View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880R-Insertion-9 (Length: 1036)
Name: NF2880R-Insertion-9
Description: NF2880R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880R-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 940; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 940; E-Value: 0
Query Start/End: Original strand, 20 - 1024
Target Start/End: Original strand, 29303398 - 29304401
Alignment:
| Q |
20 |
aagtatccgttaataaataccgttctgatgacgcaattataagtatccaggcaagagttacaaactgagtatctgatatctcgtataatccgttagattt |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29303398 |
aagtatccgttaataaataccgttctgatgacgcgattataagtatccaggcaagagttacaaactgagtatctgatatctcgtataatccgttagattt |
29303497 |
T |
|
| Q |
120 |
taatttgttaaatattactgattgataagtgaaagtccacatagaatgaaattatttaaactcgggggtgtcattaaaatttaggcttttgtaagagaaa |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29303498 |
taatttgttaaatattactgattgataagtgaaagtccacatagaatgaaattatttaaactcgggggtgtcattaaaatttaggcttgtgtaagagaaa |
29303597 |
T |
|
| Q |
220 |
ctaaaatacaaatgcaaaacttcatctgcataaagctacacacacatgcatcatgacatacatttatgacaattaaggttttaagaaatgccctgcaact |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29303598 |
ctaaaatacaaatgcaaaacttcatctgcataaagctacacacacatgcatcatgacatacatttatgacaattaaggttttaagaaatgccctgcaact |
29303697 |
T |
|
| Q |
320 |
gtatttgcggccgcaatgtaattgttttccttgttcctacagccacattgcaagtctgcaatttttcataatattacggatcacgacgcaatacgaatac |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29303698 |
gtatttgcggccgcaatgtaattgttttccttgttcctacagccacattgcaagtctgcaatttttcataatattacggatcacgacgcaatacgactac |
29303797 |
T |
|
| Q |
420 |
agacctgattcaaatccttgatcgcgatttaccctagcttgcatgataacaaaaatgaaggg-aaaaagaaaagcacagtgcctgtctagaaacacatac |
518 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
29303798 |
agacctgattcaaatccttgatcgcgatttaccctagctcgcatgataacaaaaatgaagggaaaaaaaaaaagcacagtgcctgtctagaaacacatac |
29303897 |
T |
|
| Q |
519 |
atgcttctcgaaacaatgtactacatagtacacagaaaaattacatgacatgacatgacatgattgctttttctacaaggtaatgcatcatcgaaaaaac |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29303898 |
atgcttctcgaaacaatgtactacatagtacac--aaaaattacatgacatgacatgacatgattgctttttctacaaggtaatgcatcatcgaaaaaac |
29303995 |
T |
|
| Q |
619 |
aattgagagttcaaagctcattcaatatcatatgtcatatagatacatacccctttgaagtttatctctgcaatccaaccaatggtaaatattgctgcat |
718 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29303996 |
aattgagagttcaaagctcattcaatatcatatgtcatatagatacatacccctttgaagtttatctctgcaatccaaccaatggtaaatattgctgcat |
29304095 |
T |
|
| Q |
719 |
gacgaagcttccaatcaagatttgatgcataattcattgttattgtctcaattgccatgggaacaaacacaccttgatccccatcaaaacagagtgcatt |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29304096 |
gacgaagcttccaatcaagatttgatgcataattcattgttattgtctcaattgccatgggaacaaacacaccttgatccccatcaaaacagagtgcatt |
29304195 |
T |
|
| Q |
819 |
gcacaagaagaccccacgataataagcatctgccattccagcagtaagacgattctcatggtccacatcataccaaagaggatcatcaacaatacacgac |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29304196 |
gcacaagaagaccccacgataataagcatctgccattccagcagtaagacgattctcatggtccacatcataccaaagaggatcatcaacaatacacgac |
29304295 |
T |
|
| Q |
919 |
aacatgtttatggcaactaccaggactctcttcaattcctcacgagaaagactggtgatcacatt-ccatcatagaggtctttgataaacattaaacgat |
1017 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||| ||| |
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| T |
29304296 |
aacatgtttatggcaactacaaggactctcttcaattcctcacgagaaagattggtgatcacattcccatcatagaggtctttgat-aacattaaaagat |
29304394 |
T |
|
| Q |
1018 |
acaatct |
1024 |
Q |
| |
|
||||||| |
|
|
| T |
29304395 |
acaatct |
29304401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 520 - 926
Target Start/End: Original strand, 29321070 - 29321471
Alignment:
| Q |
520 |
tgcttctcgaaacaatgtactacatagtacacagaaaaattacatgacatgacatgacatgattgctttttctacaaggtaatgcatcatcgaaaaaaca |
619 |
Q |
| |
|
||||||| ||||||||| ||||| |||||||||||||||||| ||||||| ||||| |||||| |||||||||||||||| | |||||| |
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|
| T |
29321070 |
tgcttctgaaaacaatgttctacagagtacacagaaaaattacttgacatggcatga-----------tttctataaggtaatgcatcatcaagaaaaca |
29321158 |
T |
|
| Q |
620 |
attgagagttcaaagctcattcaatatcatatgtcatatagatacatac-------ccctttgaagtttatctctgcaatccaaccaatggtaaatattg |
712 |
Q |
| |
|
||||| || |||||| |||||||||||||| ||||||| || ||||| |||||||| ||| ||||||||||||||| ||||| || |||| |
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| T |
29321159 |
cttgagc-ttaaaagcttattcaatatcatatatcatatatatgcatacataccttccctttgatgttactctctgcaatccaactaatggcaagcattg |
29321257 |
T |
|
| Q |
713 |
ctgcatgacgaagcttccaatcaagatttgatgcataattcattgttattgtctcaattgccatgggaacaaacacaccttgatccccatcaaaacagag |
812 |
Q |
| |
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||||| ||| | | ||||| || || ||| |||| | |||||| || ||||||||||| |||||||||| ||| ||| || |||||| | ||| |
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|
| T |
29321258 |
ctgcacaacggaaccaccaataaacatgagatacatattgcattgtcatcatctcaattgccgtgggaacaaaaacatcttcatgcccatctgtagtgag |
29321357 |
T |
|
| Q |
813 |
tgcattgcacaagaagaccccacgataataagcatctgccattccagcagtaagacgattctcatggtccacatcataccaaagaggatcatcaacaata |
912 |
Q |
| |
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| ||| |||||||||||||| | || |||||||| ||| |||||||||| || ||||| || || ||||||||||||||||||||||||| || | |
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| T |
29321358 |
cgatttgaacaagaagaccccaaggtagaaagcatctaacatcccagcagtaatacaattcttatcatcaacatcataccaaagaggatcatcaataaca |
29321457 |
T |
|
| Q |
913 |
cacgacaacatgtt |
926 |
Q |
| |
|
|||||||||||||| |
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|
| T |
29321458 |
cacgacaacatgtt |
29321471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 24 - 259
Target Start/End: Original strand, 29320745 - 29320962
Alignment:
| Q |
24 |
atccgttaataaataccgttctgatgacgcaattataagtatccaggcaagagttacaaactgagtatctgatatctcgtataatccgttagattttaat |
123 |
Q |
| |
|
|||| |||||||||||| |||| || || ||| || ||||| ||| || |||||||| | |||||||||||| || ||||||| |||||||||||| |
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|
| T |
29320745 |
atccattaataaataccattctaataacacaaatacaagtaaccaacaaacagttacaagccgagtatctgataacttacataatccattagattttaat |
29320844 |
T |
|
| Q |
124 |
ttgttaaatattactgattgataagtgaaagtccacatagaatgaaattatttaaactcgggggtgtcattaaaatttaggcttttgtaagagaaactaa |
223 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||| ||||||| || |||||||||||| || |
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|
| T |
29320845 |
ttgttaaatattattgattgataagtgaaagtccac------------------aactcggtggtgtcattaagatttaggtttctgtaagagaaaccaa |
29320926 |
T |
|
| Q |
224 |
aatacaaatgcaaaacttcatctgcataaagctaca |
259 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| |||| |
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|
| T |
29320927 |
aatacaaatgcacaacttaatctgcataaagttaca |
29320962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 29331822 - 29331957
Alignment:
| Q |
102 |
gtataatccgttagattttaatttgttaaatattactgattgataagtgaaagtccacatagaatgaaattatttaaactcgggggtgtcattaaaattt |
201 |
Q |
| |
|
||||||||| ||||| ||| |||||||||||| || |||||||| || |||||| | || | ||||| |||| |||||||| ||||||||||||||| |
|
|
| T |
29331822 |
gtataatccattagacttttatttgttaaatactattgattgatcagagaaagtttatatgggttgaaactattcaaactcggcagtgtcattaaaattt |
29331921 |
T |
|
| Q |
202 |
aggcttttgtaagagaaactaaaatacaaatgcaaa |
237 |
Q |
| |
|
|||| | |||||||||||| |||| |||||| |||| |
|
|
| T |
29331922 |
aggcctgtgtaagagaaaccaaaagacaaatacaaa |
29331957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 571 - 812
Target Start/End: Original strand, 29332306 - 29332548
Alignment:
| Q |
571 |
acatgacatgattgctttttctacaaggtaatgcatcatcgaaaaaacaattga-gagttcaaagctcattcaatatcatat-gtcatatagatacatac |
668 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||| | |||||| || | | || |||||||||| |||||||||| | |||| |||| | |
|
|
| T |
29332306 |
acatgacatgattgctctttctacaaggtaatgcatgatcaagaaaacactttatggatttaaagctcattgaatatcatatcgaattatacatac-cat |
29332404 |
T |
|
| Q |
669 |
ccctttgaagtttatctctgcaatccaaccaatggtaaatattgctgcatgacgaagcttccaatcaagatttgatgcataattcattgttattgtctca |
768 |
Q |
| |
|
| | |||| |||| |||||||||| || |||||| || || ||||||||||| | | |||||||| ||| |||||||| ||| ||||||| || || |
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|
| T |
29332405 |
ctcgttgaggtttttctctgcaattgaagcaatggcaagcatagctgcatgacgtaaccgccaatcaacattcgatgcatatttcgttgttatcatccca |
29332504 |
T |
|
| Q |
769 |
attgccatgggaacaaacacaccttgatccccatcaaaacagag |
812 |
Q |
| |
|
||||| |||||||||||||| || ||||||||| ||| |||| |
|
|
| T |
29332505 |
attgcagtgggaacaaacacatattcatccccatctaaagagag |
29332548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 880 - 917
Target Start/End: Original strand, 29332616 - 29332653
Alignment:
| Q |
880 |
tccacatcataccaaagaggatcatcaacaatacacga |
917 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||| |
|
|
| T |
29332616 |
tccacatcataccaaagaggatcatcaataacacacga |
29332653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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