View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2880R-Insertion-4 (Length: 150)

Name: NF2880R-Insertion-4
Description: NF2880R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2880R-Insertion-4
NF2880R-Insertion-4
[»] chr4 (2 HSPs)
chr4 (7-150)||(6743980-6744123)
chr4 (9-150)||(28021951-28022090)
[»] chr7 (3 HSPs)
chr7 (7-141)||(4411466-4411594)
chr7 (57-147)||(27964648-27964737)
chr7 (43-105)||(42302835-42302897)
[»] chr6 (2 HSPs)
chr6 (10-86)||(13154370-13154446)
chr6 (10-86)||(13159226-13159302)
[»] chr8 (3 HSPs)
chr8 (9-150)||(43720525-43720664)
chr8 (9-89)||(36243551-36243630)
chr8 (57-147)||(14836952-14837041)
[»] chr3 (1 HSPs)
chr3 (15-89)||(14956649-14956723)
[»] chr2 (1 HSPs)
chr2 (57-147)||(32280555-32280644)
[»] chr5 (1 HSPs)
chr5 (43-94)||(2369072-2369123)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 3e-71; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 6743980 - 6744123
Alignment:
Q  7 catttacatctttgattgaatatctcattatatttcactttcaccactcttgttctttttgagttacaaatgtgtgttttagatttagactttaaaattt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6743980 catttacatctttgattgaatatctcattatatttcactttcaccactcatgttctttttgagttacaaatgtgtgttttagatttagactttaaaattt 6744079  T
Q  107 tctttgttcccgttacattcttgaatgaattcttttcttttatt 150  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  6744080 tctttgttgccgttacattcttgaatgaattcttttcttttatt 6744123  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 28021951 - 28022090
Alignment:
Q  9 tttacatctttgattgaatatctcattatatttcactttcaccactcttgttctttttgagttacaaatgtgtgttttagatttagactttaaaattttc 108  Q
    ||||||| |||||||||||  ||||||  |||| ||||| || |||| |  |||| ||| ||||||||||||  || ||||||||| ||||  |||| ||    
T  28021951 tttacatgtttgattgaatgcctcattggattttacttttacaactcat--tcttcttgggttacaaatgtgaattctagatttaggctttggaattgtc 28022048  T
Q  109 tttgttcccgttacattcttgaatgaattcttttcttttatt 150  Q
    |   || ||||||||||||| |||||||||||||||||||||    
T  28022049 tcaatttccgttacattcttcaatgaattcttttcttttatt 28022090  T

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Target: chr7 (Bit Score: 96; Significance: 2e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 7 - 141
Target Start/End: Original strand, 4411466 - 4411594
Alignment:
Q  7 catttacatctttgattgaatatctcattatatttcactttcaccactcttgttctttttgagttacaaatgtgtgttttagatttagactttaaaattt 106  Q
    ||||||||||||||||||||||||||||||||||||      ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  4411466 catttacatctttgattgaatatctcattatatttc------accactcatgttctttttgggttacaaatgtgtgttttagatttagactttaaaattt 4411559  T
Q  107 tctttgttcccgttacattcttgaatgaattcttt 141  Q
    |||||||| | ||||||||||||||||||||||||    
T  4411560 tctttgtttctgttacattcttgaatgaattcttt 4411594  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 27964737 - 27964648
Alignment:
Q  57 tgttctttttgagttacaaatgtgtgttttagatttagactttaaaattttctttgttcccgttacattcttgaatgaattcttttctttt 147  Q
    ||||||||||| ||| ||||||| ||||||||| |||| |||||||||| |||    |||  |||||||||||||||||||||||| ||||    
T  27964737 tgttctttttgggtttcaaatgt-tgttttagaattaggctttaaaattgtctccactccttttacattcttgaatgaattcttttatttt 27964648  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 42302897 - 42302835
Alignment:
Q  43 actttcaccactcttgttctttttgagttacaaatgtgtgttttagatttagactttaaaatt 105  Q
    ||||| || |||| ||||||||||| ||||||||||||||||||| |||||| |||| |||||    
T  42302897 acttttacaactcatgttctttttgggttacaaatgtgtgttttatatttaggctttgaaatt 42302835  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 13154446 - 13154370
Alignment:
Q  10 ttacatctttgattgaatatctcattatatttcactttcaccactcttgttctttttgagttacaaatgtgtgtttt 86  Q
    |||||| |||||||||||  ||||||  |||||||||||| | ||| ||||||||||| ||||||||||||||||||    
T  13154446 ttacatgtttgattgaatgcctcattggatttcactttcaacgctcatgttctttttgtgttacaaatgtgtgtttt 13154370  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 13159302 - 13159226
Alignment:
Q  10 ttacatctttgattgaatatctcattatatttcactttcaccactcttgttctttttgagttacaaatgtgtgtttt 86  Q
    |||||| |||||||||||  ||||||  |||||||||||| | ||| ||||||||||| ||||||||||||||||||    
T  13159302 ttacatgtttgattgaatgcctcattggatttcactttcaacgctcatgttctttttgtgttacaaatgtgtgtttt 13159226  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 43720525 - 43720664
Alignment:
Q  9 tttacatctttgattgaatatctcattatatttcactttcaccactcttgttctttttgagttacaaatgtgtgttttagatttagactttaaaattttc 108  Q
    ||||||| |||||||||||  ||||||  |||| ||||| || |||| |  |||| ||| |||||||||||| ||| ||||||||| ||||  |||| ||    
T  43720525 tttacatgtttgattgaatgcctcattggattttacttttacaactcat--tcttcttgggttacaaatgtgagttctagatttaggctttggaattgtc 43720622  T
Q  109 tttgttcccgttacattcttgaatgaattcttttcttttatt 150  Q
    |   || ||| ||||||||| |||||||||||||||||||||    
T  43720623 tcaatttccgctacattcttcaatgaattcttttcttttatt 43720664  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 9 - 89
Target Start/End: Complemental strand, 36243630 - 36243551
Alignment:
Q  9 tttacatctttgattgaatatctcattatatttcactttcaccactcttgttctttttgagttacaaatgtgtgttttaga 89  Q
    ||||||| |||||||||||  ||||||  |||||||||||| ||||| ||  ||||| | |||||||||||||||||||||    
T  36243630 tttacatgtttgattgaatgcctcattg-atttcactttcaacactcatgcccttttcgtgttacaaatgtgtgttttaga 36243551  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 14836952 - 14837041
Alignment:
Q  57 tgttctttttgagttacaaatgtgtgttttagatttagactttaaaattttctttgttcccgttacattcttgaatgaattcttttctttt 147  Q
    ||||||||||| ||| ||||||| ||||||||| |||| |||||||||| |||    |||  |||||||||| ||||||||||||| ||||    
T  14836952 tgttctttttgggtttcaaatgt-tgttttagaattaggctttaaaattgtctccactccttttacattcttcaatgaattcttttatttt 14837041  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 14956723 - 14956649
Alignment:
Q  15 tctttgattgaatatctcattatatttcactttcaccactcttgttctttttgagttacaaatgtgtgttttaga 89  Q
    ||||||||||||| |||||||   ||||||||||| ||||| ||  ||||||| |||||||||||||||||||||    
T  14956723 tctttgattgaatgtctcattgattttcactttcaacactcatgccctttttgcgttacaaatgtgtgttttaga 14956649  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 32280555 - 32280644
Alignment:
Q  57 tgttctttttgagttacaaatgtgtgttttagatttagactttaaaattttctttgttcccgttacattcttgaatgaattcttttctttt 147  Q
    ||||||||||| ||||||||||| ||||||||| |||| |||||||||| |||    |||  |||||||||| ||||||||||||| ||||    
T  32280555 tgttctttttgggttacaaatgt-tgttttagaattaggctttaaaattgtctccactccttttacattcttcaatgaattcttttatttt 32280644  T

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Target: chr5 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 2369123 - 2369072
Alignment:
Q  43 actttcaccactcttgttctttttgagttacaaatgtgtgttttagatttag 94  Q
    ||||| || |||| ||||||||||| |||||||||||| |||||| ||||||    
T  2369123 acttttacaactcatgttctttttgggttacaaatgtgcgttttatatttag 2369072  T

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