View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_high_9 (Length: 527)
Name: NF2880_high_9
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 17 - 515
Target Start/End: Original strand, 55374330 - 55374831
Alignment:
| Q |
17 |
aattacaaagggaacaatgtgctcatttaataggtgaggagaaggttgtgcatacattttaggagcttgacttaaacattttttgagtttagttaacatt |
116 |
Q |
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| T |
55374330 |
aattacaaagggaacaatgtgctcatttaataggtgaggagaaggttgtgcatacattttaggagcttgacttaaacattttttgagtttagttaacatt |
55374429 |
T |
|
| Q |
117 |
aaacgtggttgcacgagcttggttagttgacttactatacaatttcttaaactttgatacaaaagttatacttccannnnnnnnnnn---aaagtgttgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
55374430 |
aaacgtggttgcacgagcttggttagttgacttactatacaatttcttaaactttgatacaaaagttatacttccattttatttttttttaaagtggtgt |
55374529 |
T |
|
| Q |
214 |
gttattagaataaaatgatgatgattcaatggacataggaagttaattagtgtttacaatagaaagctcctcagaaatctatatatttggacggctttta |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55374530 |
gttattagaataaaatgatgatgattcaatggacataggaagttaattagtgtttacaatagaaagctcctcagaaatctatatatttggacggctttta |
55374629 |
T |
|
| Q |
314 |
agtaggacaagcacgtcttgtgaaattgtcatgcttggattcaatataataacttatatttaagtcaaaagctaagtaaaattagaatttagttctaaat |
413 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55374630 |
agtaggacaagcacgtcttgtgaaattctcatgcttggattcaatataataacttatatttaagtcaaaagctaagtaaaattagaatttagttttaaat |
55374729 |
T |
|
| Q |
414 |
atttaacaaatttgtcaattatgctagaagttacaatggagcctagtttagattaactttaattcgtttatgaaaacttatcaacttacataagtatata |
513 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55374730 |
atttaactaatttgtcaattatgctagaagttacaatggagcctaatttagattaactttaattcgtttatgaaaacttatcaacttacataagtatata |
55374829 |
T |
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| Q |
514 |
tt |
515 |
Q |
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| T |
55374830 |
tt |
55374831 |
T |
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