View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_low_14 (Length: 455)
Name: NF2880_low_14
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 42336619 - 42337045
Alignment:
| Q |
19 |
gttcactctcgttatcaaattgttgacatctttacaaagagacttacattgcaactttttgatgatcttagatatagtctcgactacgagggtgtattag |
118 |
Q |
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| T |
42336619 |
gttcactctcgttatcaaattgttgacatctttacaaagagacttacattgcaactttttgatgatcttagatatagtctcgactacaagggtgtattag |
42336718 |
T |
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| Q |
119 |
aataattattattaaaggaagtataccccaaaaataaaaattaccattaagaaaatcgatcacattggatacaacttatacctcaagaaacttggacctc |
218 |
Q |
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| T |
42336719 |
aataattattattaaaggaagtataccccaaaat--aaaattaccattaagaaaatcgatcacattggatacaacttatacctcaagaaacttggacctc |
42336816 |
T |
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| Q |
219 |
acggaattgcacctcatgaaacacatacatccaattataattcgnnnnnnnggagagggccaaatataattcttatatgcagtgctatttggcacgatat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42336817 |
acggaattgcacctcatgaaacacatacatccaattataattcgtttttttggagagggccaaatataattcttatatgcagtgctatttggcacgatat |
42336916 |
T |
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| Q |
319 |
aatttttgtcggaagcaaacaaagaaataagttgtccaacaaaaaagctggaaaagcatacaaagccaacacgtggccaaaatacacagagcggttgtgc |
418 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42336917 |
aatttttgtcggaagcgtacagagaaataagttgtccaacaaaaaagctggaaaagcatacaaagccaacacatggccaaaatacacagagcggttgtgc |
42337016 |
T |
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| Q |
419 |
atgattaacaaatgtaaatagttcatctc |
447 |
Q |
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| T |
42337017 |
atgattaacaaatgtaaataattcgtctc |
42337045 |
T |
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