View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_low_13 (Length: 460)
Name: NF2880_low_13
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 17 - 452
Target Start/End: Complemental strand, 43574842 - 43574407
Alignment:
| Q |
17 |
aaaaagaagataatttaatttggattaccttaaattaatgtgtgcaggaatcaacaatcggagcggcatttttcacacaggttttgtctttaaatgaagc |
116 |
Q |
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||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43574842 |
aaaaataagataatttaatttgaattaccttaaatgaatgtgtgcaggaatcaacaatcggagccgcatttttcacacaggttttgtctttaaatgaagc |
43574743 |
T |
|
| Q |
117 |
cactgtgaagtttgatatatgggacacagcagggcaagaacgataccacagtttggctcccatgtattatcgtggctctgctgctgctatagttgtatat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43574742 |
cactgtgaagtttgatatatgggacacagcagggcaagaacgataccacagtttggctcccatgtattatcgtggctctgctgctgctatagttgtatat |
43574643 |
T |
|
| Q |
217 |
gacattacaagcatggtaactaaaatccactttataagtgatatttatggcagcaatttataggcaatcatttttatttagcttgtgatgattagttgtt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43574642 |
gacattacaagcatggtaactaaaatccactttataagtgatatttatggtagcaatttataggcaatcatttttatttagcttgtgatgattagttgtt |
43574543 |
T |
|
| Q |
317 |
tgaaatatgtacttgaaagcaaagaattttcgttcacatgacctgtcacgaagctgttcaataaagataacaataattgattgtcatgaatgatatataa |
416 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43574542 |
tgaaatatgtacttgaaagcaaagaattttcgttcgcatgacctgtcacgaagctgttcaataaagataacaataattgattgtcatgaatgatatataa |
43574443 |
T |
|
| Q |
417 |
tagaatgtgtaatgtttatgttattgcatctgtgct |
452 |
Q |
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| T |
43574442 |
tagaatgtgtaatgtttatgttattgcatccgtgct |
43574407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 62 - 185
Target Start/End: Complemental strand, 43920509 - 43920386
Alignment:
| Q |
62 |
aggaatcaacaatcggagcggcatttttcacacaggttttgtctttaaatgaagccactgtgaagtttgatatatgggacacagcagggcaagaacgata |
161 |
Q |
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||||| |||| || ||||| || ||||||||||| | || || ||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
43920509 |
aggaaccaaccataggagctgcttttttcacacaaatattatcattatctgaagccactgtgaagtttgacatatgggacacagcaggacaagaacgata |
43920410 |
T |
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| Q |
162 |
ccacagtttggctcccatgtatta |
185 |
Q |
| |
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|| ||||||||||| |||||||| |
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| T |
43920409 |
tcatagtttggctcctatgtatta |
43920386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 221
Target Start/End: Original strand, 28988414 - 28988577
Alignment:
| Q |
58 |
gtgcaggaatcaacaatcggagcggcatttttcacacaggttttgtctttaaatgaagccactgtgaagtttgatatatgggacacagcagggcaagaac |
157 |
Q |
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||||||||||||||||| || || ||||||||| | ||| || | ||||||| || || || || ||||| || ||||||||||||||||||||| |
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| T |
28988414 |
gtgcaggaatcaacaataggggcagcatttttctcgcagacattagcagtaaatgacgcaacggttaaatttgagatttgggacacagcagggcaagaaa |
28988513 |
T |
|
| Q |
158 |
gataccacagtttggctcccatgtattatcgtggctctgctgctgctatagttgtatatgacat |
221 |
Q |
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||||||| || ||||||||||||||||| | ||| | |||||||||||| |||| |||||||| |
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| T |
28988514 |
gataccatagcttggctcccatgtattacagaggcgcagctgctgctataattgtctatgacat |
28988577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 61 - 224
Target Start/End: Original strand, 32677450 - 32677613
Alignment:
| Q |
61 |
caggaatcaacaatcggagcggcatttttcacacaggttttgtctttaaatgaagccactgtgaagtttgatatatgggacacagcagggcaagaacgat |
160 |
Q |
| |
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|||||||||||||| || || ||||||||| | ||| ||| | ||||||| ||||| ||||| ||||| || |||||||||||||| ||||| ||| |
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| T |
32677450 |
caggaatcaacaataggggcagcatttttctcccagacgttggcagtaaatgacgccacagtgaaatttgagatttgggacacagcaggacaagagagat |
32677549 |
T |
|
| Q |
161 |
accacagtttggctcccatgtattatcgtggctctgctgctgctatagttgtatatgacattac |
224 |
Q |
| |
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|||| || || ||||||||||| ||| | ||| ||||||||||||| |||| ||||| ||||| |
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| T |
32677550 |
accatagcttagctcccatgtactatagaggcgctgctgctgctatcattgtctatgatattac |
32677613 |
T |
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