View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_low_20 (Length: 411)
Name: NF2880_low_20
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 42206984 - 42206598
Alignment:
| Q |
18 |
aactagttctatcaaaatctgaaatctcggagaaaacgtcataataggtggatgaacaagtactatggggagaccctgagccctcagagtagctaagtgc |
117 |
Q |
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| T |
42206984 |
aactagttctatcaaaatctgaaatctcggagaaaacgtcataataggtggatgaacaagtactatggggagaccctgagccctcagagtagctaagtgc |
42206885 |
T |
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| Q |
118 |
atcatctacagcagttgcatcattgatattatctcttctttcatttggaatgcttttgttatgtaaagaaacattctcttcatattttactctgctgctg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42206884 |
atcatctacagcagttgcatcattgatattatctcttctttcatttggaatgcttttgttatgtaaagaaacattctcttcatattttactctgctgctg |
42206785 |
T |
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| Q |
218 |
ctgaaaaaattgacattgtccctcaacagaaagtaggagcttgtcactaaacacaaccaaaaaggcaaccagctgttagcatccaaatggaatgaagcag |
317 |
Q |
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| T |
42206784 |
ctgaaaaaattgatattgtccctcaacagaaagtaggagcttgtcactaaacacaaccaaaaaggcaaccagctgttagcatccaaatggaatgaagcag |
42206685 |
T |
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| Q |
318 |
aatagtcgttctcttcaacaaacgacgaagaccttcttttgttacgactgtcaccacgccaatcctgaaggtcattgtttctctctg |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42206684 |
aatagtcgttctcttcaacaaacgacgaagaccttcttttgttacgactgtcaccacgccaatcctgaaggtcattgtttctctctg |
42206598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 29 - 401
Target Start/End: Complemental strand, 42213806 - 42213434
Alignment:
| Q |
29 |
tcaaaatctgaaatctcggagaaaacgtcataataggtggatgaacaagtactatggggagaccctgagccctcagagtagctaagtgcatcatctacag |
128 |
Q |
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||||||||||||||||| |||||| |||| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
42213806 |
tcaaaatctgaaatctcagagaaagcgtcgtaataggtggatgaacaagtactgtggggagaccctaagccgtcagagtagctaagtgcatcatctacag |
42213707 |
T |
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| Q |
129 |
cagttgcatcattgatattatctcttctttcatttggaatgcttttgttatgtaaagaaacattctcttcatattttactctgctgctgctgaaaaaatt |
228 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||| ||| ||||||| || |||||||| || |
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| T |
42213706 |
aagttgcatcattgatattatctgttctttcatttggaatgcttctgttagctaaagaagcattctcttcaggtttaactctgcagccactgaaaaagtt |
42213607 |
T |
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| Q |
229 |
gacattgtccctcaacagaaagtaggagcttgtcactaaacacaaccaaaaaggcaaccagctgttagcatccaaatggaatgaagcagaatagtcgttc |
328 |
Q |
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||| || | ||||||||||||||||||||||| |||||||||||||| |||| ||||||| |||| ||| | ||| |||||||||||||||||| ||| |
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| T |
42213606 |
gacttttttgctcaacagaaagtaggagcttgttactaaacacaaccagaaagccaaccagatgttcgcaccagaattgaatgaagcagaatagtcattc |
42213507 |
T |
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| Q |
329 |
tcttcaacaaacgacgaagaccttcttttgttacgactgtcaccacgccaatcctgaaggtcattgtttctct |
401 |
Q |
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||||||||||||| ||||||| ||||| |||||| || ||||||||| || || |||| ||| ||||||||| |
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| T |
42213506 |
tcttcaacaaacggcgaagactttcttctgttaccacggtcaccacggcattcacgaagatcagtgtttctct |
42213434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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