View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2880_high_8 (Length: 580)

Name: NF2880_high_8

Description: NF2880

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2880_high_8

[»] scaffold0140 (5 HSPs)

Alignment Details

Target: scaffold0140 (Bit Score: 221; Significance: 1e-121; HSPs: 5)

Name: scaffold0140

Description:

Target: scaffold0140; HSP #1

Raw Score: 221; E-Value: 1e-121

Query Start/End: Original strand, 1 - 294

Target Start/End: Complemental strand, 37228 - 36933

Alignment:

Q	1	tggtccaaaggaagcaactcagaaccagccattgccac-atgactttattgatgacacaactcatgttattactggtttgttgaaatgtcaaaagaa-ta	98	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|
T	37228	tggtctaaaggaagcaactcagaaccagccattgccaccatcaaatt-ttgatgacacaactgatgttattactggtttgttgaaatgtcaaaagaaata	37130	T

Q	99	ttgcaaaagtt-caaggcaagaaggtcatgactgttgggggtccatcagagactcaagctgaagcaatgttgagagacctgaagatgcttccaccagagg	197	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	37129	ttgcaaaagttacaaggcaagaaggtcatgactgttgggggtccatcagagagtcaagctgaagcaatgttgagagacctgaagatgcttccaccagagg	37030	T

Q	198	aactagagaaggttacaagggagttggtgacaggcctagtgaattggaatgagaatattcacaagaacaaccaagcaaaaggaactgatggggagga	294	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	37029	aactagaaaaggttacaagggagttggtcacaggtctagtgaattggaatgagaatattcagaagaacaaccaagcaaaaggaactgatgggaagga	36933	T

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Target: scaffold0140; HSP #2

Raw Score: 107; E-Value: 2e-53

Query Start/End: Original strand, 365 - 526

Target Start/End: Complemental strand, 36900 - 36735

Alignment:

Q	365	ttaatgtttaagttttactttactttttggctatgaacctattagttgcactatgatgcttatgttgaaactgtaa-tttggttagc-acc--nnnnnnn	460	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|
T	36900	ttaatgtttaagttttactttactttttggctatgaacctattagttgcactatgatgcttatgttgaaactgtaattttggttagctaccttttttttt	36801	T

Q	461	nggatgttttggtgctattggacctgttatgttatgtttttgtacattatgatgtttgtaatgacc	526	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	36800	tggatgttttggtgctattggacctgttatgttatgttttggtacattatgatgttggtaatgacc	36735	T

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Target: scaffold0140; HSP #3

Raw Score: 75; E-Value: 3e-34

Query Start/End: Original strand, 502 - 580

Target Start/End: Complemental strand, 36704 - 36626

Alignment:

Q	502	gtacattatgatgtttgtaatgaccattttggtgttatgtcttggtacattatggtgttagtaatgaccattttggtgc	580	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36704	gtacattatggtgtttgtaatgaccattttggtgttatgtcttggtacattatggtgttagtaatgaccattttggtgc	36626	T

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Target: scaffold0140; HSP #4

Raw Score: 33; E-Value: 0.000000003

Query Start/End: Original strand, 543 - 579

Target Start/End: Complemental strand, 36707 - 36671

Alignment:

Q	543	ttggtacattatggtgttagtaatgaccattttggtg	579	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36707	ttggtacattatggtgtttgtaatgaccattttggtg	36671	T

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Target: scaffold0140; HSP #5

Raw Score: 30; E-Value: 0.0000002

Query Start/End: Original strand, 490 - 535

Target Start/End: Complemental strand, 36672 - 36627

Alignment:

Q	490	tgttatgtttttgtacattatgatgtttgtaatgaccattttggtg	535	Q
		\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36672	tgttatgtcttggtacattatggtgttagtaatgaccattttggtg	36627	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]