View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_high_43 (Length: 236)
Name: NF2880_high_43
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_high_43 |
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| [»] scaffold0325 (1 HSPs) |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: scaffold0325 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: scaffold0325
Description:
Target: scaffold0325; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 10247 - 10383
Alignment:
| Q |
84 |
attgggaaatgattaaaagcacgacacattttttcatgcatatcccacgattgattttgcatttgacaagtcaactatattaaattctaaaatcattttg |
183 |
Q |
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| T |
10247 |
attgggaaatgattaaaagcacgacacattttttcgtgcatatcccacgattgattttgcatttgacaagtcaactatattaaattctaaaatcattttg |
10346 |
T |
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| Q |
184 |
ttccctttaacaaagggcttactgttaactaccaaag |
220 |
Q |
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| T |
10347 |
ttccctttaacaaagggcttactgttaactaccaaag |
10383 |
T |
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Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 18069070 - 18069206
Alignment:
| Q |
84 |
attgggaaatgattaaaagcacgacacattttttcatgcatatcccacgattgattttgcatttgacaagtcaactatattaaattctaaaatcattttg |
183 |
Q |
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| T |
18069070 |
attgggaaatgattaaaagcacgacacattttttcgtgcatatcccacgattgattttgtatttgacaagtcaactatattaaattctaaaatcattttg |
18069169 |
T |
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| Q |
184 |
ttccctttaacaaagggcttactgttaactaccaaag |
220 |
Q |
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| T |
18069170 |
ttccctttaacgaagggcttactgttaactaccaaag |
18069206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 39071584 - 39071508
Alignment:
| Q |
1 |
tttacataccagtttttcattttcattacccatataagttacgaaacaactctccattaatttcactttatgcatgtt |
78 |
Q |
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| T |
39071584 |
tttacattccattttttcattttcatttaccatataggttacgaattaactct-cattgatttgactttatgcatgtt |
39071508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 43505896 - 43505841
Alignment:
| Q |
13 |
tttttcattttcattacccatataagttacgaaacaactctccattaatttcactt |
68 |
Q |
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| T |
43505896 |
tttttcattttcatttcccatataggttacgaattaactctccattgatttgactt |
43505841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 90 - 220
Target Start/End: Complemental strand, 52267215 - 52267085
Alignment:
| Q |
90 |
aaatgattaaaagcacgacacattttttcatgcatatcccacgattgattttgcatttgacaagtcaactatattaaattctaaaatcattttgttccct |
189 |
Q |
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| T |
52267215 |
aaatgattaaaagcacgacacattttttcgtgcatatcccacgattgattttgcatttgacaagtcaactatattaaattctaaaatcattttattacct |
52267116 |
T |
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| Q |
190 |
ttaacaaagggcttactgttaactaccaaag |
220 |
Q |
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| T |
52267115 |
ttaacaaagggcttactgttaactaccaaag |
52267085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 87 - 220
Target Start/End: Complemental strand, 24900985 - 24900852
Alignment:
| Q |
87 |
gggaaatgattaaaagcacgacacattttttcatgcatatcccacgattgattttgcatttgacaagtcaactatattaaattctaaaatcattttgttc |
186 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24900985 |
gggaaatgattaaaagcacgacacattttttcgtgcatatcccacaattgattttgcatttgacaagtcaactatattaaattctaaaatcattttgttc |
24900886 |
T |
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| Q |
187 |
cctttaacaaagggcttactgttaactaccaaag |
220 |
Q |
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| T |
24900885 |
ccttttacgaagggcttactgttaactaccaaag |
24900852 |
T |
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Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 42124383 - 42124468
Alignment:
| Q |
1 |
tttacataccagtttttcattttcattacccatataagttacgaaacaactctccattaatttcactttatgcatgttttatgatt |
86 |
Q |
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| T |
42124383 |
tttacatgccagtttttcattttcattacccatataagttacgaaacaactctccattaatttcactttatgcatgttttatgatt |
42124468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 49670 - 49732
Alignment:
| Q |
14 |
ttttcattttcattacccatataagttacgaaacaactctccattaatttcactttatgcatgtt |
78 |
Q |
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|||||||||||||| |||||| ||||||||| |||||||||||||||| |||||||||||||| |
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| T |
49670 |
ttttcattttcatttcccata--agttacgaattaactctccattaatttgactttatgcatgtt |
49732 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 347945 - 347992
Alignment:
| Q |
31 |
catataagttacgaaacaactctccattaatttcactttatgcatgtt |
78 |
Q |
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||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
347945 |
catataagttacgaattaactctccattaatttgactttatgcatgtt |
347992 |
T |
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