View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_high_41 (Length: 241)
Name: NF2880_high_41
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_high_41 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 25629221 - 25629449
Alignment:
| Q |
1 |
aagttttcttttagtattgtttcagatacacacttgagatttatgatttggaatattagtctttaatatgtaacaattgacgtaaattggtctttagatc |
100 |
Q |
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| T |
25629221 |
aagttttcttttagtattgtttcagatacacacttgagatttatgatttggaatattagtctttaatatgtaacaattgacgtaaattgttctttagatc |
25629320 |
T |
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| Q |
101 |
tcctgttaatttataaaatatatgtt-gaagaatatgtttgact---tgaagatatcaagttatttgaaatgctttaaagcaagatgattaactgatcgt |
196 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25629321 |
tcctgttattttataaaatatatgttagaagaatatgtttgacttgatgaagatatcaagttatttgaaatgctttaaagcaagatgattaactgatcgt |
25629420 |
T |
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| Q |
197 |
tctgtaggatacaaatgaatgctctgatt |
225 |
Q |
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| T |
25629421 |
tctgtaggatacaaatgaatgctctgatt |
25629449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 30250284 - 30250333
Alignment:
| Q |
144 |
tgaagatatcaagttatttgaaatgctttaaagcaagatgattaactgat |
193 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30250284 |
tgaaaatatcaagttatttgaaatgctttaaagaaagatgattaactgat |
30250333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 34325741 - 34325814
Alignment:
| Q |
144 |
tgaagatatcaagttatttgaaatgctttaaagcaagatgattaactgatcgttctgtaggatacaaatgaatg |
217 |
Q |
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|||| ||||||||||||||||||||| |||||| |||||||||||||||| ||| || || || |||||||||| |
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| T |
34325741 |
tgaaaatatcaagttatttgaaatgccttaaagaaagatgattaactgattgttttgcagaatgcaaatgaatg |
34325814 |
T |
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