View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2880_high_11 (Length: 475)
Name: NF2880_high_11
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 227 - 459
Target Start/End: Original strand, 48635149 - 48635381
Alignment:
| Q |
227 |
atatatatatgataacattaaacttaaatatatatgtaattaattttatagttcagtcatctccttggatatacgaacagaggagcatggtggcacagcg |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48635149 |
atatatatatgataacattaaacttaaatatatatgtaattaattttatagttcagtcatctccttggatatacgaacagaggagcatggtggcacagcg |
48635248 |
T |
|
| Q |
327 |
gcgcaagatgtagagacgagcacgttgctccttaaccaaagaagtgcatttgttgctaaaaccaaatccctttctctttctaaggaccttagcatcatcc |
426 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48635249 |
gcgcaagatgtagagacgagcacgttgttccttaaccaaagaagtgcatttgttgctaaaaccaaatccctttctctttctaaggaccttagcatcatcc |
48635348 |
T |
|
| Q |
427 |
ataatcaatattgaaaactagtactgttcttca |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
48635349 |
ataatcaatattgaaaactagtactgttcttca |
48635381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 6 - 236
Target Start/End: Original strand, 48634912 - 48635130
Alignment:
| Q |
6 |
agcagcacagagggtatccataaaactctcctgtttgtcccctatctatctatctatattagaaagaaaagnnnnnnnccactggcttttggtagcccaa |
105 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
48634912 |
agcaacactgagggtatccataaaactctcctgtttgtcccctatctatctat----attagaaagaaaagaaaaaaaccacgggcttttggtagcccaa |
48635007 |
T |
|
| Q |
106 |
atgggtcnnnnnnnntaggggaaggaaggaaggaagtaaggagagactaattaaggtggcagcctgcagtgaagctcatacaacctaactgaacaaacaa |
205 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48635008 |
atgggtcaaaaaaaataggggaaggaaggaagg--------agagactaattaaggtggcagcctgcagtgaagctcatacaacctaactgaacaaacaa |
48635099 |
T |
|
| Q |
206 |
tcaaccagatagaaatggagaatatatatat |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
48635100 |
tcaaccagatagaaatggagaatatatatat |
48635130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 281 - 370
Target Start/End: Complemental strand, 8554893 - 8554804
Alignment:
| Q |
281 |
agtcatctccttggatatacgaacagaggagcatggtggcacagcggcgcaagatgtagagacgagcacgttgctccttaaccaaagaag |
370 |
Q |
| |
|
|||| |||||||| || ||| |||| || |||||||||||||| || || | ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8554893 |
agtcttctccttgaatgtaccaacaaagaagcatggtggcacaacgacgaacgatgtagagacgagctcgttgctccttaaccaaagaag |
8554804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University