View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2880R-Insertion-20 (Length: 500)
Name: NF2880R-Insertion-20
Description: NF2880R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880R-Insertion-20 |
 | |
|
| [»] chr5 (7 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 40 - 500
Target Start/End: Original strand, 2019223 - 2019687
Alignment:
| Q |
40 |
caatcccacatttcacaatctaatccacacggacattacacttgagttgatttcttgcgatgtcatgtggaactggtttgcgcaagttctccagaattgt |
139 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2019223 |
caatcccacatttcacaatctaatccacatggacattacacttgagttgatttcttgcgatgtcatgtggaactggtttgcgcaagttctccagaattgt |
2019322 |
T |
|
| Q |
140 |
cccaatcttcaaaatcttactgttcaaaaggtttgtttaatttgcttttggtcatcttgtattttaaacataatctcccatattttatttttgactaaaa |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2019323 |
cccaatcttcaaaatcttactgttcaaaaggtttgtttaatttgcttttggtcatcctgtattttaaacataatctcccatattttatttttgactaaaa |
2019422 |
T |
|
| Q |
240 |
taaaattgtgtgt----tgcacgcagaaatacgcatgtgtnnnnnnncatggcaacgatgtgcattggaaggatccacaaattattccacaatgtctttc |
335 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2019423 |
taaaattgtgtgtgtattgcacacagaaatacgcatgtgtaaaaaaacatggcaacgatgtgcattggaaggatccacaaattattccacaatgtctttc |
2019522 |
T |
|
| Q |
336 |
atcacgacttaaaacgtttaagttcaaatcgttcaacggttttgattgtgaggttcaatttgctaagtatatcatgcagaattctaaagtacttcaaaat |
435 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2019523 |
atcacgacttaaaacgtttaagttcaaatcgttcaacgactttgattgtgaggttcaatttgctaagtatatcatgcagaattctaaagtacttcaaaat |
2019622 |
T |
|
| Q |
436 |
atgacaattcacacgactttagacattgatctaaagcatccaatgttggaaacattatctttgtg |
500 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2019623 |
atgacaattcacacaactttagacattgatctaaagcatccaatgttggaaacattatctttgtg |
2019687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 298 - 449
Target Start/End: Original strand, 2006553 - 2006707
Alignment:
| Q |
298 |
cattggaaggatccacaaa---ttattccacaatgtctttcatcacgacttaaaacgtttaagttcaaatcgttcaacggttttgattgtgaggttcaat |
394 |
Q |
| |
|
||||||||||||| ||||| || ||||| ||||||||||||||| | ||| |||||| ||||||||||| | |||||| |||| |||||||||||||| |
|
|
| T |
2006553 |
cattggaaggatcaacaaactgttgttccagaatgtctttcatcacaaattagaacgttcaagttcaaatcatacaacggctttggttgtgaggttcaat |
2006652 |
T |
|
| Q |
395 |
ttgctaagtatatcatgcagaattctaaagtacttcaaaatatgacaattcacac |
449 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
2006653 |
ttgctaaatatatcatgcaaaattcaaaagtactgcaaaatatgacaatgcacac |
2006707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 383 - 488
Target Start/End: Original strand, 2016040 - 2016145
Alignment:
| Q |
383 |
gtgaggttcaatttgctaagtatatcatgcagaattctaaagtacttcaaaatatgacaattcacacgactttagacattgatctaaagcatccaatgtt |
482 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||| ||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
2016040 |
gtgaggttcagtttgctaaatatattttgcagacttcaaaagtactacaaaatatgacaattcacacaactttagacattgatctaaagcagccaatgtt |
2016139 |
T |
|
| Q |
483 |
ggaaac |
488 |
Q |
| |
|
|||||| |
|
|
| T |
2016140 |
ggaaac |
2016145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 381 - 500
Target Start/End: Original strand, 2012860 - 2012979
Alignment:
| Q |
381 |
ttgtgaggttcaatttgctaagtatatcatgcagaattctaaagtacttcaaaatatgacaattcacacgactttagacattgatctaaagcatccaatg |
480 |
Q |
| |
|
|||||||| |||||||||||| || || |||||||| || |||||||| ||||||||||||||||| | |||||| ||||||||| | ||||||||||| |
|
|
| T |
2012860 |
ttgtgaggctcaatttgctaaatacattatgcagaagtcaaaagtactacaaaatatgacaattcagagtactttaaacattgatccagagcatccaatg |
2012959 |
T |
|
| Q |
481 |
ttggaaacattatctttgtg |
500 |
Q |
| |
|
|||||||| || |||||||| |
|
|
| T |
2012960 |
ttggaaactttctctttgtg |
2012979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 298 - 488
Target Start/End: Original strand, 2014189 - 2014376
Alignment:
| Q |
298 |
cattggaaggatccacaaattattccacaatgtctttcatcacgacttaaaacgtttaagttcaaatcgttcaacggttttgattgtgaggttcaatttg |
397 |
Q |
| |
|
|||||||| |||| ||| ||| ||||| ||||||||||| ||| |||| ||| |||| |||||| | ||| || || |||||||||||||||| |
|
|
| T |
2014189 |
cattggaatgatcaacatattgttccagaatgtctttcaacacagcttagaacatttacactcaaatattacaaaggcttcaattgtgaggttcaattca |
2014288 |
T |
|
| Q |
398 |
ctaagtatatcatgcagaattctaaagtacttcaaaatatgacaattcacacgactttagacattgatctaaagcatccaatgttggaaac |
488 |
Q |
| |
|
| || || || |||||||| || |||||||| |||||||||||||||||||| |||||||||||||| ||| |||||||||||||||| |
|
|
| T |
2014289 |
caaaatacattatgcagaactcgaaagtactacaaaatatgacaattcacactgctttagacattgat---aagtatccaatgttggaaac |
2014376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 2006358 - 2006418
Alignment:
| Q |
99 |
atgtcatgtggaactggtttgcgcaagttctccagaattgtcccaatcttcaaaatcttac |
159 |
Q |
| |
|
|||||||||||||||||||||| ||| | ||||| ||||||||||| |||||||||||||| |
|
|
| T |
2006358 |
atgtcatgtggaactggtttgcacaaatgctccacaattgtcccaagcttcaaaatcttac |
2006418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 2013990 - 2014050
Alignment:
| Q |
99 |
atgtcatgtggaactggtttgcgcaagttctccagaattgtcccaatcttcaaaatcttac |
159 |
Q |
| |
|
||||||||||||||||||| || ||| | ||||| | ||||||||| |||||||||||||| |
|
|
| T |
2013990 |
atgtcatgtggaactggttcgctcaactgctccacagttgtcccaagcttcaaaatcttac |
2014050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University