View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2880_high_18 (Length: 436)

Name: NF2880_high_18
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2880_high_18
NF2880_high_18
[»] chr3 (6 HSPs)
chr3 (212-418)||(46920103-46920309)
chr3 (214-418)||(11031614-11031818)
chr3 (216-418)||(18319605-18319807)
chr3 (214-409)||(52126283-52126479)
chr3 (47-215)||(34705436-34705604)
chr3 (10-56)||(34704856-34704902)
[»] chr7 (2 HSPs)
chr7 (214-418)||(16849932-16850136)
chr7 (218-409)||(31738834-31739026)
[»] chr4 (6 HSPs)
chr4 (214-418)||(34967090-34967294)
chr4 (212-418)||(54207233-54207439)
chr4 (215-418)||(9117443-9117646)
chr4 (216-418)||(27742726-27742928)
chr4 (16-92)||(18978098-18978174)
chr4 (238-295)||(25476960-25477017)
[»] chr1 (2 HSPs)
chr1 (212-418)||(38006996-38007202)
chr1 (214-418)||(51083358-51083563)
[»] chr8 (2 HSPs)
chr8 (217-418)||(11465584-11465785)
chr8 (216-418)||(3428480-3428682)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 212 - 418
Target Start/End: Original strand, 46920103 - 46920309
Alignment:
212 taagggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatac 311  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
46920103 taagggggtgtttgtttccatgttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatac 46920202  T
312 ctgggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacat 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
46920203 ctgggaacaaattatacccaggaaaatttttaacccatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacat 46920302  T
412 ttgcctt 418  Q
    |||||||    
46920303 ttgcctt 46920309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 214 - 418
Target Start/End: Complemental strand, 11031818 - 11031614
Alignment:
214 agggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacct 313  Q
    ||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11031818 agggggtgtttgtttccaggttataaaatttatttctaggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacct 11031719  T
314 gggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacattt 413  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
11031718 gggaacaaattatacccaggaaaatttttaacccatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacattt 11031619  T
414 gcctt 418  Q
    |||||    
11031618 gcctt 11031614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 216 - 418
Target Start/End: Original strand, 18319605 - 18319807
Alignment:
216 ggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgg 315  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18319605 ggggtgtttgtttccaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgg 18319704  T
316 gaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttgc 415  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
18319705 gaacaaattatacccaggaaattttttaacccatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctagaaatgacatttgc 18319804  T
416 ctt 418  Q
    |||    
18319805 ctt 18319807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 214 - 409
Target Start/End: Complemental strand, 52126479 - 52126283
Alignment:
214 agggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacct 313  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
52126479 agggggtgtttgtttccaggttataaaatttattccttggaatatgaggatgggaatgcactttcccatgtttggtagaaggtacaagaaaaatatacct 52126380  T
314 gggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatg-ttttattcctaagaatgac 409  Q
    || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||    
52126379 ggaaacaaattatacccaggaaaatttttaacccatgatcttcccatttttattcccatgaaagaggagttggaatgtttttattcctaggaatgac 52126283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 47 - 215
Target Start/End: Original strand, 34705436 - 34705604
Alignment:
47 aatgcaactacaatagatttttggtggtaaatgatgtcaaaccaaagaaagccaaaacttaattacagattaagcactacaatgttcgtatattacaatc 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34705436 aatgcaactacaatagatttttggtggtaaatgatgtcaaaccaaagaaagccaaaacttaattacagattaagcactacaatgttcgtatattacaatc 34705535  T
147 agaaaccgtagagtaaatgacaattacacaaagatcattcaagcgtcaaaataaaccataaaacataag 215  Q
    ||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
34705536 agaaaccttagagtaaatgacaattacacaaggatcattcaagtgtcaaaataaaccataaaacataag 34705604  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 34704856 - 34704902
Alignment:
10 gcacagagtaaaaacaataaaaatttattaaaataacaatgcaacta 56  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
34704856 gcacagagtaaaaacaataaaaatttattaaaataacaatgcaacta 34704902  T

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Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 214 - 418
Target Start/End: Complemental strand, 16850136 - 16849932
Alignment:
214 agggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacct 313  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
16850136 agggggtgtttgtttccaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacct 16850037  T
314 gggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacattt 413  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
16850036 gggaacaaattatacccaggaaaatttttaacccatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacattt 16849937  T
414 gcctt 418  Q
    |||||    
16849936 gcctt 16849932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 218 - 409
Target Start/End: Complemental strand, 31739026 - 31738834
Alignment:
218 ggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctggga 317  Q
    ||||||||||| |||||||||||||||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31739026 ggtgtttgtttccaggttataaaatttatttcttaaaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctggga 31738927  T
318 acaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaat-gttttattcctaagaatgac 409  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||| |||||||    
31738926 acaaattatacccaggaaattttttaacccatgatctccccatttttattcccatgaaagaggagttggaatatttttattcctaggaatgac 31738834  T

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Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 214 - 418
Target Start/End: Original strand, 34967090 - 34967294
Alignment:
214 agggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacct 313  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
34967090 agggggtgtttgtttccaggttataaaatttattcctgggaatatgaggatgggaatgcactttctcatgtttggtagaaggtaaaagaaaaatatacct 34967189  T
314 gggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacattt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
34967190 gggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttgggatgttttattcctaagaatgacattt 34967289  T
414 gcctt 418  Q
    |||||    
34967290 gcctt 34967294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 212 - 418
Target Start/End: Original strand, 54207233 - 54207439
Alignment:
212 taagggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatac 311  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
54207233 taagggggtgtttgtttccaggttataaaatttattcctaggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatac 54207332  T
312 ctgggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacat 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
54207333 ctgggaacaaattatacccaggaaaatttttaacccatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacat 54207432  T
412 ttgcctt 418  Q
    |||||||    
54207433 ttgcctt 54207439  T

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Target: chr4; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 215 - 418
Target Start/End: Original strand, 9117443 - 9117646
Alignment:
215 gggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctg 314  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
9117443 gggggtgtttgtttccaggttataaaatttattcctaggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctg 9117542  T
315 ggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttg 414  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
9117543 ggaacaaattatacccaggaaaatttttaacccatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacatttg 9117642  T
415 cctt 418  Q
    ||||    
9117643 cctt 9117646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 216 - 418
Target Start/End: Complemental strand, 27742928 - 27742726
Alignment:
216 ggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgg 315  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27742928 ggggtgtttgtttccaggttataaaatttattcttgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgg 27742829  T
316 gaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttgc 415  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
27742828 gaacagattatacccatgaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttgc 27742729  T
416 ctt 418  Q
    |||    
27742728 ctt 27742726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 18978174 - 18978098
Alignment:
16 agtaaaaacaataaaaatttattaaaataacaatgcaactacaatagatttttggtggtaaatgatgtcaaaccaaa 92  Q
    |||||||| || |||| | |||||||| |||||||||| ||||| || ||||||||||||| || ||||||||||||    
18978174 agtaaaaataagaaaactctattaaaacaacaatgcaagtacaagaggtttttggtggtaagtggtgtcaaaccaaa 18978098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 25476960 - 25477017
Alignment:
238 aaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaagg 295  Q
    ||||||||||| |||||||||| | || ||||| ||| ||||||||||||||||||||    
25476960 aaaatttattcatgggaatatgtgaataggaatacacattcccatgtttggtagaagg 25477017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 212 - 418
Target Start/End: Original strand, 38006996 - 38007202
Alignment:
212 taagggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatac 311  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38006996 taagggggtgtttgtttccaggttataaaatttattcctaggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatac 38007095  T
312 ctgggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacat 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
38007096 ctgggaacaaattatacccaggaaaatttttaacccatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacat 38007195  T
412 ttgcctt 418  Q
    |||||||    
38007196 ttgcctt 38007202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 214 - 418
Target Start/End: Original strand, 51083358 - 51083563
Alignment:
214 agggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacct 313  Q
    ||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
51083358 agggggtgtttgtttccaagttataaaatttattccttggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatactt 51083457  T
314 gggaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatg-ttttattcctaagaatgacatt 412  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| ||||||||||| |||||||  |    
51083458 gggaacaaattatacccaggaaaatttttaacccatgatctctccatttttattcccatgaaagaggagtttgaatgtttttattcctaggaatgactat 51083557  T
413 tgcctt 418  Q
    ||||||    
51083558 tgcctt 51083563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 217 - 418
Target Start/End: Original strand, 11465584 - 11465785
Alignment:
217 gggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctggg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11465584 gggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctggg 11465683  T
317 aacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttgcc 416  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
11465684 aacaaattatacccatgaaaatttttaacccatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacatttgcc 11465783  T
417 tt 418  Q
    ||    
11465784 tt 11465785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 216 - 418
Target Start/End: Original strand, 3428480 - 3428682
Alignment:
216 ggggtgtttgttttcaggttataaaatttattcctgggaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgg 315  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3428480 ggggtgtttgtttccaggttataaaatttattcctggaaatatgaggatgggaatgcactttcccatgtttggtagaaggtaaaagaaaaatatacctgg 3428579  T
316 gaacaaattatacccaggaaaatttttaacccatgatctccccatttttattcccatgaaaaaggagttggaatgttttattcctaagaatgacatttgc 415  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
3428580 gaacaaattatacccaggaaaatttttaacctatgatctccctatttttattcccatgaaaaaggagttggaatgttttattcctaggaatgacatttgc 3428679  T
416 ctt 418  Q
    |||    
3428680 ctt 3428682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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