View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_high_23 (Length: 369)
Name: NF2880_high_23
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 14461553 - 14461297
Alignment:
| Q |
1 |
atgtaacataatttaaatttgaattagatagcacaaagtcacaataaaagtggtagnnnnnnntcaacaaccttgtgctcatcaaattgacccttagtct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
14461553 |
atgtaacataatttaaatttgaattagatagcacaaagtcacaataaaagtggtagaaaaaaatcaacaaccttgtgctcatcagattgacccttagtct |
14461454 |
T |
|
| Q |
101 |
tgcattgatcattggattcaacaactaaaagagcctcatttccaacaccattgcaccaagacacggttgataaacactgaaaaataaggacattcccact |
200 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
14461453 |
tgcattgatccttggattcaacaactacaagagcctcatttccaacaccattgcaccaagacacggttgataaacaccgaaaaataaggacattcccact |
14461354 |
T |
|
| Q |
201 |
cttcatacatcaaatatatacacatagatattgaaagaaaccctgaaagtaaccaaa |
257 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14461353 |
cttcatacatcaaatatatacacatagatattgaaagaaaccctgaaagtaaccaaa |
14461297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 253 - 349
Target Start/End: Complemental strand, 14461008 - 14460912
Alignment:
| Q |
253 |
ccaaactatgatttctattcacttaaactttgaaaaatgaagcatgtgttatctaccaatcttaacatgcgttcaatctttgccttatgaaatagtt |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
14461008 |
ccaaactatgatttctattcacttaaactttgaaaaatgaagcatgtgttatctaccaatcttaacatgcgttcaatctttgccctatgaaatagtt |
14460912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 50281331 - 50281549
Alignment:
| Q |
1 |
atgtaacataatttaaatttgaattagatagcacaaagtcacaataaaagtggtagnnnnnnntcaacaaccttgtgctcatcaaattgacccttagtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
50281331 |
atgtaacataatttaaatttgaattagatagcacaaagtcacaataaa-------------------caaccttgtgctcatcagattgacccttagtct |
50281411 |
T |
|
| Q |
101 |
tgcattgatcattggattcaacaactaaaagagcctcatttccaacaccattgcaccaagacacggttgataaacactgaaaaataaggacattcccact |
200 |
Q |
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|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50281412 |
tgcattgatccttggattcaacaactacaagagcctcatttccaacaccattgcaccaagacacggttgataaacactgaaaaataaggacattcccact |
50281511 |
T |
|
| Q |
201 |
cttcatacatcaaatatatacacatagatattgaaaga |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
50281512 |
cttcatacatcaaatatatacacatagatattgaaaga |
50281549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 50288975 - 50289193
Alignment:
| Q |
1 |
atgtaacataatttaaatttgaattagatagcacaaagtcacaataaaagtggtagnnnnnnntcaacaaccttgtgctcatcaaattgacccttagtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
50288975 |
atgtaacataatttaaatttgaattagatagcacaaagtcacaataaa-------------------caaccttgtgctcatcagattgacccttagtct |
50289055 |
T |
|
| Q |
101 |
tgcattgatcattggattcaacaactaaaagagcctcatttccaacaccattgcaccaagacacggttgataaacactgaaaaataaggacattcccact |
200 |
Q |
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|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50289056 |
tgcattgatccttggattcaacaactacaagagcctcatttccaacaccattgcaccaagacacggttgataaacactgaaaaataaggacattcccact |
50289155 |
T |
|
| Q |
201 |
cttcatacatcaaatatatacacatagatattgaaaga |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
50289156 |
cttcatacatcaaatatatacacatagatattgaaaga |
50289193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 50277307 - 50277525
Alignment:
| Q |
1 |
atgtaacataatttaaatttgaattagatagcacaaagtcacaataaaagtggtagnnnnnnntcaacaaccttgtgctcatcaaattgacccttagtct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
50277307 |
atgtaacataatttaaatttgaattagatagcacaaagtcacaataaa-------------------caaccttgtgctcatcagattgacccttagtct |
50277387 |
T |
|
| Q |
101 |
tgcattgatcattggattcaacaactaaaagagcctcatttccaacaccattgcaccaagacacggttgataaacactgaaaaataaggacattcccact |
200 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
50277388 |
tgcattgatccttggattcaacaactacaagagcctcatttccaacaccattgcaccaagacacggttgataaacacagaaaaataaggacattcccact |
50277487 |
T |
|
| Q |
201 |
cttcatacatcaaatatatacacatagatattgaaaga |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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|
| T |
50277488 |
cttcatacatcaaatatatacacatagatattgaaaga |
50277525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 248 - 349
Target Start/End: Original strand, 5659207 - 5659308
Alignment:
| Q |
248 |
agtaaccaaactatgatttctattcacttaaactttgaaaaatgaagcatgtgttatctaccaatcttaacatgcgttcaatctttgccttatgaaatag |
347 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| |||||||| |
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| T |
5659207 |
agtaacaaaactatgatttctattcacttaaactttgaaaaatgaagcatgtgttatcttccagtcttgacatgcgttcaatctttgccttgtgaaatag |
5659306 |
T |
|
| Q |
348 |
tt |
349 |
Q |
| |
|
|| |
|
|
| T |
5659307 |
tt |
5659308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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