||||||||||||| ||||||||| |||||||||||||| || |||||||| |||||||    
T  2435561 gacctttttaaagttgcattgaggtctggttcttctttgtagttaaaggcttcatcatatccaaatttattcttcaacagatctacctagt 2435471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 625 - 687
Target Start/End: Complemental strand, 10170437 - 10170375
Alignment:
Q  625 taataatttgagaaaatgaattaattgaatgtaactacacgtgttatgttggtgtcagatacc 687  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||| |||||||||| ||||||    
T  10170437 taataatttgagaaaataaattaattgaatgtaactacatgggttgtgttggtgtctgatacc 10170375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 531 - 580
Target Start/End: Original strand, 2515727 - 2515776
Alignment:
Q  531 aagaccttgattgttgttattgtaattagggaaattcaaaacctatgaag 580  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||    
T  2515727 aagaccttgattgttgttattgtaattagggaaatttagaacctatgaag 2515776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 2435856 - 2435815
Alignment:
Q  9 aatgccttctggaaagtacctaatttacataaattgatatcc 50  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  2435856 aatgccttctggaaagtacctaatatacataaattgatatcc 2435815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 2432495 - 2432455
Alignment:
Q  9 aatgccttctggaaagtacctaatttacataaattgatatc 49  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  2432495 aatgccttctggaaagtacctaatttacatacattgatatc 2432455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 617 - 668
Target Start/End: Complemental strand, 34259854 - 34259803
Alignment:
Q  617 gacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 668  Q
    |||| ||||||||||||||||||||||| ||||||||| |||||| ||||||    
T  34259854 gacatcggtaataatttgagaaaatgaaataattgaatataactagacgtgt 34259803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 448 - 554
Target Start/End: Original strand, 2506022 - 2506128
Alignment:
Q  448 agaattgaaattttctaatatatttaggcaaattctagtaattttgcaatgtaacagtactttcggaatataagtattgagcaaagaccttgattgttgt 547  Q
    |||||||||||||| ||||| | |||||| |||||||||| ||| |  |  | |||||| ||||| ||||||  || |||||||| |||||||||||||     
T  2506022 agaattgaaattttgtaataaaattaggctaattctagtattttggttacattacagtaatttcgtaatatagctagtgagcaaaaaccttgattgttga 2506121  T
Q  548 tattgta 554  Q
    |||||||    
T  2506122 tattgta 2506128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 616 - 658
Target Start/End: Original strand, 3066041 - 3066083
Alignment:
Q  616 tgacaccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||||| |||||||||||||||||||| |||||||||||||||    
T  3066041 tgacacaggtaataatttgagaaaatggattaattgaatgtaa 3066083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 461
Target Start/End: Original strand, 2512635 - 2512692
Alignment:
Q  405 ctgctaaaattctcttcgattaggctaactatgt-aacacttgtagaattgaaatttt 461  Q
    |||||| |||||||||| |||||||||||||||| |||| || |||||||||||||||    
T  2512635 ctgctacaattctcttcaattaggctaactatgtaaacatttctagaattgaaatttt 2512692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 623 - 656
Target Start/End: Original strand, 25799154 - 25799187
Alignment:
Q  623 ggtaataatttgagaaaatgaattaattgaatgt 656  Q
    ||||||||||||||||||||||||||||||||||    
T  25799154 ggtaataatttgagaaaatgaattaattgaatgt 25799187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 618 - 658
Target Start/End: Original strand, 1979413 - 1979453
Alignment:
Q  618 acaccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||||||||||||||||||||||| |||||||| |||||||    
T  1979413 acaccggtaataatttgagaaaattaattaattaaatgtaa 1979453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 2429513 - 2429473
Alignment:
Q  9 aatgccttctggaaagtacctaatttacataaattgatatc 49  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  2429513 aatgccttctggaaagtatctagtttacataaattgatatc 2429473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 622 - 656
Target Start/End: Original strand, 16824392 - 16824426
Alignment:
Q  622 cggtaataatttgagaaaatgaattaattgaatgt 656  Q
    |||||||||||||||||||||||||| ||||||||    
T  16824392 cggtaataatttgagaaaatgaattatttgaatgt 16824426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 654
Target Start/End: Complemental strand, 31551891 - 31551857
Alignment:
Q  620 accggtaataatttgagaaaatgaattaattgaat 654  Q
    |||||||||||||||||||||||||| ||||||||    
T  31551891 accggtaataatttgagaaaatgaataaattgaat 31551857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 626 - 668
Target Start/End: Original strand, 43534933 - 43534975
Alignment:
Q  626 aataatttgagaaaatgaattaattgaatgtaactacacgtgt 668  Q
    ||||||||||||||||||| || ||||||||||||||| ||||    
T  43534933 aataatttgagaaaatgaaatatttgaatgtaactacatgtgt 43534975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 623 - 656
Target Start/End: Original strand, 25488801 - 25488834
Alignment:
Q  623 ggtaataatttgagaaaatgaattaattgaatgt 656  Q
    |||| |||||||||||||||||||||||||||||    
T  25488801 ggtattaatttgagaaaatgaattaattgaatgt 25488834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 616 - 668
Target Start/End: Original strand, 6501494 - 6501546
Alignment:
Q  616 tgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 668  Q
    |||||| ||||||||||||||| |||||| ||||| |||||||| ||| ||||    
T  6501494 tgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgt 6501546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 616 - 668
Target Start/End: Complemental strand, 14496084 - 14496033
Alignment:
Q  616 tgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 668  Q
    ||||||| ||||||||||||||||||| | | |||||||||||||||| ||||    
T  14496084 tgacaccagtaataatttgagaaaatg-agtgattgaatgtaactacatgtgt 14496033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 658
Target Start/End: Complemental strand, 28144103 - 28144067
Alignment:
Q  622 cggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  28144103 cggtaataatttgagaaaatcaattaatagaatgtaa 28144067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 658
Target Start/End: Original strand, 29096951 - 29096987
Alignment:
Q  622 cggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  29096951 cggtaataatttaagaaaataaattaattgaatgtaa 29096987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 617 - 658
Target Start/End: Original strand, 34625734 - 34625775
Alignment:
Q  617 gacaccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  34625734 gacaccgataataatttgagaaaatgaattaattgaatgtaa 34625775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 616 - 658
Target Start/End: Original strand, 34598537 - 34598579
Alignment:
Q  616 tgacaccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||||||| ||||||||||||||||||||||||||| ||||||    
T  34598537 tgacaccgataataatttgagaaaatgaattaattggatgtaa 34598579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 652
Target Start/End: Complemental strand, 14244086 - 14244051
Alignment:
Q  617 gacaccggtaataatttgagaaaatgaattaattga 652  Q
    |||||||||| |||||||||||||||||||||||||    
T  14244086 gacaccggtagtaatttgagaaaatgaattaattga 14244051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 625 - 655
Target Start/End: Complemental strand, 6294587 - 6294557
Alignment:
Q  625 taataatttgagaaaatgaattaattgaatg 655  Q
    |||||||||||||||||||||||||||||||    
T  6294587 taataatttgagaaaatgaattaattgaatg 6294557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 616 - 658
Target Start/End: Complemental strand, 30781458 - 30781416
Alignment:
Q  616 tgacaccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    ||||||||||| |||||||| |||||||||||| |||||||||    
T  30781458 tgacaccggtactaatttgataaaatgaattaactgaatgtaa 30781416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 620 - 658
Target Start/End: Complemental strand, 32577520 - 32577482
Alignment:
Q  620 accggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||||| || |||||||||||||||||||||||||||||    
T  32577520 accggtgatgatttgagaaaatgaattaattgaatgtaa 32577482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 621 - 658
Target Start/End: Original strand, 4945264 - 4945301
Alignment:
Q  621 ccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  4945264 ccggtaattgtttgagaaaatgaattaattgaatgtaa 4945301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 626 - 658
Target Start/End: Complemental strand, 7564214 - 7564182
Alignment:
Q  626 aataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||||||||||||||| ||||||||||||||||    
T  7564214 aataatttgagaaaataaattaattgaatgtaa 7564182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 617 - 657
Target Start/End: Complemental strand, 17422314 - 17422274
Alignment:
Q  617 gacaccggtaataatttgagaaaatgaattaattgaatgta 657  Q
    ||||||| |||||||||||||||||||  ||||||||||||    
T  17422314 gacaccgataataatttgagaaaatgatataattgaatgta 17422274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 616 - 668
Target Start/End: Complemental strand, 24102103 - 24102051
Alignment:
Q  616 tgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 668  Q
    |||||| |||||||||||||| || |||| || ||||||||||| ||||||||    
T  24102103 tgacactggtaataatttgagtaagtgaactatttgaatgtaaccacacgtgt 24102051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 617 - 658
Target Start/End: Complemental strand, 32369971 - 32369930
Alignment:
Q  617 gacaccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  32369971 gacaccgataataatttgagaaaatgaattaattgaatgtaa 32369930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 627 - 669
Target Start/End: Original strand, 18783987 - 18784029
Alignment:
Q  627 ataatttgagaaaatgaattaattgaatgtaactacacgtgtt 669  Q
    |||||||||||||||||| ||||||||||||| ||||||||||    
T  18783987 ataatttgagaaaatgaagtaattgaatgtaattacacgtgtt 18784029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 616 - 669
Target Start/End: Complemental strand, 3458225 - 3458172
Alignment:
Q  616 tgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgtt 669  Q
    ||||||||||||||| | ||||||||||| ||||||||||||| || |||||||    
T  3458225 tgacaccggtaataaatggagaaaatgaaataattgaatgtaattatacgtgtt 3458172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 659
Target Start/End: Complemental strand, 26369490 - 26369447
Alignment:
Q  616 tgacaccggtaataatttgagaaaatgaattaattgaatgtaac 659  Q
    ||||| ||||| |||||||||||||||||||| |||||||||||    
T  26369490 tgacatcggtagtaatttgagaaaatgaattatttgaatgtaac 26369447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 658
Target Start/End: Complemental strand, 31277081 - 31277042
Alignment:
Q  619 caccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  31277081 caccgataataatttgagaaaatgaactaattgaatgtaa 31277042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 617 - 659
Target Start/End: Complemental strand, 12441830 - 12441788
Alignment:
Q  617 gacaccggtaataatttgagaaaatgaattaattgaatgtaac 659  Q
    ||||||||||||| ||||||||||||||| |||||||| ||||    
T  12441830 gacaccggtaatactttgagaaaatgaatcaattgaatctaac 12441788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 658
Target Start/End: Complemental strand, 843200 - 843159
Alignment:
Q  617 gacaccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||    
T  843200 gacactggtaataatttgagaaaatgaattatttgaacgtaa 843159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 654
Target Start/End: Original strand, 2796554 - 2796583
Alignment:
Q  625 taataatttgagaaaatgaattaattgaat 654  Q
    ||||||||||||||||||||||||||||||    
T  2796554 taataatttgagaaaatgaattaattgaat 2796583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 658
Target Start/End: Original strand, 12710008 - 12710044
Alignment:
Q  622 cggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  12710008 cggtaataatttgagaaaataaattaattgaacgtaa 12710044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000007; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 623 - 658
Target Start/End: Complemental strand, 49636879 - 49636844
Alignment:
Q  623 ggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    ||||||||||||||||||||||||||||||||||||    
T  49636879 ggtaataatttgagaaaatgaattaattgaatgtaa 49636844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 668
Target Start/End: Original strand, 28576716 - 28576767
Alignment:
Q  617 gacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 668  Q
    |||||||||||||||||||||||||||   |||||||||||| |||| ||||    
T  28576716 gacaccggtaataatttgagaaaatgacaaaattgaatgtaattacatgtgt 28576767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 611 - 658
Target Start/End: Complemental strand, 32166248 - 32166201
Alignment:
Q  611 gacaatgacaccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||| |||||| |||||||||||||||||||||  |||||||||||||    
T  32166248 gacattgacactggtaataatttgagaaaatgacataattgaatgtaa 32166201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 658
Target Start/End: Original strand, 47542533 - 47542576
Alignment:
Q  615 atgacaccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    ||||||| |||||||||||||||||||||| || ||||||||||    
T  47542533 atgacactggtaataatttgagaaaatgaactatttgaatgtaa 47542576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 658
Target Start/End: Complemental strand, 18268056 - 18268023
Alignment:
Q  625 taataatttgagaaaatgaattaattgaatgtaa 658  Q
    ||||||||||||||||||||||||||||| ||||    
T  18268056 taataatttgagaaaatgaattaattgaacgtaa 18268023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 623 - 668
Target Start/End: Original strand, 21768612 - 21768657
Alignment:
Q  623 ggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 668  Q
    ||||||||||||||||||||||||| ||||| ||||| ||| ||||    
T  21768612 ggtaataatttgagaaaatgaattatttgaacgtaaccacatgtgt 21768657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 623 - 664
Target Start/End: Original strand, 55053787 - 55053828
Alignment:
Q  623 ggtaataatttgagaaaatgaattaattgaatgtaactacac 664  Q
    ||||||||||| |||||||||||||  |||||||||||||||    
T  55053787 ggtaataatttaagaaaatgaattatatgaatgtaactacac 55053828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 616 - 668
Target Start/End: Complemental strand, 7563258 - 7563206
Alignment:
Q  616 tgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 668  Q
    |||||||  |||||||||||||| ||| | |||||||||||| ||||||||||    
T  7563258 tgacaccaataataatttgagaatatggaataattgaatgtatctacacgtgt 7563206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 663
Target Start/End: Original strand, 31207845 - 31207885
Alignment:
Q  623 ggtaataatttgagaaaatgaattaattgaatgtaactaca 663  Q
    |||||| ||||||||||||||  ||||||||||||||||||    
T  31207845 ggtaattatttgagaaaatgacataattgaatgtaactaca 31207885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 622 - 658
Target Start/End: Original strand, 36301998 - 36302034
Alignment:
Q  622 cggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  36301998 cggtaataatgtgagaaaataaattaattgaatgtaa 36302034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 624 - 668
Target Start/End: Complemental strand, 41036820 - 41036776
Alignment:
Q  624 gtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 668  Q
    ||||||||||||||||||||  || ||||||||||| ||||||||    
T  41036820 gtaataatttgagaaaatgatatagttgaatgtaaccacacgtgt 41036776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 593 - 641
Target Start/End: Complemental strand, 55108317 - 55108269
Alignment:
Q  593 acacgacactacgacactgacaatgacaccggtaataatttgagaaaat 641  Q
    |||||||||||  | | |||||||||||||||||||||||||| |||||    
T  55108317 acacgacactaatatattgacaatgacaccggtaataatttgataaaat 55108269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 622 - 665
Target Start/End: Complemental strand, 26698236 - 26698193
Alignment:
Q  622 cggtaataatttgagaaaatgaattaattgaatgtaactacacg 665  Q
    |||||||||| |||||||||||||||||||||||||| ||||||    
T  26698236 cggtaataatctgagaaaatgaattaattgaatgtaattacacg 26698193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 611 - 658
Target Start/End: Original strand, 29230059 - 29230106
Alignment:
Q  611 gacaatgacaccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||| ||||||||||||||||||||||||||||  |||||||||||||    
T  29230059 gacattgacaccggtaataatttgagaaaatgacataattgaatgtaa 29230106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 624 - 658
Target Start/End: Original strand, 48317604 - 48317638
Alignment:
Q  624 gtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    ||||||||||||||||||||| |||||||||||||    
T  48317604 gtaataatttgagaaaatgaaataattgaatgtaa 48317638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 658
Target Start/End: Complemental strand, 1118455 - 1118414
Alignment:
Q  617 gacaccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    ||||| ||| ||||||||| ||||||||||||||||||||||    
T  1118455 gacacgggtgataatttgaaaaaatgaattaattgaatgtaa 1118414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 624 - 657
Target Start/End: Complemental strand, 4769360 - 4769327
Alignment:
Q  624 gtaataatttgagaaaatgaattaattgaatgta 657  Q
    |||||||||||||||||||| |||||||||||||    
T  4769360 gtaataatttgagaaaatgagttaattgaatgta 4769327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 618 - 655
Target Start/End: Complemental strand, 6440907 - 6440870
Alignment:
Q  618 acaccggtaataatttgagaaaatgaattaattgaatg 655  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  6440907 acactggtaataatttgagaaaatgaatttattgaatg 6440870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 617 - 663
Target Start/End: Complemental strand, 11781622 - 11781576
Alignment:
Q  617 gacaccggtaataatttgagaaaatgaattaattgaatgtaactaca 663  Q
    |||||| ||||||||||||||||||||| || |||||||||||||||    
T  11781622 gacaccagtaataatttgagaaaatgaaatatttgaatgtaactaca 11781576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 618 - 658
Target Start/End: Complemental strand, 14268791 - 14268751
Alignment:
Q  618 acaccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||||||||||||||||||||||||| ||||||||| ||||    
T  14268791 acaccggtaataatttgagaaaatgacttaattgaacgtaa 14268751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 658
Target Start/End: Complemental strand, 13252358 - 13252319
Alignment:
Q  619 caccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    ||||||||||||| ||||||||||||||| ||||||||||    
T  13252358 caccggtaataatgtgagaaaatgaattagttgaatgtaa 13252319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 617 - 659
Target Start/End: Original strand, 6736490 - 6736532
Alignment:
Q  617 gacaccggtaataatttgagaaaatgaattaattgaatgtaac 659  Q
    |||||||||||||||||||||| ||| | ||||||||||||||    
T  6736490 gacaccggtaataatttgagaatatggaataattgaatgtaac 6736532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 616 - 658
Target Start/End: Complemental strand, 8765461 - 8765419
Alignment:
Q  616 tgacaccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||||||||| ||||||| |||||| |||||||||||||||||    
T  8765461 tgacaccggtgataatttaagaaaacgaattaattgaatgtaa 8765419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 616 - 658
Target Start/End: Original strand, 28341323 - 28341365
Alignment:
Q  616 tgacaccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||| ||||||||| |||||||||||||||||||| |||||||    
T  28341323 tgacgccggtaatagtttgagaaaatgaattaattaaatgtaa 28341365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 682
Target Start/End: Original strand, 30563417 - 30563474
Alignment:
Q  625 taataatttgagaaaatgaattaattgaatgtaactacacgtgttatgttggtgtcag 682  Q
    |||||||||||||||||||  ||||| |||||||||| | ||||| ||| ||||||||    
T  30563417 taataatttgagaaaatgacataattcaatgtaactataggtgttgtgtcggtgtcag 30563474  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 618 - 670
Target Start/End: Original strand, 31095144 - 31095197
Alignment:
Q  618 acaccggtaataatttgagaaaat-gaattaattgaatgtaactacacgtgtta 670  Q
    |||| ||||||||||||||||||| ||| ||||||||| |||||||| ||||||    
T  31095144 acactggtaataatttgagaaaatggaagtaattgaatataactacatgtgtta 31095197  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 618 - 658
Target Start/End: Original strand, 34687007 - 34687048
Alignment:
Q  618 acaccggtaataatttgagaaaatga-attaattgaatgtaa 658  Q
    |||||||||||||||||||||||||| |||||||||| ||||    
T  34687007 acaccggtaataatttgagaaaatgatattaattgaaagtaa 34687048  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 618 - 658
Target Start/End: Original strand, 34709419 - 34709460
Alignment:
Q  618 acaccggtaataatttgagaaaatga-attaattgaatgtaa 658  Q
    |||||||||||||||||||||||||| |||||||||| ||||    
T  34709419 acaccggtaataatttgagaaaatgatattaattgaaagtaa 34709460  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 623 - 668
Target Start/End: Original strand, 39459790 - 39459835
Alignment:
Q  623 ggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 668  Q
    ||||||||||| || |||||||||||||||||||||  ||||||||    
T  39459790 ggtaataatttaaggaaatgaattaattgaatgtaatcacacgtgt 39459835  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 626 - 658
Target Start/End: Complemental strand, 17427359 - 17427327
Alignment:
Q  626 aataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||||||||||||||||||||||||||| ||||    
T  17427359 aataatttgagaaaatgaattaattgaaggtaa 17427327  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 618 - 658
Target Start/End: Complemental strand, 42043255 - 42043215
Alignment:
Q  618 acaccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||||| ||||||||| | ||||||||||||||||||||||    
T  42043255 acaccgataataatttaataaaatgaattaattgaatgtaa 42043215  T

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Target: scaffold0147 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 616 - 669
Target Start/End: Complemental strand, 37723 - 37670
Alignment:
Q  616 tgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgtt 669  Q
    ||||||||||||||| | ||||||||||| ||||||||||||| || |||||||    
T  37723 tgacaccggtaataaatggagaaaatgaaataattgaatgtaattatacgtgtt 37670  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 595 - 658
Target Start/End: Original strand, 18750852 - 18750917
Alignment:
Q  595 acgacactacgacactgaca-at-gacaccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||||||||||||||||||| || |||| |||||||||||| |||||||||  |||||||||||||    
T  18750852 acgacactacgacactgacacatcgacaacggtaataatttaagaaaatgacataattgaatgtaa 18750917  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 617 - 658
Target Start/End: Original strand, 28266474 - 28266515
Alignment:
Q  617 gacaccggtaataatttgagaaaatgaattaattgaatgtaa 658  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  28266474 gacaccggtaataatttgagaaaataaattaattggatgtaa 28266515  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 617 - 653
Target Start/End: Complemental strand, 31020750 - 31020714
Alignment:
Q  617 gacaccggtaataatttgagaaaatgaattaattgaa 653  Q
    ||||||||||| |||||||||||||||||||||||||    
T  31020750 gacaccggtaacaatttgagaaaatgaattaattgaa 31020714  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 654
Target Start/End: Original strand, 40826513 - 40826552
Alignment:
Q  615 atgacaccggtaataatttgagaaaatgaattaattgaat 654  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  40826513 atgacactggtgataatttgagaaaatgaattaattgaat 40826552  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 655
Target Start/End: Complemental strand, 7139494 - 7139462
Alignment:
Q  623 ggtaataatttgagaaaatgaattaattgaatg 655  Q
    ||||||| |||||||||||||||||||||||||    
T  7139494 ggtaatattttgagaaaatgaattaattgaatg 7139462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 617 - 657
Target Start/End: Original strand, 13803668 - 13803708
Alignment:
Q  617 gacaccggtaataatttgagaaaatgaattaattgaatgta 657  Q
    ||||| |||||||||||||||||||||| ||||||| ||||    
T  13803668 gacacaggtaataatttgagaaaatgaaataattgagtgta 13803708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 624 - 652
Target Start/End: Original strand, 13859528 - 13859556
Alignment:
Q  624 gtaataatttgagaaaatgaattaattga 652  Q
    |||||||||||||||||||||||||||||    
T  13859528 gtaataatttgagaaaatgaattaattga 13859556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 616 - 668
Target Start/End: Original strand, 22371078 - 22371130
Alignment:
Q  616 tgacaccggtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 668  Q
    |||||| |||| |||| |||||||| ||| |||||||||||||||||| ||||    
T  22371078 tgacactggtattaatatgagaaaaggaaataattgaatgtaactacatgtgt 22371130  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 627 - 658
Target Start/End: Original strand, 28322251 - 28322282
Alignment:
Q  627 ataatttgagaaaatgaattaattgaatgtaa 658  Q
    ||||||||||||||||||||||||||||||||    
T  28322251 ataatttgagaaaatgaattaattgaatgtaa 28322282  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 625 - 658
Target Start/End: Complemental strand, 9878083 - 9878050
Alignment:
Q  625 taataatttgagaaaatgaattaattgaatgtaa 658  Q
    |||||||||||||| |||||||||||||||||||    
T  9878083 taataatttgagaatatgaattaattgaatgtaa 9878050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 624 - 669
Target Start/End: Original strand, 39828473 - 39828518
Alignment:
Q  624 gtaataatttgagaaaatgaattaattgaatgtaactacacgtgtt 669  Q
    ||||||||||||||| ||||| |||||||||||||| ||| |||||    
T  39828473 gtaataatttgagaatatgaaataattgaatgtaaccacatgtgtt 39828518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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