View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2880_high_7 (Length: 592)

Name: NF2880_high_7
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2880_high_7
NF2880_high_7
[»] chr6 (21 HSPs)
chr6 (53-571)||(8850454-8850972)
chr6 (183-263)||(28112172-28112252)
chr6 (82-208)||(12988432-12988557)
chr6 (170-263)||(31071941-31072033)
chr6 (180-260)||(6512892-6512972)
chr6 (183-263)||(28108196-28108276)
chr6 (183-215)||(2378914-2378946)
chr6 (183-215)||(3597189-3597221)
chr6 (183-215)||(11401941-11401973)
chr6 (183-215)||(13004873-13004905)
chr6 (183-215)||(26942842-26942874)
chr6 (183-215)||(28665671-28665703)
chr6 (183-215)||(30655128-30655160)
chr6 (185-260)||(2845941-2846016)
chr6 (184-215)||(5259621-5259652)
chr6 (82-208)||(13021561-13021686)
chr6 (183-213)||(11247448-11247478)
chr6 (183-215)||(10289657-10289689)
chr6 (183-215)||(11126103-11126135)
chr6 (183-215)||(11188323-11188355)
chr6 (183-215)||(22561571-22561603)
[»] chr3 (42 HSPs)
chr3 (82-485)||(27298756-27299165)
chr3 (82-315)||(27308315-27308546)
chr3 (97-273)||(27308887-27309063)
chr3 (162-364)||(8099174-8099373)
chr3 (82-263)||(18542270-18542452)
chr3 (82-208)||(11636608-11636733)
chr3 (79-215)||(22360214-22360349)
chr3 (183-263)||(35751174-35751254)
chr3 (180-215)||(29344266-29344301)
chr3 (82-215)||(45896148-45896281)
chr3 (79-260)||(22993989-22994168)
chr3 (183-236)||(7486317-7486370)
chr3 (183-216)||(27091661-27091694)
chr3 (183-236)||(30690482-30690535)
chr3 (183-263)||(47051215-47051295)
chr3 (183-215)||(2873332-2873364)
chr3 (183-215)||(3840284-3840316)
chr3 (183-215)||(11190294-11190326)
chr3 (183-215)||(20729041-20729073)
chr3 (183-215)||(24125267-24125299)
chr3 (183-215)||(24128544-24128576)
chr3 (183-215)||(25584455-25584487)
chr3 (183-215)||(32287718-32287750)
chr3 (183-215)||(41976783-41976815)
chr3 (183-215)||(43926603-43926635)
chr3 (183-215)||(47054693-47054725)
chr3 (183-215)||(50461943-50461975)
chr3 (183-215)||(54723509-54723541)
chr3 (48-84)||(54834164-54834200)
chr3 (183-236)||(30220403-30220456)
chr3 (54-84)||(33389408-33389438)
chr3 (287-336)||(6030457-6030506)
chr3 (79-215)||(22370117-22370252)
chr3 (93-153)||(282495-282555)
chr3 (487-519)||(7167804-7167836)
chr3 (183-215)||(17040416-17040448)
chr3 (183-215)||(19301899-19301931)
chr3 (183-215)||(19305083-19305115)
chr3 (183-215)||(22783360-22783392)
chr3 (183-215)||(22787724-22787756)
chr3 (183-215)||(28008464-28008496)
chr3 (183-215)||(52309952-52309984)
[»] scaffold0187 (1 HSPs)
scaffold0187 (93-358)||(31249-31514)
[»] chr1 (22 HSPs)
chr1 (93-358)||(37907563-37907828)
chr1 (93-263)||(7635281-7635451)
chr1 (82-263)||(27332077-27332258)
chr1 (93-215)||(34066758-34066880)
chr1 (83-236)||(34732667-34732819)
chr1 (169-263)||(6071348-6071441)
chr1 (183-263)||(27536693-27536773)
chr1 (48-84)||(31697347-31697383)
chr1 (48-84)||(50124389-50124425)
chr1 (183-215)||(20398537-20398569)
chr1 (183-215)||(21018873-21018905)
chr1 (183-215)||(23022331-23022363)
chr1 (183-215)||(28110741-28110773)
chr1 (183-215)||(31204522-31204554)
chr1 (183-215)||(37184271-37184303)
chr1 (183-215)||(41058709-41058741)
chr1 (183-215)||(45961152-45961184)
chr1 (53-84)||(50123939-50123970)
chr1 (54-84)||(24509250-24509280)
chr1 (183-213)||(45941102-45941132)
chr1 (54-84)||(52750389-52750419)
chr1 (183-215)||(11668433-11668465)
[»] scaffold0034 (1 HSPs)
scaffold0034 (82-359)||(48709-48986)
[»] chr2 (31 HSPs)
chr2 (81-354)||(35521671-35521941)
chr2 (48-87)||(8892843-8892882)
chr2 (263-346)||(11187611-11187694)
chr2 (94-236)||(22630486-22630627)
chr2 (170-263)||(31427938-31428030)
chr2 (183-263)||(9966712-9966792)
chr2 (183-263)||(33310283-33310363)
chr2 (183-263)||(45453491-45453571)
chr2 (183-263)||(45456778-45456858)
chr2 (48-87)||(12602376-12602415)
chr2 (183-236)||(43723345-43723398)
chr2 (183-215)||(8888300-8888332)
chr2 (183-215)||(9185832-9185864)
chr2 (183-215)||(9189061-9189093)
chr2 (48-84)||(10708363-10708399)
chr2 (183-215)||(11348304-11348336)
chr2 (183-215)||(13972302-13972334)
chr2 (183-215)||(22020733-22020765)
chr2 (183-215)||(25960097-25960129)
chr2 (183-215)||(27266453-27266485)
chr2 (183-215)||(30190001-30190033)
chr2 (183-215)||(38015183-38015215)
chr2 (183-215)||(40781137-40781169)
chr2 (183-215)||(42369119-42369151)
chr2 (162-229)||(6298117-6298183)
chr2 (183-213)||(5105393-5105423)
chr2 (186-216)||(24234759-24234789)
chr2 (189-263)||(31430104-31430178)
chr2 (183-213)||(43208298-43208328)
chr2 (183-216)||(24238031-24238064)
chr2 (187-215)||(37280089-37280117)
[»] chr5 (26 HSPs)
chr5 (83-246)||(563530-563692)
chr5 (93-270)||(31575045-31575222)
chr5 (82-178)||(18765947-18766044)
chr5 (82-202)||(21914818-21914937)
chr5 (183-263)||(17664187-17664267)
chr5 (48-87)||(13824428-13824467)
chr5 (48-87)||(24041971-24042010)
chr5 (269-358)||(18766058-18766147)
chr5 (183-263)||(7624737-7624817)
chr5 (183-263)||(20055409-20055489)
chr5 (48-84)||(38385102-38385138)
chr5 (82-215)||(41877071-41877204)
chr5 (183-236)||(26896011-26896064)
chr5 (183-236)||(26753109-26753162)
chr5 (183-215)||(7270699-7270731)
chr5 (183-215)||(14016546-14016578)
chr5 (183-215)||(18952376-18952408)
chr5 (183-215)||(22129948-22129980)
chr5 (183-215)||(30066025-30066057)
chr5 (183-215)||(33551804-33551836)
chr5 (183-215)||(34831446-34831478)
chr5 (183-215)||(41306934-41306966)
chr5 (180-215)||(18239900-18239935)
chr5 (54-84)||(38385592-38385622)
chr5 (183-215)||(4099929-4099961)
chr5 (183-215)||(18032141-18032173)
[»] chr7 (24 HSPs)
chr7 (82-350)||(24917731-24917998)
chr7 (83-348)||(2090144-2090408)
chr7 (183-263)||(14683856-14683936)
chr7 (170-263)||(6603080-6603172)
chr7 (82-215)||(7227197-7227330)
chr7 (160-215)||(18562923-18562977)
chr7 (183-261)||(11398438-11398516)
chr7 (183-215)||(9405927-9405959)
chr7 (183-215)||(9865139-9865171)
chr7 (48-84)||(14682782-14682818)
chr7 (183-215)||(17730484-17730516)
chr7 (48-84)||(30474955-30474991)
chr7 (53-84)||(30474514-30474545)
chr7 (169-263)||(13842262-13842355)
chr7 (50-84)||(14682127-14682161)
chr7 (50-84)||(16956160-16956194)
chr7 (170-215)||(16165418-16165462)
chr7 (51-84)||(25443234-25443267)
chr7 (170-215)||(48645144-48645188)
chr7 (183-215)||(4596421-4596453)
chr7 (183-215)||(4695194-4695226)
chr7 (52-84)||(17238427-17238459)
chr7 (183-215)||(23225318-23225350)
chr7 (183-215)||(23234471-23234503)
[»] scaffold0233 (1 HSPs)
scaffold0233 (82-260)||(9575-9753)
[»] scaffold0045 (1 HSPs)
scaffold0045 (183-263)||(89404-89484)
[»] chr8 (12 HSPs)
chr8 (183-270)||(7944352-7944439)
chr8 (183-263)||(36711063-36711143)
chr8 (170-215)||(22174319-22174363)
chr8 (183-215)||(12582688-12582720)
chr8 (183-215)||(16953456-16953488)
chr8 (183-215)||(18824802-18824834)
chr8 (183-215)||(18826295-18826327)
chr8 (183-236)||(2560248-2560301)
chr8 (183-215)||(5614135-5614167)
chr8 (183-215)||(5980720-5980752)
chr8 (183-215)||(30784610-30784642)
chr8 (187-215)||(38248811-38248839)
[»] scaffold0002 (1 HSPs)
scaffold0002 (183-260)||(118854-118931)
[»] chr4 (35 HSPs)
chr4 (79-215)||(34018085-34018220)
chr4 (183-263)||(15405492-15405572)
chr4 (183-263)||(56195161-56195241)
chr4 (79-215)||(27691447-27691583)
chr4 (82-140)||(37740069-37740126)
chr4 (183-236)||(15436877-15436930)
chr4 (79-140)||(33493998-33494059)
chr4 (170-263)||(33926601-33926693)
chr4 (170-215)||(34320313-34320357)
chr4 (51-84)||(44183609-44183642)
chr4 (170-215)||(44809351-44809395)
chr4 (170-263)||(46955874-46955966)
chr4 (51-84)||(50282721-50282754)
chr4 (183-215)||(15163874-15163906)
chr4 (184-236)||(15430264-15430316)
chr4 (183-215)||(19820410-19820442)
chr4 (183-215)||(19827172-19827204)
chr4 (183-215)||(24150354-24150386)
chr4 (183-215)||(27677462-27677494)
chr4 (183-215)||(29324507-29324539)
chr4 (183-215)||(38283896-38283928)
chr4 (183-215)||(39501330-39501362)
chr4 (183-215)||(40903491-40903523)
chr4 (183-215)||(44164465-44164497)
chr4 (48-84)||(45044604-45044640)
chr4 (183-215)||(48637187-48637219)
chr4 (183-215)||(52006938-52006970)
chr4 (183-215)||(52531343-52531375)
chr4 (183-215)||(53094189-53094221)
chr4 (183-214)||(8877909-8877940)
chr4 (183-213)||(48415937-48415967)
chr4 (185-215)||(56198535-56198565)
chr4 (183-260)||(8448950-8449027)
chr4 (187-236)||(48014459-48014508)
chr4 (183-215)||(12782587-12782619)
[»] scaffold1684 (1 HSPs)
scaffold1684 (183-263)||(48-128)
[»] scaffold0250 (1 HSPs)
scaffold0250 (180-215)||(19078-19113)
[»] scaffold0757 (1 HSPs)
scaffold0757 (183-215)||(5035-5067)
[»] scaffold0427 (1 HSPs)
scaffold0427 (183-215)||(4196-4228)
[»] scaffold0024 (1 HSPs)
scaffold0024 (183-215)||(84923-84955)
[»] scaffold0520 (2 HSPs)
scaffold0520 (183-211)||(4387-4415)
scaffold0520 (183-211)||(8626-8654)
[»] scaffold0126 (1 HSPs)
scaffold0126 (183-215)||(82-114)


Alignment Details
Target: chr6 (Bit Score: 483; Significance: 0; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 53 - 571
Target Start/End: Original strand, 8850454 - 8850972
Alignment:
Q  53 ttcatcatcatcttcatcaaatctataaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatt 152  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8850454 ttcatcatcatcttcatcaaatctataaatattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatgtt 8850553  T
Q  153 tcaaacaggttacatcagattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaac 252  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8850554 tcaaacaggttacatcagattcatcttcaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaac 8850653  T
Q  253 acatacataaattgactatgagtgggatggaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttattt 352  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8850654 acatacataaattgactatgagagggatggaatgaccacctcttcagtcttgtgctctcaaaatcgtcttttagatctccaaaattaagaacccttattt 8850753  T
Q  353 ctgaaacaggttaataggaaattcctgtgatcaaaatcgtgtcacaattctcagtaatcgtgccacaattccatctctaaacctaaattcctgctcgaac 452  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8850754 ctaaaacaggttaataggaaattcatgtgatcaaaatcgtgtcacaattctcagtaatcgtgccacaattccatctctaaacctaaattcctgctcgaac 8850853  T
Q  453 catcttcaaaatcgtgtcacgcattacaaaatcatgaaattgtgtcacgatgccaaaatcatgtcaccgtgcaacaatttcttgttgttcatattttatt 552  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8850854 catcttcaaaatcgtgtcacgcattacaaaatcataaaattgtgtcacaatgccaaaatcatgtcaccgtgcaacaatttcttgttgttcatattttatt 8850953  T
Q  553 acttttcacacccctggtt 571  Q
    |||||||||||||||||||    
T  8850954 acttttcacacccctggtt 8850972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 28112172 - 28112252
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||||||| ||||| |||||||||||    
T  28112172 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaattaaagaattaaaacatacataaa 28112252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 12988432 - 12988557
Alignment:
Q  82 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctcc 180  Q
    |||||| || |||||||||||||||||||||||| ||||||| ||  ||||||| |||| ||| | ||  |||||  ||| |||||||||| |||||||     
T  12988432 cattaagaaatattgaattgaataaaactagattgatattcacaat-aatagagcttcacagcaacatggttcaattagggttacatcagaatcatctc- 12988529  T
Q  181 aaacctaatctctaagagatttagctac 208  Q
    | ||||||||||||||||||||||||||    
T  12988530 agacctaatctctaagagatttagctac 12988557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 31072033 - 31071941
Alignment:
Q  170 gattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||| | |||||||||||||||||||||||||||||||||     |||||||||||||||| |||  ||| ||||| |||||||||||    
T  31072033 gattcatctc-agacctaatctctaagagatttagctactcataattgagtttacaaataacataataaatggaagaattaaaacatacataaa 31071941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 260
Target Start/End: Complemental strand, 6512972 - 6512892
Alignment:
Q  180 caaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacat 260  Q
    ||||||||||||||||||||||||||||||||||||     ||||||||| |||||| ||| | || ||||| ||||||||    
T  6512972 caaacctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaataatagaattaaaacatacat 6512892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 28108196 - 28108276
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacga-attacaaataacataattaattaaagcattaacacatacataaa 263  Q
    ||||||| | ||||||||||||||||||||||| |||  ||||||||| |||||| ||| |||| ||||| |||||||||||    
T  28108196 acctaatatataagagatttagctactcataat-cgagtttacaaatagcataatcaatgaaagaattaaaacatacataaa 28108276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 2378946 - 2378914
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  2378946 acctaatctctaagagatttagctactcataat 2378914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 3597189 - 3597221
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  3597189 acctaatctctaagagatttagctactcataat 3597221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 11401973 - 11401941
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  11401973 acctaatctctaagagatttagctactcataat 11401941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 13004905 - 13004873
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  13004905 acctaatctctaagagatttagctactcataat 13004873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 26942842 - 26942874
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  26942842 acctaatctctaagagatttagctactcataat 26942874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 28665671 - 28665703
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  28665671 acctaatctctaagagatttagctactcataat 28665703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 30655160 - 30655128
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  30655160 acctaatctctaagagatttagctactcataat 30655128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 2846016 - 2845941
Alignment:
Q  185 ctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacat 260  Q
    |||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| ||||||||    
T  2846016 ctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatataagaattaaaacatacat 2845941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 215
Target Start/End: Complemental strand, 5259652 - 5259621
Alignment:
Q  184 cctaatctctaagagatttagctactcataat 215  Q
    ||||||||||||||||||||||||||||||||    
T  5259652 cctaatctctaagagatttagctactcataat 5259621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 208
Target Start/End: Original strand, 13021561 - 13021686
Alignment:
Q  82 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 180  Q
    |||||| || |||||||||||||||||||||||| ||||||| ||  ||||||| |||| | | | ||  |||||  | |||||||||||| |||||| |    
T  13021561 cattaagaaatattgaattgaataaaactagattgatattcacaa-taatagagcttcacaacaacatggttcaattagggttacatcagaatcatct-c 13021658  T
Q  181 aaacctaatctctaagagatttagctac 208  Q
    | |||||  |||||||||||||||||||    
T  13021659 agacctatcctctaagagatttagctac 13021686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 213
Target Start/End: Complemental strand, 11247478 - 11247448
Alignment:
Q  183 acctaatctctaagagatttagctactcata 213  Q
    |||||||||||||||||||||||||||||||    
T  11247478 acctaatctctaagagatttagctactcata 11247448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 10289689 - 10289657
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||| ||||||||||    
T  10289689 acctaatctctaagagatttagttactcataat 10289657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 11126103 - 11126135
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||| ||||||    
T  11126103 acctaatctctaagagatttagctacccataat 11126135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 11188323 - 11188355
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||| ||||||||||||||||||||||||||||    
T  11188323 acctgatctctaagagatttagctactcataat 11188355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 22561571 - 22561603
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    ||||||||||||| |||||||||||||||||||    
T  22561571 acctaatctctaaaagatttagctactcataat 22561603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 5e-79; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 82 - 485
Target Start/End: Original strand, 27298756 - 27299165
Alignment:
Q  82 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctcc 180  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| |||||||||||||||| ||||| || ||||||||| | |||| |||||||||||||     
T  27298756 cattaagaacaattgaattgaataaaactagattgatattcacaagcaatagagtttcacagccacatgtttcaaacatgattacttcagattcatctc- 27298854  T
Q  181 aaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagtgggat 280  Q
    | ||||||||||||||| |||||||||||| ||||| | |||||||||| ||| || |||| |||||| || |||||| |||| |||||||||||  |||    
T  27298855 agacctaatctctaagacatttagctactcgtaatatggattacaaataccatcataaattgaagcataaaaacatacgtaaactgactatgagtttgat 27298954  T
Q  281 ggaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttatttctgaaacaggtt-------aataggaaa 373  Q
    ||||||||||||||||||||||| |||||| |||| |  | || | |||||||||||| ||||||||| |||||||||||||||       |||||||||    
T  27298955 ggaatgaccacctcttcagtcttctgctctaaaaaccacacttcaaatctccaaaattcagaacccttgtttctgaaacaggtttagcttaaataggaaa 27299054  T
Q  374 ttcctgtgatcaaaatcgtgtcacaattctcagtaatcgtgccacaattccatctctaaacctaaattcctgctcgaaccatcttcaaaatcgtgtcacg 473  Q
    ||  |||||  ||||||||||||  || |||||||||||||||||| || || |||||||||||| |||| | |||  |  |||||||||| ||||||||    
T  27299055 tt-atgtgacaaaaatcgtgtcatgatcctcagtaatcgtgccacattttcagctctaaacctaacttccggatcgccctctcttcaaaattgtgtcacg 27299153  T
Q  474 cattacaaaatc 485  Q
    | ||| ||||||    
T  27299154 ccttataaaatc 27299165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 82 - 315
Target Start/End: Original strand, 27308315 - 27308546
Alignment:
Q  82 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaac-aggttacatcagattcatctcc 180  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| |||||||||| ||||||||||| || ||| |||| || |||| |||||||||||| |    
T  27308315 cattaagaacaattgaattgaataaaactagattgatattcacaagcaatagattttcatagccacatgttttaaacaagattacttcagattcatct-c 27308413  T
Q  181 aaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagtgggat 280  Q
    | |||||||||||||||||||||||||| ||||||| | ||| |||||||||| | |  || |||||| || |||||||||||  ||||||||  |||||    
T  27308414 agacctaatctctaagagatttagctacacataatatggattgcaaataacatcaatcgttgaagcataaaaacatacataaaccgactatga--gggat 27308511  T
Q  281 ggaatgaccacctcttcagtcttgtgctctcaaaa 315  Q
    |||||| |||||||||||||||| |||||| ||||    
T  27308512 ggaatggccacctcttcagtcttctgctctgaaaa 27308546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 97 - 273
Target Start/End: Original strand, 27308887 - 27309063
Alignment:
Q  97 aattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctccaaacctaatctctaa 195  Q
    |||||||||||| |||||| ||||||| |||||||||||||||| | ||| || ||||||||| | |||| ||||||||||||| | |||||||||||||    
T  27308887 aattgaataaaaatagattgatattcacaagcaatagagtttcacaaccaaatgtttcaaacaagattacttcagattcatctc-agacctaatctctaa 27308985  T
Q  196 gagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatga 273  Q
    ||||||||||||||||||||| |||||||||||||||| || | || |||||| || ||||||||||| | |||||||    
T  27308986 gagatttagctactcataatatgaattacaaataacatcatcagttgaagcataaaaacatacataaactaactatga 27309063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 162 - 364
Target Start/End: Original strand, 8099174 - 8099373
Alignment:
Q  162 ttacatcagattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacata 261  Q
    |||||||| ||||||||||| | | |||| ||||  |||||| ||||| ||||    |||||||||||||||||| | |  |||| |||| ||||||| |    
T  8099174 ttacatcatattcatctccagatccaatcactaat-gatttaactactgataactgaaattacaaataacataatcattctaagctttaaaacatacaaa 8099272  T
Q  262 aattgactatgagtgggatggaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttatttctgaaacag 361  Q
    |  ||||||||||| ||||||| |||||||||||||| |||| |||||||||||||||  || ||||  || ||||| ||||||||| ||| ||||||||    
T  8099273 a--tgactatgagttggatggactgaccacctcttcaatcttatgctctcaaaatcgtgcttcagataccctaaattcagaacccttgtttttgaaacag 8099370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 82 - 263
Target Start/End: Complemental strand, 18542452 - 18542270
Alignment:
Q  82 cattaaaaactattgaattgaataaaactagattaatattcataa--gcaatagagtttcatagccatatatttcaaacaggttacatcagattcatctc 179  Q
    |||||| ||| ||||||||||||||||||| ||| |||||||||   | |||||||||||| |   | |   |||||||||  ||||||| |||||||||    
T  18542452 cattaagaacaattgaattgaataaaactatattgatattcatatatgaaatagagtttcacattaacaaggttcaaacagagtacatcatattcatctc 18542353  T
Q  180 caaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
     ||||||||||||||| |||||||||||||||||||   | ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  18542352 -aaacctaatctctaaaagatttagctactcataattgaatttacaaatagcataatcaatggaagaattaaaacatacataaa 18542270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 82 - 208
Target Start/End: Complemental strand, 11636733 - 11636608
Alignment:
Q  82 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 180  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| ||  |||||||||||| ||| | ||  |||||  | |||||||||||| |||||| |    
T  11636733 cattaagaacaattgaattgaataaaactagattgatattcacaa-taatagagtttcacagcaacatggttcaattagggttacatcagaatcatct-c 11636636  T
Q  181 aaacctaatctctaagagatttagctac 208  Q
    | ||||||||||||||||||||||||||    
T  11636635 agacctaatctctaagagatttagctac 11636608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 22360349 - 22360214
Alignment:
Q  79 aaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatc 177  Q
    ||||||||| ||| ||||||||||||| || |||||| ||||||| ||| ||| |||||||| | | | || ||| ||  ||| ||||| || | |||||    
T  22360349 aaacattaagaacaattgaattgaatataaatagattgatattcacaagaaattgagtttcacatcaacatgtttaaattagggttaca-cataatcatc 22360251  T
Q  178 tccaaacctaatctctaagagatttagctactcataat 215  Q
    || | |||||||||||||||||||||||||||||||||    
T  22360250 tc-agacctaatctctaagagatttagctactcataat 22360214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 35751254 - 35751174
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  35751254 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 35751174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 29344266 - 29344301
Alignment:
Q  180 caaacctaatctctaagagatttagctactcataat 215  Q
    ||||||||||||||||||||||||||||||||||||    
T  29344266 caaacctaatctctaagagatttagctactcataat 29344301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 82 - 215
Target Start/End: Complemental strand, 45896281 - 45896148
Alignment:
Q  82 cattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctc 179  Q
    |||||| ||| |||||||||||||||| |||||||   ||||| ||  |||||||||||| ||| ||||  |||||  ||| |||||  ||| |||||||    
T  45896281 cattaagaacaattgaattgaataaaaactagattgtcattcacaataaatagagtttcacagcaatatggttcaattagggttacaa-agaatcatctc 45896183  T
Q  180 caaacctaatctctaagagatttagctactcataat 215  Q
     | |||||||||||||||||||||||||||||||||    
T  45896182 -agacctaatctctaagagatttagctactcataat 45896148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 260
Target Start/End: Original strand, 22993989 - 22994168
Alignment:
Q  79 aaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatc 177  Q
    ||||||||| ||  ||||||||||||||||||||||| ||||||| ||  |||||||||| | ||| | || ||| ||  | |||| || || | |||||    
T  22993989 aaacattaagaaaaattgaattgaataaaactagattgatattcacaataaatagagttttacagcaacatgtttaaattacggtttca-cataatcatc 22994087  T
Q  178 tccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacat 260  Q
    | || ||||||||||| |||||||||||||||||||||  || ||||||||| |||| | |||  ||| ||||| ||||||||    
T  22994088 t-cagacctaatctctgagagatttagctactcataat-tgagttacaaatagcatattcaatggaagaattaaaacatacat 22994168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 7486370 - 7486317
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 236  Q
    |||||||||||||||||||||||||||||||||     ||||||||||||||||    
T  7486370 acctaatctctaagagatttagctactcataattgagtttacaaataacataat 7486317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 27091694 - 27091661
Alignment:
Q  183 acctaatctctaagagatttagctactcataata 216  Q
    ||||||||||||||||||||||||||||||||||    
T  27091694 acctaatctctaagagatttagctactcataata 27091661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 30690535 - 30690482
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 236  Q
    |||||||||||||||||||||||||||||||||   | ||||||||| ||||||    
T  30690535 acctaatctctaagagatttagctactcataattgaatttacaaatagcataat 30690482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 47051295 - 47051215
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaatt-acaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||||||||  || || ||||||| |||||| |||  ||| ||||| |||||||||||    
T  47051295 acctaatctctaagagatttagctactcataat-tgagttcacaaatagcataatcaatggaagaattaaaacatacataaa 47051215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 2873364 - 2873332
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  2873364 acctaatctctaagagatttagctactcataat 2873332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 3840316 - 3840284
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  3840316 acctaatctctaagagatttagctactcataat 3840284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 11190326 - 11190294
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  11190326 acctaatctctaagagatttagctactcataat 11190294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 20729041 - 20729073
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  20729041 acctaatctctaagagatttagctactcataat 20729073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 24125299 - 24125267
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  24125299 acctaatctctaagagatttagctactcataat 24125267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 24128576 - 24128544
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  24128576 acctaatctctaagagatttagctactcataat 24128544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 25584487 - 25584455
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  25584487 acctaatctctaagagatttagctactcataat 25584455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 32287718 - 32287750
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  32287718 acctaatctctaagagatttagctactcataat 32287750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 41976815 - 41976783
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  41976815 acctaatctctaagagatttagctactcataat 41976783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 43926635 - 43926603
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  43926635 acctaatctctaagagatttagctactcataat 43926603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 47054725 - 47054693
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  47054725 acctaatctctaagagatttagctactcataat 47054693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 50461943 - 50461975
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  50461943 acctaatctctaagagatttagctactcataat 50461975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 54723541 - 54723509
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  54723541 acctaatctctaagagatttagctactcataat 54723509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 54834164 - 54834200
Alignment:
Q  48 tctttttcatcatcatcttcatcaaatctataaacat 84  Q
    ||||||||||||| |||||||||||||||||||||||    
T  54834164 tctttttcatcattatcttcatcaaatctataaacat 54834200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 30220403 - 30220456
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacga-attacaaataacataat 236  Q
    ||||||| ||||||||||||||||||||||||| |||  ||||||||||||||||    
T  30220403 acctaatatctaagagatttagctactcataat-cgagtttacaaataacataat 30220456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 84
Target Start/End: Original strand, 33389408 - 33389438
Alignment:
Q  54 tcatcatcatcttcatcaaatctataaacat 84  Q
    |||||||||||||||||||||||||||||||    
T  33389408 tcatcatcatcttcatcaaatctataaacat 33389438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 6030506 - 6030457
Alignment:
Q  287 accacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaa 336  Q
    |||||||||| |||||| |||||||||  |||| ||||||||||||||||    
T  6030506 accacctctttagtcttttgctctcaagttcgtgttttagatctccaaaa 6030457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 215
Target Start/End: Complemental strand, 22370252 - 22370117
Alignment:
Q  79 aaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatc 177  Q
    ||||||||| ||| ||||||||||||| || |||||| |||||||  || ||| |||||||| | | | || ||| ||  ||| ||||| || | |||||    
T  22370252 aaacattaagaacaattgaattgaatataaatagattgatattcacgagaaattgagtttcacaacaacatgtttaaattagggttaca-cataatcatc 22370154  T
Q  178 tccaaacctaatctctaagagatttagctactcataat 215  Q
    || | |||||||||||||||||||| ||||||||||||    
T  22370153 tc-agacctaatctctaagagattttgctactcataat 22370117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 153
Target Start/End: Original strand, 282495 - 282555
Alignment:
Q  93 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatattt 153  Q
    ||||||||||||||||||||||| ||| | |||| |||| ||||||||  |||| ||||||    
T  282495 attgaattgaataaaactagatttataattataatcaattgagtttcacggccacatattt 282555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 487 - 519
Target Start/End: Original strand, 7167804 - 7167836
Alignment:
Q  487 tgaaattgtgtcacgatgccaaaatcatgtcac 519  Q
    |||||||||||||||||||||||||| ||||||    
T  7167804 tgaaattgtgtcacgatgccaaaatcgtgtcac 7167836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 17040416 - 17040448
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    ||||||||||||||||||||| |||||||||||    
T  17040416 acctaatctctaagagatttaactactcataat 17040448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 19301899 - 19301931
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    ||||||||||||||||| |||||||||||||||    
T  19301899 acctaatctctaagagagttagctactcataat 19301931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 19305083 - 19305115
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    ||||||||||||||||| |||||||||||||||    
T  19305083 acctaatctctaagagagttagctactcataat 19305115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 22783392 - 22783360
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    ||||||||||||||||||||||||||| |||||    
T  22783392 acctaatctctaagagatttagctacttataat 22783360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 22787756 - 22787724
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    ||||||||||||||||||||||||||| |||||    
T  22787756 acctaatctctaagagatttagctacttataat 22787724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 28008464 - 28008496
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||| ||||||||||||||||||||||||||    
T  28008464 acctaaactctaagagatttagctactcataat 28008496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 52309952 - 52309984
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    ||||||| |||||||||||||||||||||||||    
T  52309952 acctaatatctaagagatttagctactcataat 52309984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 93 - 358
Target Start/End: Complemental strand, 31514 - 31249
Alignment:
Q  93 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctccaaacctaatct 191  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||| | ||| || ||||||||| | |||||||||||||||||| | |||||||||    
T  31514 attgaattgaataaaactagattgatattcataagcaatatagtttcacaaccacatgtttcaaacatgattacatcagattcatctc-agacctaatct 31416  T
Q  192 ctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagtgggatggaatgaccac 291  Q
    |||||||||||| ||||||||  || | |||| ||||||||  || |||| |||||| || ||||||||||| ||||||||||| ||| |||||| ||||    
T  31415 ctaagagatttaactactcattgtatggattaaaaataacaacatcaattgaagcataaaaacatacataaactgactatgagttggaaggaatggccac 31316  T
Q  292 ctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttatttctgaaa 358  Q
    |||||||||||| ||||||||||||     || |||||||| ||||| |||||||||||||||||||    
T  31315 ctcttcagtcttttgctctcaaaattacgcttcagatctcctaaattcagaacccttatttctgaaa 31249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 2e-60; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 93 - 358
Target Start/End: Original strand, 37907563 - 37907828
Alignment:
Q  93 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctccaaacctaatct 191  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||| | ||| || ||||||||| | |||||||||||||||||| | |||||||||    
T  37907563 attgaattgaataaaactagattgatattcataagcaatatagtttcacaaccacatgtttcaaacatgattacatcagattcatctc-agacctaatct 37907661  T
Q  192 ctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagtgggatggaatgaccac 291  Q
    |||||||||||| ||||||||  || | |||| ||||||||  || |||| |||||| || ||||||||||| ||||||||||| ||| |||||| ||||    
T  37907662 ctaagagatttaactactcattgtatggattaaaaataacaacatcaattgaagcataaaaacatacataaactgactatgagttggaaggaatggccac 37907761  T
Q  292 ctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttatttctgaaa 358  Q
    |||||||||||| ||||||||||||     || |||||||| ||||| |||||||||||||||||||    
T  37907762 ctcttcagtcttttgctctcaaaattacgcttcagatctcctaaattcagaacccttatttctgaaa 37907828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 93 - 263
Target Start/End: Complemental strand, 7635451 - 7635281
Alignment:
Q  93 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctccaaacctaatct 191  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||||| | | | || ||| ||  ||| |||||||||| ||||||| | |||||||||    
T  7635451 attgaattgaataaaactagattgatattcataagaaatagagtttcacatcaacatgtttaaattagggttacatcagaatcatctc-acacctaatct 7635353  T
Q  192 ctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||| |||||||||||     ||||||||| |||||| ||| |||| ||||| |||||||||||    
T  7635352 ctaagagatttaactactcataattgagtttacaaatagcataatcaatgaaagaattaaaacatacataaa 7635281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 82 - 263
Target Start/End: Original strand, 27332077 - 27332258
Alignment:
Q  82 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 180  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| ||| |||| ||||||||||| | || ||| ||  | |||||||||||| |||| | |    
T  27332077 cattaataacaattgaattgaataaaactagattgatattcacaagaaataaagtttcatagcaacatgtttaaattagggttacatcagaatcat-ttc 27332175  T
Q  181 aaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    | ||||||||| |||||||||||||||||||||||     ||||| ||| |||||| ||| |||| ||||| |||||||||||    
T  27332176 agacctaatctttaagagatttagctactcataattgagtttacagatagcataatcaatgaaagaattaaaacatacataaa 27332258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 93 - 215
Target Start/End: Original strand, 34066758 - 34066880
Alignment:
Q  93 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctccaaacctaatct 191  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||||| | | | || ||| ||  | |||||||||| | |||||| || |||||||||    
T  34066758 attgaattgaataaaactagattgatattcacaagaaatagagtttcacaacaacatgtttaaattagggttacatcaaaatcatct-catacctaatct 34066856  T
Q  192 ctaagagatttagctactcataat 215  Q
    ||||||||||||||||||||||||    
T  34066857 ctaagagatttagctactcataat 34066880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 83 - 236
Target Start/End: Original strand, 34732667 - 34732819
Alignment:
Q  83 attaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcagattcatctcca 181  Q
    ||||| ||| |||||||||||||||| ||||||||  ||||| ||   ||||||||||| ||| | |||||||||   ||||||| |||| ||||||| |    
T  34732667 attaagaacaattgaattgaataaaaactagattatcattcacaatagatagagtttcacagcaacatatttcaatagggttaca-cagaatcatctc-a 34732764  T
Q  182 aacctaatctctaagagatttagctactcataatacga-attacaaataacataat 236  Q
      |||||||||||| ||||||||||||||||||| |||  ||||||||||||||||    
T  34732765 ggcctaatctctaatagatttagctactcataat-cgagtttacaaataacataat 34732819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 169 - 263
Target Start/End: Original strand, 6071348 - 6071441
Alignment:
Q  169 agattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  6071348 agattcatctc-agacctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 6071441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 27536693 - 27536773
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| ||| |||  ||||| |||||||||||    
T  27536693 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatgaaaaaattaaaacatacataaa 27536773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 31697347 - 31697383
Alignment:
Q  48 tctttttcatcatcatcttcatcaaatctataaacat 84  Q
    |||||||||||||||||||||||||||||||||||||    
T  31697347 tctttttcatcatcatcttcatcaaatctataaacat 31697383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 50124425 - 50124389
Alignment:
Q  48 tctttttcatcatcatcttcatcaaatctataaacat 84  Q
    |||||||||||||||||||||||||||||||||||||    
T  50124425 tctttttcatcatcatcttcatcaaatctataaacat 50124389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 20398569 - 20398537
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  20398569 acctaatctctaagagatttagctactcataat 20398537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 21018873 - 21018905
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  21018873 acctaatctctaagagatttagctactcataat 21018905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 23022331 - 23022363
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  23022331 acctaatctctaagagatttagctactcataat 23022363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 28110773 - 28110741
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  28110773 acctaatctctaagagatttagctactcataat 28110741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 31204554 - 31204522
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  31204554 acctaatctctaagagatttagctactcataat 31204522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 37184271 - 37184303
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  37184271 acctaatctctaagagatttagctactcataat 37184303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 41058709 - 41058741
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  41058709 acctaatctctaagagatttagctactcataat 41058741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 45961152 - 45961184
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  45961152 acctaatctctaagagatttagctactcataat 45961184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 84
Target Start/End: Original strand, 50123939 - 50123970
Alignment:
Q  53 ttcatcatcatcttcatcaaatctataaacat 84  Q
    ||||||||||||||||||||||||||||||||    
T  50123939 ttcatcatcatcttcatcaaatctataaacat 50123970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 84
Target Start/End: Complemental strand, 24509280 - 24509250
Alignment:
Q  54 tcatcatcatcttcatcaaatctataaacat 84  Q
    |||||||||||||||||||||||||||||||    
T  24509280 tcatcatcatcttcatcaaatctataaacat 24509250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 213
Target Start/End: Complemental strand, 45941132 - 45941102
Alignment:
Q  183 acctaatctctaagagatttagctactcata 213  Q
    |||||||||||||||||||||||||||||||    
T  45941132 acctaatctctaagagatttagctactcata 45941102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 84
Target Start/End: Original strand, 52750389 - 52750419
Alignment:
Q  54 tcatcatcatcttcatcaaatctataaacat 84  Q
    |||||||||||||||||||||||||||||||    
T  52750389 tcatcatcatcttcatcaaatctataaacat 52750419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 11668433 - 11668465
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||| ||||||    
T  11668433 acctaatctctaagagatttagctacacataat 11668465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 82 - 359
Target Start/End: Original strand, 48709 - 48986
Alignment:
Q  82 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacag-gttacatcagattcatctcc 180  Q
    |||||| ||| ||||||||||||||||||||||| ||||||| | | ||||||||| || |   | || | |||| ||| || ||||||||||||||||     
T  48709 cattaagaacaattgaattgaataaaactagattgatattcacatgaaatagagttgcacattaacatgtctcaaccagagtaacatcagattcatctc- 48807  T
Q  181 aaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagtgggat 280  Q
    ||||||||||||||||||||||||| |||||||||   ||||||||||| |||||| |||  ||| ||||| ||||||||||| |||||| |||| ||||    
T  48808 aaacctaatctctaagagatttagccactcataattgtaattacaaatagcataatcaatggaagaattaaaacatacataaactgactacgagttggat 48907  T
Q  281 ggaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttatttctgaaac 359  Q
    || ||| |||||||||||||||| |||||||||||| |   ||| | |||||||||||  |||||||| ||||||||||    
T  48908 gggatggccacctcttcagtcttttgctctcaaaattgcgctttcggtctccaaaatttcgaacccttgtttctgaaac 48986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 81 - 354
Target Start/End: Original strand, 35521671 - 35521941
Alignment:
Q  81 acattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacag-gttacatcagattcatctc 179  Q
    ||||||| ||| |||||||||| |||||||||||| |||  || | | |||||||||||| | | | ||  ||||||||  |||||||||||||||||||    
T  35521671 acattaagaacaattgaattgagtaaaactagattgatacccacatgaaatagagtttcacaacaacatggttcaaacaaagttacatcagattcatctc 35521770  T
Q  180 caaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagtggga 279  Q
      |||||||||| ||| |||||||||||||||||||   ||||||||||| |||||| |||| |||||| || ||||||| ||    ||||| ||| |||    
T  35521771 ataacctaatctttaatagatttagctactcataattgaaattacaaatagcataatcaatttaagcataaaaacatacacaa----actattagttgga 35521866  T
Q  280 tggaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttatttct 354  Q
    |||| |||||||| ||| |||  | |||||||||||||||  || ||||||||||||||  ||||||||| ||||    
T  35521867 tggattgaccaccactttagttctttgctctcaaaatcgtgcttcagatctccaaaattccgaacccttacttct 35521941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 8892882 - 8892843
Alignment:
Q  48 tctttttcatcatcatcttcatcaaatctataaacattaa 87  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8892882 tctttttcatcatcatcttcatcaaatctataaacattaa 8892843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 346
Target Start/End: Complemental strand, 11187694 - 11187611
Alignment:
Q  263 attgactatgagtgggatggaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaaccc 346  Q
    |||||||||||||  | ||||||| |||||||||||||||||||||||||||| | |  || | |||||||||||| |||||||    
T  11187694 attgactatgagtttggtggaatggccacctcttcagtcttgtgctctcaaaagcatgcttcaaatctccaaaattcagaaccc 11187611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 236
Target Start/End: Complemental strand, 22630627 - 22630486
Alignment:
Q  94 ttgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcagattcatctccaaacctaatctc 192  Q
    ||||||||||||||| ||||||||  ||||| ||  |||||||||||| ||| | || ||||||  ||||||||| ||| ||||||| | |||||| |||    
T  22630627 ttgaattgaataaaaactagattatcattcacaataaatagagtttcacagcaacatgtttcaattaggttacat-agaatcatctc-agacctaacctc 22630530  T
Q  193 taagagatttagctactcataatacgaattacaaataacataat 236  Q
    ||| |||||||||||||||||||     ||||||||||||||||    
T  22630529 taatagatttagctactcataatggtgtttacaaataacataat 22630486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 31427938 - 31428030
Alignment:
Q  170 gattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||| | |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  31427938 gattcatctc-agacctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 31428030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 9966712 - 9966792
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||||||||     ||||| |||||||||| ||| |||| ||||| | |||||||||    
T  9966712 acctaatctctaagagatttagctactcataattgagtttacatataacataatcaatgaaagaattaaaatatacataaa 9966792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 33310363 - 33310283
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||||||||     |||||||||||||||| |||  ||  ||||| |||||||||||    
T  33310363 acctaatctctaagagatttagctactcataattgagtttacaaataacataatcaatggaaaaattaaaacatacataaa 33310283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 45453571 - 45453491
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  45453571 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 45453491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 45456858 - 45456778
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  45456858 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 45456778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 12602415 - 12602376
Alignment:
Q  48 tctttttcatcatcatcttcatcaaatctataaacattaa 87  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  12602415 tctttttcatcattatcttcatcaaatctataaacattaa 12602376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 43723398 - 43723345
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 236  Q
    |||||||||||||||||||||||||||||||||   | ||||||||| ||||||    
T  43723398 acctaatctctaagagatttagctactcataattgaatttacaaatagcataat 43723345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 8888332 - 8888300
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  8888332 acctaatctctaagagatttagctactcataat 8888300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 9185832 - 9185864
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  9185832 acctaatctctaagagatttagctactcataat 9185864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 9189061 - 9189093
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  9189061 acctaatctctaagagatttagctactcataat 9189093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 10708363 - 10708399
Alignment:
Q  48 tctttttcatcatcatcttcatcaaatctataaacat 84  Q
    ||||||||||||| |||||||||||||||||||||||    
T  10708363 tctttttcatcataatcttcatcaaatctataaacat 10708399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 11348304 - 11348336
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  11348304 acctaatctctaagagatttagctactcataat 11348336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 13972302 - 13972334
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  13972302 acctaatctctaagagatttagctactcataat 13972334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 22020765 - 22020733
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  22020765 acctaatctctaagagatttagctactcataat 22020733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 25960097 - 25960129
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  25960097 acctaatctctaagagatttagctactcataat 25960129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 27266485 - 27266453
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  27266485 acctaatctctaagagatttagctactcataat 27266453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 30190033 - 30190001
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  30190033 acctaatctctaagagatttagctactcataat 30190001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 38015215 - 38015183
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  38015215 acctaatctctaagagatttagctactcataat 38015183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 40781169 - 40781137
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  40781169 acctaatctctaagagatttagctactcataat 40781137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 42369119 - 42369151
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  42369119 acctaatctctaagagatttagctactcataat 42369151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 6298183 - 6298117
Alignment:
Q  162 ttacatcagattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaata 229  Q
    |||||||| ||||||||| | || ||||| ||| || |||||||||||||||||| ||||||||||||    
T  6298183 ttacatcacattcatctctagacataatccctagga-atttagctactcataataggaattacaaata 6298117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 213
Target Start/End: Complemental strand, 5105423 - 5105393
Alignment:
Q  183 acctaatctctaagagatttagctactcata 213  Q
    |||||||||||||||||||||||||||||||    
T  5105423 acctaatctctaagagatttagctactcata 5105393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 186 - 216
Target Start/End: Complemental strand, 24234789 - 24234759
Alignment:
Q  186 taatctctaagagatttagctactcataata 216  Q
    |||||||||||||||||||||||||||||||    
T  24234789 taatctctaagagatttagctactcataata 24234759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 31430104 - 31430178
Alignment:
Q  189 tctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  31430104 tctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 31430178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 213
Target Start/End: Original strand, 43208298 - 43208328
Alignment:
Q  183 acctaatctctaagagatttagctactcata 213  Q
    |||||||||||||||||||||||||||||||    
T  43208298 acctaatctctaagagatttagctactcata 43208328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 24238064 - 24238031
Alignment:
Q  183 acctaatctctaagagatttagctactcataata 216  Q
    ||||||||||||| ||||||||||||||||||||    
T  24238064 acctaatctctaaaagatttagctactcataata 24238031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 215
Target Start/End: Original strand, 37280089 - 37280117
Alignment:
Q  187 aatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||    
T  37280089 aatctctaagagatttagctactcataat 37280117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 83 - 246
Target Start/End: Original strand, 563530 - 563692
Alignment:
Q  83 attaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcagattcatctccaa 182  Q
    ||||| ||| ||| ||||||||||||||| ||||||||||| | |||||||||||||| | ||| || ||||||||||  ||||||||| || |||||||    
T  563530 attaagaacaattaaattgaataaaactatattaatattcacatgcaatagagtttcacaaccacatgtttcaaacagtctacatcagaatcgtctccaa 563629  T
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagc 246  Q
    ||||||||||| || ||||||| ||||||||||   |||||||||||||||||| |||| ||||    
T  563630 acctaatctct-agtgatttagatactcataatgaaaattacaaataacataatcaattgaagc 563692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 93 - 270
Target Start/End: Complemental strand, 31575222 - 31575045
Alignment:
Q  93 attgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctccaaacctaatct 191  Q
    |||||||| |||||||||||||| ||||||| | | |||||||||||| | | | ||  |||||| | ||||||||||||||||||| || ||||| |||    
T  31575222 attgaattaaataaaactagattgatattcacatgaaatagagtttcacaacaacatggttcaaatagggttacatcagattcatct-cagacctactct 31575124  T
Q  192 ctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgacta 270  Q
     ||||||||||| | |||||||||   |||||||||||||||||| |||  ||  ||||| ||||||||| ||||||||    
T  31575123 ttaagagatttaacaactcataattgaaattacaaataacataatcaatggaataattaaaacatacatatattgacta 31575045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 18765947 - 18766044
Alignment:
Q  82 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatct 178  Q
    |||||||||| |||||||||||||||||||||||||||| || |||||||| ||||||| ||||| || ||||||| ||| |||| ||||||||||||    
T  18765947 cattaaaaacaattgaattgaataaaactagattaatatgcacaagcaataaagtttcacagccacatgtttcaaataggattacctcagattcatct 18766044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 21914937 - 21914818
Alignment:
Q  82 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 180  Q
    |||||| ||| ||||||||||||||||||||||| || |||| ||  |||||||||||||||| | ||  |||||  | |||||||||||| |||||| |    
T  21914937 cattaagaacaattgaattgaataaaactagattgattttcacaa-taatagagtttcatagcaacatggttcaattagggttacatcagaatcatct-c 21914840  T
Q  181 aaacctaatctctaagagattt 202  Q
    | ||||||||||||||||||||    
T  21914839 agacctaatctctaagagattt 21914818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 17664267 - 17664187
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| ||| |||| ||||| |||||||||||    
T  17664267 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatgaaagaattaaaacatacataaa 17664187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 13824467 - 13824428
Alignment:
Q  48 tctttttcatcatcatcttcatcaaatctataaacattaa 87  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13824467 tctttttcatcatcatcttcatcaaatctataaacattaa 13824428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 24041971 - 24042010
Alignment:
Q  48 tctttttcatcatcatcttcatcaaatctataaacattaa 87  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24041971 tctttttcatcatcatcttcatcaaatctataaacattaa 24042010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 269 - 358
Target Start/End: Original strand, 18766058 - 18766147
Alignment:
Q  269 tatgagtgggatggaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttatttctgaaa 358  Q
    ||||||| |||||| ||| |||||||||||||||| |||||||||||| |   || | |||||||||||| | ||||||| |||||||||    
T  18766058 tatgagttggatgggatggccacctcttcagtcttctgctctcaaaattgcgcttcatatctccaaaattcaaaacccttgtttctgaaa 18766147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 7624817 - 7624737
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  7624817 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 7624737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 20055489 - 20055409
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||||||||     |||||||||  ||||| ||| |||| ||||| |||||||||||    
T  20055489 acctaatctctaagagatttagctactcataattgagtttacaaatagaataatcaatgaaagaattaaaacatacataaa 20055409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 38385102 - 38385138
Alignment:
Q  48 tctttttcatcatcatcttcatcaaatctataaacat 84  Q
    |||||||||||||||||||||||||||||||||||||    
T  38385102 tctttttcatcatcatcttcatcaaatctataaacat 38385138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 82 - 215
Target Start/End: Original strand, 41877071 - 41877204
Alignment:
Q  82 cattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctc 179  Q
    |||||||||| |||||||||||||||| |||||||   ||||| ||  |||||||||||| ||| | ||  |||||  ||| |||||  ||| |||||||    
T  41877071 cattaaaaacaattgaattgaataaaaactagattgtcattcacaataaatagagtttcacagcaacatggttcaattagggttacaa-agaatcatctc 41877169  T
Q  180 caaacctaatctctaagagatttagctactcataat 215  Q
     | |||||||||||||||||||||||||||||||||    
T  41877170 -agacctaatctctaagagatttagctactcataat 41877204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 26896011 - 26896064
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacga-attacaaataacataat 236  Q
    ||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  26896011 acctaatctctaagagatttagctactcataat-cgagtttacaaataacataat 26896064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 26753109 - 26753162
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 236  Q
    |||||||||||||||||||||||||||||||||   | ||||||||| ||||||    
T  26753109 acctaatctctaagagatttagctactcataattgaatttacaaatatcataat 26753162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 7270731 - 7270699
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  7270731 acctaatctctaagagatttagctactcataat 7270699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 14016546 - 14016578
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  14016546 acctaatctctaagagatttagctactcataat 14016578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 18952408 - 18952376
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  18952408 acctaatctctaagagatttagctactcataat 18952376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 22129980 - 22129948
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  22129980 acctaatctctaagagatttagctactcataat 22129948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 30066057 - 30066025
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  30066057 acctaatctctaagagatttagctactcataat 30066025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 33551836 - 33551804
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  33551836 acctaatctctaagagatttagctactcataat 33551804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 34831478 - 34831446
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  34831478 acctaatctctaagagatttagctactcataat 34831446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 41306934 - 41306966
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  41306934 acctaatctctaagagatttagctactcataat 41306966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 215
Target Start/End: Original strand, 18239900 - 18239935
Alignment:
Q  180 caaacctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||| |||||||||||    
T  18239900 caaacctaatctctaagagatttaactactcataat 18239935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 84
Target Start/End: Complemental strand, 38385622 - 38385592
Alignment:
Q  54 tcatcatcatcttcatcaaatctataaacat 84  Q
    |||||||||||||||||||||||||||||||    
T  38385622 tcatcatcatcttcatcaaatctataaacat 38385592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 4099929 - 4099961
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    ||||||||||||||||||||| |||||||||||    
T  4099929 acctaatctctaagagatttatctactcataat 4099961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 18032173 - 18032141
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    ||||||||||||||||||||||||| |||||||    
T  18032173 acctaatctctaagagatttagctattcataat 18032141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 82 - 350
Target Start/End: Complemental strand, 24917998 - 24917731
Alignment:
Q  82 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacaggt-tacatcagattcatctcc 180  Q
    |||||| ||| |||| |||||||||||||| ||||||||||| | |||||||||||||| ||| | |||||||||||| || |||||  || ||||||||    
T  24917998 cattaagaacaattggattgaataaaactaaattaatattcacatgcaatagagtttcacagcgacatatttcaaacaagtctacatacgaatcatctcc 24917899  T
Q  181 aaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagtgggat 280  Q
    | ||||||||| |  | |||||||| |||| ||||   |||||  ||||||||||| |  | ||||||||| ||||||| | || |||||| ||| ||||    
T  24917898 agacctaatctat-ggtgatttagccactcgtaatgaaaattagtaataacataatcatctgaagcattaaaacatacaaagatggactataagttggat 24917800  T
Q  281 ggaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaacccttat 350  Q
    |||| ||||||||||| ||||||   |||||||||||||  || | |||||||||||| | |||||||||    
T  24917799 ggaa-gaccacctctttagtcttccactctcaaaatcgtgcttcaaatctccaaaattcaaaacccttat 24917731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 83 - 348
Target Start/End: Complemental strand, 2090408 - 2090144
Alignment:
Q  83 attaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaacaggt-tacatcagattcatctcca 181  Q
    ||||| ||| |||||||||||||| |||||||||||| || ||  || |||||||||| | ||| |||||||||||| |  |||||||   |||||||||    
T  2090408 attaagaacaattgaattgaataagactagattaataatcttataca-tagagtttcacaaccacatatttcaaacaagcctacatcaagatcatctcca 2090310  T
Q  182 aacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgactatgagtgggatg 281  Q
     || ||||||||||  ||||||||||  ||||||   |||||||||||||| ||| || | ||||||||| | |||||   || ||||||||||  | ||    
T  2090309 gacgtaatctctaat-gatttagctatacataatgaaaattacaaataacacaatcaaatgaagcattaaaatatacaaggatcgactatgagtttggtg 2090211  T
Q  282 gaatgaccacctcttcagtcttgtgctctcaaaatcgtattttagatctccaaaattaagaaccctt 348  Q
    ||||| |||||||||||||||| | |||||||||||||  || ||||| |||||||| |||||||||    
T  2090210 gaatggccacctcttcagtcttatactctcaaaatcgtgcttcagatcgccaaaatttagaaccctt 2090144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 14683856 - 14683936
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| ||| |||| ||||| |||||||||||    
T  14683856 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaataaaagaattaaaacatacataaa 14683936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 6603172 - 6603080
Alignment:
Q  170 gattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||| | |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  6603172 gattcatctc-agacctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 6603080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 82 - 215
Target Start/End: Complemental strand, 7227330 - 7227197
Alignment:
Q  82 cattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcatctc 179  Q
    |||||| ||| |||||||||||||||| ||| |||   ||||| ||  |||||||||||||||| | || ||||||  ||| ||||| |||| ||||||     
T  7227330 cattaagaacaattgaattgaataaaaactaaattgtcattcacaataaatagagtttcatagcaacatgtttcaattagggttaca-cagaatcatctt 7227232  T
Q  180 caaacctaatctctaagagatttagctactcataat 215  Q
     | |||||||||||||||||||||||||||||||||    
T  7227231 -agacctaatctctaagagatttagctactcataat 7227197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 160 - 215
Target Start/End: Original strand, 18562923 - 18562977
Alignment:
Q  160 ggttacatcagattcatctccaaacctaatctctaagagatttagctactcataat 215  Q
    |||||||||||| ||||||| | ||||||||||||||||||||||||||| |||||    
T  18562923 ggttacatcagaatcatctc-agacctaatctctaagagatttagctacttataat 18562977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 11398438 - 11398516
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacata 261  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||    
T  11398438 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacata 11398516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 9405959 - 9405927
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  9405959 acctaatctctaagagatttagctactcataat 9405927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 9865139 - 9865171
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  9865139 acctaatctctaagagatttagctactcataat 9865171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 14682818 - 14682782
Alignment:
Q  48 tctttttcatcatcatcttcatcaaatctataaacat 84  Q
    ||||||||||||| |||||||||||||||||||||||    
T  14682818 tctttttcatcattatcttcatcaaatctataaacat 14682782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 17730516 - 17730484
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  17730516 acctaatctctaagagatttagctactcataat 17730484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 30474991 - 30474955
Alignment:
Q  48 tctttttcatcatcatcttcatcaaatctataaacat 84  Q
    ||||||||||||||||||| |||||||||||||||||    
T  30474991 tctttttcatcatcatctttatcaaatctataaacat 30474955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 84
Target Start/End: Original strand, 30474514 - 30474545
Alignment:
Q  53 ttcatcatcatcttcatcaaatctataaacat 84  Q
    ||||||||||||||||||||||||||||||||    
T  30474514 ttcatcatcatcttcatcaaatctataaacat 30474545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 13842355 - 13842262
Alignment:
Q  169 agattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    ||||||||||| | ||||||||||||| |||||||||||| ||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  13842355 agattcatctc-agacctaatctctaatagatttagctacgcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 13842262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 14682127 - 14682161
Alignment:
Q  50 tttttcatcatcatcttcatcaaatctataaacat 84  Q
    ||||||||||| |||||||||||||||||||||||    
T  14682127 tttttcatcattatcttcatcaaatctataaacat 14682161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 16956160 - 16956194
Alignment:
Q  50 tttttcatcatcatcttcatcaaatctataaacat 84  Q
    ||||||||||| |||||||||||||||||||||||    
T  16956160 tttttcatcattatcttcatcaaatctataaacat 16956194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 16165462 - 16165418
Alignment:
Q  170 gattcatctccaaacctaatctctaagagatttagctactcataat 215  Q
    |||||||||| | ||||||||||||||||||||| |||||||||||    
T  16165462 gattcatctc-agacctaatctctaagagatttaactactcataat 16165418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 25443234 - 25443267
Alignment:
Q  51 ttttcatcatcatcttcatcaaatctataaacat 84  Q
    |||||||||| |||||||||||||||||||||||    
T  25443234 ttttcatcataatcttcatcaaatctataaacat 25443267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 48645188 - 48645144
Alignment:
Q  170 gattcatctccaaacctaatctctaagagatttagctactcataat 215  Q
    |||||||||| | |||||||||||||||||||||||||| ||||||    
T  48645188 gattcatctc-agacctaatctctaagagatttagctacgcataat 48645144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 4596421 - 4596453
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||| ||||||    
T  4596421 acctaatctctaagagatttagctacacataat 4596453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 4695226 - 4695194
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    ||||||||||||| |||||||||||||||||||    
T  4695226 acctaatctctaaaagatttagctactcataat 4695194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 17238459 - 17238427
Alignment:
Q  52 tttcatcatcatcttcatcaaatctataaacat 84  Q
    ||||||||||||||||| |||||||||||||||    
T  17238459 tttcatcatcatcttcagcaaatctataaacat 17238427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 23225318 - 23225350
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    ||||||||||||||||||||| |||||||||||    
T  23225318 acctaatctctaagagatttaactactcataat 23225350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 23234471 - 23234503
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    ||||||||||||||||||||| |||||||||||    
T  23234471 acctaatctctaagagatttaactactcataat 23234503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 82 - 260
Target Start/End: Complemental strand, 9753 - 9575
Alignment:
Q  82 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttcatagccatatatttcaaaca-ggttacatcagattcatctcc 180  Q
    |||||| ||| ||||||||||||||||||| ||| ||||||||||| |||||||||||| ||| | || ||| ||  | || ||||||||| |||||| |    
T  9753 cattaagaacaattgaattgaataaaactatattgatattcataagaaatagagtttcacagcaacatgtttaaattagggatacatcagaatcatct-c 9655  T
Q  181 aaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacat 260  Q
    | ||||||| |||||||||||||||||||||||||     ||||||||| |||||| |||||||| ||||| | ||||||    
T  9654 agacctaatatctaagagatttagctactcataattgagtttacaaatagcataatcaattaaagaattaaaatatacat 9575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 89484 - 89404
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||| ||| ||||| |||||||||||    
T  89484 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaattgaagaattaaaacatacataaa 89404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 270
Target Start/End: Original strand, 7944352 - 7944439
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaattgacta 270  Q
    ||||||| ||||| ||||||| |||||||||||  | |||||||||||||| || |||| ||||||||| ||| ||||||| ||||||    
T  7944352 acctaatttctaatagatttaactactcataattggtattacaaataacatgatcaattgaagcattaaaacagacataaactgacta 7944439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 36711063 - 36711143
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  36711063 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 36711143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 22174319 - 22174363
Alignment:
Q  170 gattcatctccaaacctaatctctaagagatttagctactcataat 215  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  22174319 gattcatctc-agacctaatctctaagagatttagctactcataat 22174363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 12582720 - 12582688
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  12582720 acctaatctctaagagatttagctactcataat 12582688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 16953488 - 16953456
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  16953488 acctaatctctaagagatttagctactcataat 16953456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 18824802 - 18824834
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  18824802 acctaatctctaagagatttagctactcataat 18824834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 18826295 - 18826327
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  18826295 acctaatctctaagagatttagctactcataat 18826327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 2560301 - 2560248
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 236  Q
    |||||| ||||||||||||||||||||||||||     ||||||||||||||||    
T  2560301 acctaacctctaagagatttagctactcataatggtgtttacaaataacataat 2560248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 5614135 - 5614167
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    ||||||||||||||||||||||||||| |||||    
T  5614135 acctaatctctaagagatttagctacttataat 5614167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 5980720 - 5980752
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||| ||||||||||||||||||||||||    
T  5980720 acctaatccctaagagatttagctactcataat 5980752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 30784642 - 30784610
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||| ||||||||||||||||||||||||||    
T  30784642 acctaacctctaagagatttagctactcataat 30784610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 215
Target Start/End: Original strand, 38248811 - 38248839
Alignment:
Q  187 aatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||    
T  38248811 aatctctaagagatttagctactcataat 38248839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 118854 - 118931
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacga-attacaaataacataattaattaaagcattaacacatacat 260  Q
    ||||||||||||||||||||||||||||||||| |||  ||||||||| |||||| ||| |||  ||||||||||||||    
T  118854 acctaatctctaagagatttagctactcataat-cgagtttacaaatagcataatcaatgaaataattaacacatacat 118931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 34018085 - 34018220
Alignment:
Q  79 aaacattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacaggttacatcagattcatc 177  Q
    ||||||||| ||| |||||||||||||||| ||||| |   ||||| ||  |||||||||||| ||| | ||  |||||  ||||||||  ||| |||||    
T  34018085 aaacattaagaacaattgaattgaataaaaactagactgtcattcacaataaatagagtttcacagcaacatggttcaattaggttacaa-agaatcatc 34018183  T
Q  178 tccaaacctaatctctaagagatttagctactcataat 215  Q
    || | |||||||||||||||||||||||||||||||||    
T  34018184 tc-agacctaatctctaagagatttagctactcataat 34018220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 15405492 - 15405572
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  15405492 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 15405572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 56195241 - 56195161
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  56195241 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 56195161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 215
Target Start/End: Original strand, 27691447 - 27691583
Alignment:
Q  79 aaacattaaaaactattgaattgaataaaa-ctagattaatattcataagcaatagagtttcatagccatatatttcaaacagg-ttacatcagattcat 176  Q
    ||||||||| ||| |||||||||||||||| |||||||   ||||| ||  |||||||||||| ||| | ||  |||||  ||| |||||  ||| ||||    
T  27691447 aaacattaagaacaattgaattgaataaaaactagattgtcattcacaataaatagagtttcacagcaacatgattcaattagggttacaa-agaatcat 27691545  T
Q  177 ctccaaacctaatctctaagagatttagctactcataat 215  Q
    ||| | |||||||||||||||||||||||||||||||||    
T  27691546 ctc-agacctaatctctaagagatttagctactcataat 27691583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 37740069 - 37740126
Alignment:
Q  82 cattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttca 140  Q
    |||||| ||| ||||||||||||||||||||||||||||||| ||  ||||||||||||    
T  37740069 cattaacaacaattgaattgaataaaactagattaatattcacaa-taatagagtttca 37740126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 15436877 - 15436930
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataat 236  Q
    ||||||||||||||||||||||||||||||||| |   ||||||||| ||||||    
T  15436877 acctaatctctaagagatttagctactcataattcagtttacaaatagcataat 15436930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 33493998 - 33494059
Alignment:
Q  79 aaacattaaaaactattgaattgaataaaactagattaatattcataagcaatagagtttca 140  Q
    ||||||||| ||| |||||||| |||||||||| ||| ||||||||| | ||||||||||||    
T  33493998 aaacattaacaacaattgaattaaataaaactaaattgatattcatatgaaatagagtttca 33494059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 33926693 - 33926601
Alignment:
Q  170 gattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||| | |||||||||||||||||||||| ||||||||||     |||||||||  ||||| ||| |||| ||||| |||||||||||    
T  33926693 gattcatctc-agacctaatctctaagagatttagttactcataattgagtttacaaatagtataatcaatgaaagaattaaaacatacataaa 33926601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 34320313 - 34320357
Alignment:
Q  170 gattcatctccaaacctaatctctaagagatttagctactcataat 215  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  34320313 gattcatctc-agacctaatctctaagagatttagctactcataat 34320357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 44183642 - 44183609
Alignment:
Q  51 ttttcatcatcatcttcatcaaatctataaacat 84  Q
    ||||||||||||||||||||||||||||||||||    
T  44183642 ttttcatcatcatcttcatcaaatctataaacat 44183609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 170 - 215
Target Start/End: Original strand, 44809351 - 44809395
Alignment:
Q  170 gattcatctccaaacctaatctctaagagatttagctactcataat 215  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  44809351 gattcatctc-agacctaatctctaagagatttagctactcataat 44809395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 46955874 - 46955966
Alignment:
Q  170 gattcatctccaaacctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||| | ||||||||| |||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  46955874 gattcatctc-agacctaatctttaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 46955966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 50282754 - 50282721
Alignment:
Q  51 ttttcatcatcatcttcatcaaatctataaacat 84  Q
    ||||||||||||||||||||||||||||||||||    
T  50282754 ttttcatcatcatcttcatcaaatctataaacat 50282721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 15163906 - 15163874
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  15163906 acctaatctctaagagatttagctactcataat 15163874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 15430264 - 15430316
Alignment:
Q  184 cctaatctctaagagatttagctactcataatacgaattacaaataacataat 236  Q
    |||||||||||||||||||||||||||||||| |   ||||||||| ||||||    
T  15430264 cctaatctctaagagatttagctactcataattcagtttacaaatagcataat 15430316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 19820442 - 19820410
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  19820442 acctaatctctaagagatttagctactcataat 19820410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 19827204 - 19827172
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  19827204 acctaatctctaagagatttagctactcataat 19827172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 24150386 - 24150354
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  24150386 acctaatctctaagagatttagctactcataat 24150354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 27677462 - 27677494
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  27677462 acctaatctctaagagatttagctactcataat 27677494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 29324539 - 29324507
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  29324539 acctaatctctaagagatttagctactcataat 29324507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 38283896 - 38283928
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  38283896 acctaatctctaagagatttagctactcataat 38283928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 39501362 - 39501330
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  39501362 acctaatctctaagagatttagctactcataat 39501330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 40903491 - 40903523
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  40903491 acctaatctctaagagatttagctactcataat 40903523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 44164497 - 44164465
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  44164497 acctaatctctaagagatttagctactcataat 44164465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 45044604 - 45044640
Alignment:
Q  48 tctttttcatcatcatcttcatcaaatctataaacat 84  Q
    ||||||||||||||||||||||||||| |||||||||    
T  45044604 tctttttcatcatcatcttcatcaaatatataaacat 45044640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 48637219 - 48637187
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  48637219 acctaatctctaagagatttagctactcataat 48637187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 52006938 - 52006970
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  52006938 acctaatctctaagagatttagctactcataat 52006970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 52531343 - 52531375
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  52531343 acctaatctctaagagatttagctactcataat 52531375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 53094221 - 53094189
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  53094221 acctaatctctaagagatttagctactcataat 53094189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 214
Target Start/End: Original strand, 8877909 - 8877940
Alignment:
Q  183 acctaatctctaagagatttagctactcataa 214  Q
    ||||||||||||||||||||||||||||||||    
T  8877909 acctaatctctaagagatttagctactcataa 8877940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 183 - 213
Target Start/End: Original strand, 48415937 - 48415967
Alignment:
Q  183 acctaatctctaagagatttagctactcata 213  Q
    |||||||||||||||||||||||||||||||    
T  48415937 acctaatctctaagagatttagctactcata 48415967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 215
Target Start/End: Complemental strand, 56198565 - 56198535
Alignment:
Q  185 ctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||    
T  56198565 ctaatctctaagagatttagctactcataat 56198535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 8448950 - 8449027
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacat 260  Q
    |||||||||||||||||||||| ||||||||||     ||||||||| |||||| ||| |||  ||||| ||||||||    
T  8448950 acctaatctctaagagatttagttactcataattgagtttacaaatagcataataaatgaaataattaaaacatacat 8449027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 48014459 - 48014508
Alignment:
Q  187 aatctctaagagatttagctactcataatacgaattacaaataacataat 236  Q
    |||||||||||||||||||||||||||||     ||||||||||||||||    
T  48014459 aatctctaagagatttagctactcataattgagtttacaaataacataat 48014508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 12782619 - 12782587
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||| ||||||||||||||||||||||||||    
T  12782619 acctaacctctaagagatttagctactcataat 12782587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1684 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1684
Description:

Target: scaffold1684; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 48 - 128
Alignment:
Q  183 acctaatctctaagagatttagctactcataatacgaattacaaataacataattaattaaagcattaacacatacataaa 263  Q
    |||||||||||||||||||||||||||||||||     ||||||||| |||||| |||  ||| ||||| |||||||||||    
T  48 acctaatctctaagagatttagctactcataattgagtttacaaatagcataatcaatggaagaattaaaacatacataaa 128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 19113 - 19078
Alignment:
Q  180 caaacctaatctctaagagatttagctactcataat 215  Q
    ||||||||||||||||||||||||||||||||||||    
T  19113 caaacctaatctctaagagatttagctactcataat 19078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 5067 - 5035
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  5067 acctaatctctaagagatttagctactcataat 5035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 4196 - 4228
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  4196 acctaatctctaagagatttagctactcataat 4228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 84955 - 84923
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    |||||||||||||||||||||||||||||||||    
T  84955 acctaatctctaagagatttagctactcataat 84923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 4387 - 4415
Alignment:
Q  183 acctaatctctaagagatttagctactca 211  Q
    |||||||||||||||||||||||||||||    
T  4387 acctaatctctaagagatttagctactca 4415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 211
Target Start/End: Original strand, 8626 - 8654
Alignment:
Q  183 acctaatctctaagagatttagctactca 211  Q
    |||||||||||||||||||||||||||||    
T  8626 acctaatctctaagagatttagctactca 8654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 82 - 114
Alignment:
Q  183 acctaatctctaagagatttagctactcataat 215  Q
    ||||||| |||||||||||||||||||||||||    
T  82 acctaatttctaagagatttagctactcataat 114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University