View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2880_high_4 (Length: 667)

Name: NF2880_high_4
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2880_high_4
NF2880_high_4
[»] chr7 (6 HSPs)
chr7 (560-650)||(3850325-3850415)
chr7 (560-609)||(41965777-41965826)
chr7 (595-642)||(20567549-20567596)
chr7 (561-610)||(35892302-35892351)
chr7 (561-605)||(767136-767180)
chr7 (561-609)||(767966-768014)
[»] chr8 (4 HSPs)
chr8 (560-648)||(35399177-35399265)
chr8 (561-642)||(42663277-42663358)
chr8 (561-609)||(5434032-5434080)
chr8 (561-609)||(26847097-26847145)
[»] chr3 (8 HSPs)
chr3 (560-642)||(15287566-15287648)
chr3 (415-516)||(9596649-9596750)
chr3 (561-642)||(9831229-9831310)
chr3 (561-609)||(14746041-14746089)
chr3 (561-609)||(43453439-43453487)
chr3 (561-652)||(24514970-24515061)
chr3 (561-610)||(3584005-3584054)
chr3 (561-609)||(41419619-41419667)
[»] chr4 (3 HSPs)
chr4 (561-609)||(13924793-13924841)
chr4 (559-608)||(25725809-25725858)
chr4 (561-609)||(21281161-21281209)
[»] chr5 (4 HSPs)
chr5 (561-608)||(24565573-24565620)
chr5 (561-608)||(24606609-24606656)
chr5 (568-610)||(39466892-39466934)
chr5 (561-609)||(23253486-23253534)
[»] chr1 (1 HSPs)
chr1 (562-609)||(4060050-4060097)
[»] scaffold1585 (1 HSPs)
scaffold1585 (573-638)||(446-511)
[»] chr2 (2 HSPs)
chr2 (561-609)||(4716873-4716921)
chr2 (560-608)||(7754968-7755016)


Alignment Details
Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 560 - 650
Target Start/End: Complemental strand, 3850415 - 3850325
Alignment:
Q  560 gggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccactactaagacgtgtgagattaatcaaattacacatatcatat 650  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| | |||||||||||    
T  3850415 gggtggaatctagggtgaggggccaattaaatccctcaccggtggaccactactaagacgcgtgagattaatcaaatcatacatatcatat 3850325  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 609
Target Start/End: Complemental strand, 41965826 - 41965777
Alignment:
Q  560 gggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 609  Q
    ||||||| ||||||||||||| |||||||| ||| |||||||||||||||    
T  41965826 gggtggattctagggtgagggtccaattaagtccctcaccggtggaccac 41965777  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 595 - 642
Target Start/End: Original strand, 20567549 - 20567596
Alignment:
Q  595 tcaccggtggaccactactaagacgtgtgagattaatcaaattacaca 642  Q
    ||||| ||||||||||| ||||| |||| |||||||||||||||||||    
T  20567549 tcaccagtggaccactattaagaggtgtcagattaatcaaattacaca 20567596  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 610
Target Start/End: Complemental strand, 35892351 - 35892302
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccact 610  Q
    |||||| |||||||||||||  ||||||||||| ||||||||| ||||||    
T  35892351 ggtggattctagggtgagggagcaattaaatccctcaccggtgtaccact 35892302  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 605
Target Start/End: Original strand, 767136 - 767180
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtgga 605  Q
    |||||| ||||||||||||| |||||||| ||| |||||||||||    
T  767136 ggtggattctagggtgagggtccaattaagtccctcaccggtgga 767180  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 609
Target Start/End: Complemental strand, 768014 - 767966
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 609  Q
    |||||| | ||||||||||| |||||||| ||| |||||||||||||||    
T  768014 ggtggattttagggtgagggtccaattaagtccctcaccggtggaccac 767966  T

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Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 560 - 648
Target Start/End: Original strand, 35399177 - 35399265
Alignment:
Q  560 gggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccactactaagacgtgtgagattaatcaaattacacatatcat 648  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||   |||||||||||||||||| |||||||||    
T  35399177 gggtggaatctagggtgaggggccaattaaatccctcaccggtggacgactactaagagacgtgagattaatcaaattagacatatcat 35399265  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 642
Target Start/End: Original strand, 42663277 - 42663358
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccactactaagacgtgtgagattaatcaaattacaca 642  Q
    |||||| ||||||||||| | |||||||| ||  ||||||||||| ||||| ||| | | || |||||||||||||||||||    
T  42663277 ggtggattctagggtgagagtccaattaagtctctcaccggtggatcactattaaaaggcgtcagattaatcaaattacaca 42663358  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 609
Target Start/End: Original strand, 5434032 - 5434080
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 609  Q
    |||||| ||||||||||||| |||||||| ||| |||||||||||||||    
T  5434032 ggtggattctagggtgagggtccaattaagtccttcaccggtggaccac 5434080  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 609
Target Start/End: Original strand, 26847097 - 26847145
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 609  Q
    |||||| ||||||||||||| |||||||| ||| ||||||||| |||||    
T  26847097 ggtggattctagggtgagggtccaattaagtccctcaccggtgaaccac 26847145  T

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Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 560 - 642
Target Start/End: Original strand, 15287566 - 15287648
Alignment:
Q  560 gggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccactactaagacgtgtgagattaatcaaattacaca 642  Q
    ||||||| ||||||||||||| |||||||| ||| ||||||||||||||||| ||||| | || |||||||||||||||||||    
T  15287566 gggtggattctagggtgagggtccaattaagtccctcaccggtggaccactattaagaggcgtcagattaatcaaattacaca 15287648  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 415 - 516
Target Start/End: Original strand, 9596649 - 9596750
Alignment:
Q  415 gtaacatcccacttatcagctaatgatattttatcagttggttttgtttaagtacgttttaagaagaagggtatttcgctaacttagtcacaaaggctat 514  Q
    |||| |||||||||||||| ||  |||||||| ||||||||||  ||||||||||||||||||| |||||||| |||| |||||| | ||||| || |||    
T  9596649 gtaatatcccacttatcagttagcgatattttttcagttggttcagtttaagtacgttttaagatgaagggtaattcgataacttggccacaaggggtat 9596748  T
Q  515 tt 516  Q
    ||    
T  9596749 tt 9596750  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 561 - 642
Target Start/End: Complemental strand, 9831310 - 9831229
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccactactaagacgtgtgagattaatcaaattacaca 642  Q
    |||||| ||| ||||||||| |||||||| ||| |||| |||||||||||| ||||| | || |||||||||||||||||||    
T  9831310 ggtggattctggggtgagggtccaattaagtccctcactggtggaccactattaagaggcgtcagattaatcaaattacaca 9831229  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 609
Target Start/End: Original strand, 14746041 - 14746089
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 609  Q
    |||||| ||||||||||||| |||||||||||| || ||||||||||||    
T  14746041 ggtggattctagggtgagggtccaattaaatccctccccggtggaccac 14746089  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 609
Target Start/End: Original strand, 43453439 - 43453487
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 609  Q
    |||||| ||||||||||||| |||||||||||| |||||| ||||||||    
T  43453439 ggtggattctagggtgagggtccaattaaatccctcaccgctggaccac 43453487  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 652
Target Start/End: Complemental strand, 24515061 - 24514970
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccactactaagacgtgtgagattaatcaaattacacatatcatattg 652  Q
    |||||| |||||||||||||    ||||| ||| ||||||||||||||||| |||||   || |||||||||| |||||||| ||| |||||    
T  24515061 ggtggattctagggtgagggagttattaagtccctcaccggtggaccactattaagagacgtcagattaatcagattacacacatcttattg 24514970  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 610
Target Start/End: Original strand, 3584005 - 3584054
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccact 610  Q
    |||||| |||||||||||||  ||||||||||| ||||||||| ||||||    
T  3584005 ggtggattctagggtgagggagcaattaaatccctcaccggtgtaccact 3584054  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 609
Target Start/End: Complemental strand, 41419667 - 41419619
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 609  Q
    |||||| ||||| |||||||||||||||  ||| |||||||||||||||    
T  41419667 ggtggattctagtgtgaggggccaattaggtccctcaccggtggaccac 41419619  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 561 - 609
Target Start/End: Original strand, 13924793 - 13924841
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 609  Q
    |||||| |||||||||||||  ||||||||||| |||||||||||||||    
T  13924793 ggtggattctagggtgagggctcaattaaatccctcaccggtggaccac 13924841  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 608
Target Start/End: Complemental strand, 25725858 - 25725809
Alignment:
Q  559 agggtggaatctagggtgaggggccaattaaatccgtcaccggtggacca 608  Q
    |||||||| |||||||||||||  ||||||| ||| ||||||||||||||    
T  25725858 agggtggagtctagggtgagggagcaattaagtccctcaccggtggacca 25725809  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 609
Target Start/End: Complemental strand, 21281209 - 21281161
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 609  Q
    |||||| ||||||||||||| ||||||| |||| ||| |||||||||||    
T  21281209 ggtggattctagggtgagggtccaattagatccctcatcggtggaccac 21281161  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 608
Target Start/End: Original strand, 24565573 - 24565620
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggacca 608  Q
    |||||| |||||||||||||  ||||||||||| ||||||||||||||    
T  24565573 ggtggattctagggtgagggttcaattaaatccctcaccggtggacca 24565620  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 608
Target Start/End: Original strand, 24606609 - 24606656
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggacca 608  Q
    |||||| |||||||||||||  ||||||||||| ||||||||||||||    
T  24606609 ggtggattctagggtgagggttcaattaaatccctcaccggtggacca 24606656  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 610
Target Start/End: Original strand, 39466892 - 39466934
Alignment:
Q  568 tctagggtgaggggccaattaaatccgtcaccggtggaccact 610  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||    
T  39466892 tctagggtgagggtccaattaagtccctcaccggtggaccact 39466934  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 609
Target Start/End: Complemental strand, 23253534 - 23253486
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 609  Q
    |||||| ||||||||||||| |||||||| ||| ||||||||| |||||    
T  23253534 ggtggattctagggtgagggtccaattaagtccctcaccggtgaaccac 23253486  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 562 - 609
Target Start/End: Complemental strand, 4060097 - 4060050
Alignment:
Q  562 gtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 609  Q
    ||||| |||||| ||||||  |||||||||||||||||||||||||||    
T  4060097 gtggattctaggatgagggctcaattaaatccgtcaccggtggaccac 4060050  T

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Target: scaffold1585 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1585
Description:

Target: scaffold1585; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 573 - 638
Target Start/End: Complemental strand, 511 - 446
Alignment:
Q  573 ggtgaggggccaattaaatccgtcaccggtggaccactactaagacgtgtgagattaatcaaatta 638  Q
    |||||| | |||||||| ||| ||||||||||||||||| ||||| || | | |||||||||||||    
T  511 ggtgagagtccaattaagtccatcaccggtggaccactattaagaggtatcaaattaatcaaatta 446  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 609
Target Start/End: Complemental strand, 4716921 - 4716873
Alignment:
Q  561 ggtggaatctagggtgaggggccaattaaatccgtcaccggtggaccac 609  Q
    |||||| ||||||||||||| |||||||||| | |||| ||||||||||    
T  4716921 ggtggattctagggtgagggtccaattaaattcttcactggtggaccac 4716873  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 608
Target Start/End: Complemental strand, 7755016 - 7754968
Alignment:
Q  560 gggtggaatctagggtgaggggccaattaaatccgtcaccggtggacca 608  Q
    ||||||| |||||||||||||  ||||||| ||| ||||||||||||||    
T  7755016 gggtggattctagggtgagggatcaattaagtccttcaccggtggacca 7754968  T

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