View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2880R-Insertion-5 (Length: 109)

Name: NF2880R-Insertion-5
Description: NF2880R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2880R-Insertion-5
NF2880R-Insertion-5
[»] chr1 (1 HSPs)
chr1 (8-97)||(43974482-43974571)
[»] chr7 (1 HSPs)
chr7 (8-103)||(43564031-43564126)
[»] chr8 (1 HSPs)
chr8 (8-99)||(36431986-36432077)


Alignment Details
Target: chr1 (Bit Score: 66; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 1e-29
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 43974571 - 43974482
Alignment:
Q  8 actttgttctccaccaaagagatcatcaatttcttttatcagttttttgatctttgactcaatctcagccaaatcagaactcttagataa 97  Q
    ||||||||||||||||||||||||||| |||||| |||| | ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  43974571 actttgttctccaccaaagagatcatctatttctcttattacttttttgatatttgactcaatctctgccaaatcagaactcttagataa 43974482  T

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Target: chr7 (Bit Score: 64; Significance: 2e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 8 - 103
Target Start/End: Original strand, 43564031 - 43564126
Alignment:
Q  8 actttgttctccaccaaagagatcatcaatttcttttatcagttttttgatctttgactcaatctcagccaaatcagaactcttagataaaattgc 103  Q
    ||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||| ||||||||||||||||| | |||| |||||||    
T  43564031 actttgttctccaccaaagagatcatcaatttcttttattaatttctcgatctttgactcaatttcagccaaatcagaactttcagatgaaattgc 43564126  T

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Target: chr8 (Bit Score: 60; Significance: 4e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 36431986 - 36432077
Alignment:
Q  8 actttgttctccaccaaagagatcatcaatttcttttatcagttttttgatctttgactcaatctcagccaaatcagaactcttagataaaa 99  Q
    ||||| |||||||||||||||||||||||||||||| |  | ||  |||||||||||||||||||||||||||||||||||||| |||||||    
T  36431986 actttcttctccaccaaagagatcatcaatttctttgactaattgcttgatctttgactcaatctcagccaaatcagaactcttggataaaa 36432077  T

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