View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880R-Insertion-8 (Length: 1080)
Name: NF2880R-Insertion-8
Description: NF2880R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880R-Insertion-8 |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 27 - 540
Target Start/End: Complemental strand, 29260723 - 29260228
Alignment:
| Q |
27 |
tcaataaagatattcaaacaaaaactccgttgaaagtgttctctgactactttactatcttacaggtttgatggtattatgattataattacacaaaaca |
126 |
Q |
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| T |
29260723 |
tcaataaagatattcaaacaaaaactccgttgaaagtgttctctgactactttactgtcttacaggtttgatggt--------------tacacaaaaca |
29260638 |
T |
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| Q |
127 |
attaaacagctacgtagctgaagtgaaagaaaataaaaaggtgtggtatatattnnnnnnnttattcatatgtttgttagccatatgaatttcaaataat |
226 |
Q |
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| T |
29260637 |
attaaacagctacgtagctgaagtgaaagaaaataaaaaggtgtggtatatattaaaaaaattattaatatgtt----agccatatgaatttcaaataat |
29260542 |
T |
|
| Q |
227 |
ctttaaccaaagagaatgagaaaatcctgcaaattaagaaagtagatcagtaacttaactatagagaaaatgaacaaaatgaagtattaattattcaaat |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||| |
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| T |
29260541 |
ctttaaccaaagagaatgagaaaatcctgcaaattaagaaagtagatcagtaacttaactatggggaaaatcaacaaaatgaagtattaattattcaaat |
29260442 |
T |
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| Q |
327 |
gaaccctctcctttctcattgatttatttctctgggtttaaaatgcaaacagagactaggcatatactattaatagaagatgccagctagtcacacaaca |
426 |
Q |
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| T |
29260441 |
gaaccctttcctttctcattgatttatttctctgggtttaaaatgcaaacagagactaggcatatactattaatagaagatgccagttagtcacacaaca |
29260342 |
T |
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| Q |
427 |
atgcaagtaattaagtgcaatgatactttggtgggtgcatactagttacacgtcaaagccctaaaagttcaaagattagaatggtttggttttgaaagag |
526 |
Q |
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| T |
29260341 |
atgcaagtaattaagtgcaatgatactttggtgggtgcatactagttacacgtcaaagccctaaaagttcaaagattagaatggtttggttttgaaagag |
29260242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 658 - 944
Target Start/End: Complemental strand, 29260032 - 29259746
Alignment:
| Q |
658 |
aattttcttatttagtgcgatcaataaaatggattatcaaattgatacggcaaaacaaagtgtatacattacatggtcccactgtaagttttta-tctat |
756 |
Q |
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||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| |
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| T |
29260032 |
aattttcttatttcgtgcgatcaataaagtg-attatcaaattgatacggcaaaacaaagtgtatgcattacatggtcccactataagtttttaatctat |
29259934 |
T |
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| Q |
757 |
ccaccgtatgtttattacatagacatgaagaagggttacacatttatggctgctacttaccatctgtcatgatcaattaatacattcctctttttctctc |
856 |
Q |
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| T |
29259933 |
ccaccgtatgtttattacatagacatgaagaagggttaca--tttatggctgctacttaccatctgtcatgatcaattaatacatttctctttttctctc |
29259836 |
T |
|
| Q |
857 |
aaaaaat-aatacatttctcttttgcaacttaattattaatg-ttgaccatataaatgtattcaaaatggagtacaaagtattaaataga |
944 |
Q |
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| T |
29259835 |
aaaaaataaatacatttctcttttgcaacttaattattaatgtttgaccatataaatgtattcaaaatgaagtacaaagtattaaataga |
29259746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 546 - 600
Target Start/End: Complemental strand, 29260134 - 29260080
Alignment:
| Q |
546 |
ttaactctagctgatatttttaagatagaacaatcaccttttaaattggttcaac |
600 |
Q |
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| T |
29260134 |
ttaactctcgttgatatttttaagatggatcaatcactttttaaattggttcaac |
29260080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 490 - 540
Target Start/End: Complemental strand, 7209054 - 7209004
Alignment:
| Q |
490 |
aaagttcaaagattagaatggtttggttttgaaagagttgaaaattttcca |
540 |
Q |
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| T |
7209054 |
aaagttcaaagctaagaatggtttggttttgaaagagatgaaaattttcca |
7209004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 631 - 669
Target Start/End: Original strand, 9945693 - 9945731
Alignment:
| Q |
631 |
atgaacaattttaaaaagaagtagagtaattttcttatt |
669 |
Q |
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| T |
9945693 |
atgaacaattttaaaaaggagtagagtaattatcttatt |
9945731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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