View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_high_29 (Length: 302)
Name: NF2880_high_29
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_high_29 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 286
Target Start/End: Complemental strand, 17699571 - 17699294
Alignment:
| Q |
9 |
atcaattcacatcatatttggataattctgaaaaattccaataaatcacccatgaatcgattcatgagaagcttgaattgattcattcttgttgattttg |
108 |
Q |
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| T |
17699571 |
atcaattcacatcatataaggataattctgaaaaattccaataaatcacccatgaatcgattcatgagaagcttgaattgattcattcttgatgattttg |
17699472 |
T |
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| Q |
109 |
ttcgcaaacatccagaaccatatgtggtgaaatgattcatgtagtatttgaatcgattcaaatatattattatttagattctcttaaagatcgaatcgat |
208 |
Q |
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| T |
17699471 |
ttcgcaaacatccagaaccatatatggtgaaatgattcatgtagtatttgaatcgattcaaatatattattatttagattctcttaaagatcgaatcgat |
17699372 |
T |
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| Q |
209 |
ttagacttagtttaaattgatttatattgctaaaaatcaggcttttaagtgagtttaatgttttgttcctcacattat |
286 |
Q |
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| T |
17699371 |
ttagacctagtttaaattgatttatattgctaaaaatcaagcttttaagtgagtttaatgttttgttcctcacattat |
17699294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 28 - 172
Target Start/End: Complemental strand, 23296771 - 23296627
Alignment:
| Q |
28 |
ggataattctgaaaaattccaataaatcacccatgaatcgattcatgagaagcttgaattgattcattcttgttgattttgttcgcaaacatccagaacc |
127 |
Q |
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| T |
23296771 |
ggatgattctgaaaaattccaataaatcatccatgaatagattcatgagaagcttgaatttattcattcttgatgattttgttcacaaacatccagaacc |
23296672 |
T |
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| Q |
128 |
atatgtggtgaaatgattcatgtagtatttgaatcgattcaaata |
172 |
Q |
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| T |
23296671 |
atatgtggtgaaatgattcatgtagtatttgaaccgattcaaata |
23296627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 23296592 - 23296525
Alignment:
| Q |
216 |
tagtttaaattgatttatattgctaaaaatcaggcttttaagtgagtttaatgttttgttcctcacat |
283 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||| |||||| |
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| T |
23296592 |
tagtttaaattgatttatattgctaaaaatcaagcttttgagtgagttttatgttttgttcttcacat |
23296525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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