View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_low_2 (Length: 762)
Name: NF2880_low_2
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 500 - 754
Target Start/End: Original strand, 32826829 - 32827083
Alignment:
| Q |
500 |
tagagaaagaaggcatttaaatttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaagaggttgggatctagtttc |
599 |
Q |
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| T |
32826829 |
tagagaaagaagacctttaaatttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaagaggttgggatctagtttc |
32826928 |
T |
|
| Q |
600 |
gatgcttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatgtcctcatctatca |
699 |
Q |
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| T |
32826929 |
gaggcttgttgtccttgtacagaatgccgagattttaagggaaaagtaatcccttctaataaaactctgtcaattgcagcaacaacgtcctcatctatca |
32827028 |
T |
|
| Q |
700 |
tagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttgcctttgct |
754 |
Q |
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| T |
32827029 |
tagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttgcctttgct |
32827083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 252 - 422
Target Start/End: Original strand, 32826639 - 32826805
Alignment:
| Q |
252 |
actatcgactggtgttgggtccatttgttgggtgtgtgcgcactttccttcaacgcttcattattttggccaatgtttttcttaaccgagtcgtgctcnn |
351 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32826639 |
actatcgactggtgttgggtccatttgttgggtgtatgcgcactttccttcaacgcttcattattttggccaatgtttttcttaaccgagtcgtgctctt |
32826738 |
T |
|
| Q |
352 |
nnnnnnncttccaaattgtcgagtttctcaaaatcctcacaatgttgttgagaaagctaacaacaacaccg |
422 |
Q |
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| T |
32826739 |
tttt----tttcaaattgtcgagtttctcaaaatcctcacaatgttgttgggaaagctaacaacaacaccg |
32826805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 384 - 746
Target Start/End: Complemental strand, 39737865 - 39737503
Alignment:
| Q |
384 |
atcctcacaatgttgttgagaaagctaacaacaacaccgccttgttctaattggtcagaggaaaacgcgtcagcactatcgtcaacgatttctttgactg |
483 |
Q |
| |
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|||||||||||||||||||||| | |||||||| ||||| |||||||||||||| ||||||||| || |||||| || |||||| |||| ||||||| |
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| T |
39737865 |
atcctcacaatgttgttgagaaggttaacaacagcaccgacttgttctaattggagagaggaaaatgcatcagcattagcgtcaattttttccttgactg |
39737766 |
T |
|
| Q |
484 |
tgttgaagtaaacttctaga-gaaagaaggcatttaaatttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaaga |
582 |
Q |
| |
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| T |
39737765 |
cgttgaaattaactt-tagaagtgagaccttctttaagtttttcaaccaagtctcctttaaaagcaatatcccttaattcctgaagaagttgctcaggga |
39737667 |
T |
|
| Q |
583 |
ggttgggatctagtttcgatgcttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaac |
682 |
Q |
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| |||||||| |||| || |||| ||||||| ||| ||||| | |||||||||| || ||||||||||| ||||||||||||||||||| |||| |
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| T |
39737666 |
gattgggatcccgttttgagtattctcgtccttggacagaatgctgggattttaaggaaagagtaatcccttccgataaaactctgtcaattgccgcaat |
39737567 |
T |
|
| Q |
683 |
aatgtcctcatctatcatagcatcaatttcttcaaagtctttgctgacaaactttgaagtgttg |
746 |
Q |
| |
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| T |
39737566 |
gacatcctcatctaccatagcatcaaattcttcagagtctatgctgactaattttgaagtgttg |
39737503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 515 - 752
Target Start/End: Original strand, 39856362 - 39856599
Alignment:
| Q |
515 |
tttaaatttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaagaggttgggatctagtttcgatgcttcttgtcct |
614 |
Q |
| |
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||||||||||||||||||||| |||||||| |||||||||||||||||| || ||||||||| || ||||||||| || ||||| |||||||| | |
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| T |
39856362 |
tttaaatttttcaaccaagtcttctttaaaagcgatatccctcaattccataagaagttgctcttggaagttgggatccagcttcgagacttcttgtttt |
39856461 |
T |
|
| Q |
615 |
tgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatgtcctcatctatcatagcatcaatttctt |
714 |
Q |
| |
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|| ||| |||| |||||||||||| || |||||||||||| |||| |||||||| || ||| ||| | |||||||||||||||||||||||||||| |
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| T |
39856462 |
tgaacagaatggtgagattttaaggaaagagtaatcccttctgataacactctgtcgatcgcaccaatgacatcctcatctatcatagcatcaatttctt |
39856561 |
T |
|
| Q |
715 |
caaagtctttgctgacaaactttgaagtgttgcctttg |
752 |
Q |
| |
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| T |
39856562 |
tcaagtctttgctgacaaattttaaagtgttggctttg |
39856599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 363 - 714
Target Start/End: Original strand, 39863408 - 39863763
Alignment:
| Q |
363 |
caaattgtcgagtttctcaaaatcct-cacaatgttgttgagaaagctaacaacaacaccgccttgttctaattggtcagaggaaaacgcgtcagcacta |
461 |
Q |
| |
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|||||| |||||||||||||| ||| ||||||| ||||||||| | ||||||||||||| ||||||||||||| ||| | || ||||||||| || |
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| T |
39863408 |
caaattttcgagtttctcaaacaccttcacaatggtgttgagaaggttaacaacaacaccaacttgttctaattgacgagacgtgaaagcgtcagcatta |
39863507 |
T |
|
| Q |
462 |
tcgtcaacgatttctttgactgtgttgaagtaaacttctagagaaagaaggcatttaaatttttcaaccaagtcctctttaaaggcgatatccctcaatt |
561 |
Q |
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| |||| |||| |||||||| ||||||| ||||| |||| | | ||| ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
39863508 |
gcatcaattttttccttgactgtattgaagttaactttaggagagataccttcttttaatttttcaaccaagtcttctttaaaggcaatatccctcaatt |
39863607 |
T |
|
| Q |
562 |
cctgaaaaagttgctcaaagaggttgggatctagttt--cga-tgcttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaa |
658 |
Q |
| |
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|||||| |||||||| | |||| ||||||| ||||| ||| ||||||||||||| ||| ||||| || ||| ||| | || ||| ||||||| | |
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| T |
39863608 |
cctgaagaagttgcttagggaggctgggatccagttttgcgacctcttcttgtccttgaacagaatgctgaaattgtaatgaaatggtattcccttcgga |
39863707 |
T |
|
| Q |
659 |
taaaactctgtcaattgcagcaacaatgtcctcatctatcatagcatcaatttctt |
714 |
Q |
| |
|
||||||| |||| |||||||||| || |||||| |||||||||||||||| |||| |
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| T |
39863708 |
taaaactttgtcgattgcagcaataacatcctcacctatcatagcatcaatatctt |
39863763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 519 - 725
Target Start/End: Complemental strand, 38980576 - 38980370
Alignment:
| Q |
519 |
aatttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaagaggttgggatctagtttcgatgcttcttgtccttgta |
618 |
Q |
| |
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||||||||||||||||| || |||| | ||||||| ||||||||||| ||||| |||| ||||||||||| ||||| || |||||||| |||| | |
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| T |
38980576 |
aatttttcaaccaagtctcattcaaagacaatatcccacaattcctgaagaagtttctcagggaggttgggatacagttttgagacttcttgttcttgga |
38980477 |
T |
|
| Q |
619 |
caaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatgtcctcatctatcatagcatcaatttcttcaaa |
718 |
Q |
| |
|
|| ||||| ||||||||| || || |||||||||||| |||||||||||| || | ||||| | |||||||||||||||||||||| ||||| || |
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| T |
38980476 |
cagaatgctgagattttacggaaatggtaatcccttctgataaaactctgttgatagaagcaatgacatcctcatctatcatagcatcaacttctttcaa |
38980377 |
T |
|
| Q |
719 |
gtctttg |
725 |
Q |
| |
|
||||||| |
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|
| T |
38980376 |
gtctttg |
38980370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 604 - 729
Target Start/End: Original strand, 39897025 - 39897150
Alignment:
| Q |
604 |
cttcttgtccttgtacaaaatgccgagattttaagggaaatgtaatcccttctaataaaactctgtcaattgcagcaacaatgtcctcatctatcatagc |
703 |
Q |
| |
|
|||||| |||||||||| ||| || || | ||||| || |||||||||||| ||||||||||||| |||||||||| | ||||||||||||||||| |
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|
| T |
39897025 |
cttcttctccttgtacagaattacgggactctaaggaaagagtaatcccttctgataaaactctgtcgattgcagcaatgacatcctcatctatcatagc |
39897124 |
T |
|
| Q |
704 |
atcaatttcttcaaagtctttgctga |
729 |
Q |
| |
|
|||||||||||| |||||| |||||| |
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|
| T |
39897125 |
atcaatttcttccaagtctatgctga |
39897150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 515 - 574
Target Start/End: Original strand, 39846644 - 39846703
Alignment:
| Q |
515 |
tttaaatttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttg |
574 |
Q |
| |
|
|||||||||| |||||||||| | ||||||||||||||||||||||||||||| |||||| |
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|
| T |
39846644 |
tttaaattttacaaccaagtcttttttaaaggcgatatccctcaattcctgaagaagttg |
39846703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 384 - 598
Target Start/End: Complemental strand, 53495491 - 53495279
Alignment:
| Q |
384 |
atcctcacaatgttgttgagaaagctaacaacaacaccgccttgttctaattggtcagaggaaaacgcgtcagcactatcgtcaacgatttctttgactg |
483 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||| |||||||||||| | |||||| ||||| |||||| || |||||| || | |||| || |
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|
| T |
53495491 |
atcctcacaatgttgttgagaaggttaacaacaacaccaatttgttctaattgctgagaggagaacgcatcagcattagcgtcaatttttaccttgattg |
53495392 |
T |
|
| Q |
484 |
tgttgaagtaaacttctagagaaagaaggcatttaa-atttttcaaccaagtcctctttaaaggcgatatccctcaattcctgaaaaagttgctcaaaga |
582 |
Q |
| |
|
||||||| ||||| | ||| ||| ||||| ||||||||||||| |||||||||| |||||||||||||||||||| |||||||| | || |
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|
| T |
53495391 |
cattgaagttaacttttggagtgagaccttctttaatttttttcaaccaag---tctttaaaggtgatatccctcaattcctgaagaagttgcttaggga |
53495295 |
T |
|
| Q |
583 |
ggttgggatctagttt |
598 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
53495294 |
ggttgggatccagttt |
53495279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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