View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2880_low_21 (Length: 404)

Name: NF2880_low_21
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2880_low_21
NF2880_low_21
[»] chr7 (7 HSPs)
chr7 (23-301)||(48669514-48669795)
chr7 (338-393)||(47719697-47719752)
chr7 (344-393)||(14305100-14305149)
chr7 (337-393)||(48669803-48669859)
chr7 (344-390)||(13785589-13785635)
chr7 (344-382)||(24389620-24389658)
chr7 (344-384)||(3688394-3688434)
[»] chr2 (8 HSPs)
chr2 (338-391)||(36238724-36238777)
chr2 (338-393)||(29513139-29513194)
chr2 (344-393)||(16692966-16693015)
chr2 (344-376)||(20432377-20432409)
chr2 (338-393)||(40252027-40252082)
chr2 (338-392)||(11750262-11750316)
chr2 (344-393)||(15902874-15902923)
chr2 (344-376)||(36237642-36237674)
[»] chr5 (9 HSPs)
chr5 (338-393)||(1281840-1281895)
chr5 (338-393)||(2313951-2314006)
chr5 (344-393)||(1283492-1283541)
chr5 (344-390)||(19128780-19128826)
chr5 (344-382)||(29087935-29087973)
chr5 (338-382)||(235596-235640)
chr5 (344-384)||(7632105-7632145)
chr5 (345-393)||(9407261-9407309)
chr5 (338-382)||(22212982-22213026)
[»] chr4 (9 HSPs)
chr4 (344-393)||(55976177-55976226)
chr4 (338-393)||(24551916-24551971)
chr4 (338-393)||(55000692-55000747)
chr4 (346-393)||(55976948-55976995)
chr4 (338-392)||(20774174-20774228)
chr4 (344-381)||(9365821-9365858)
chr4 (344-393)||(19550297-19550346)
chr4 (338-390)||(24158816-24158868)
chr4 (338-382)||(30573713-30573757)
[»] chr3 (12 HSPs)
chr3 (344-393)||(17603179-17603228)
chr3 (345-393)||(17603954-17604002)
chr3 (344-393)||(21727522-21727571)
chr3 (338-391)||(46149634-46149687)
chr3 (338-393)||(11654022-11654077)
chr3 (174-213)||(46786689-46786728)
chr3 (344-390)||(48648214-48648260)
chr3 (344-392)||(265092-265140)
chr3 (344-376)||(40872818-40872850)
chr3 (338-390)||(48649169-48649221)
chr3 (338-390)||(48765066-48765118)
chr3 (344-376)||(52282422-52282454)
[»] chr1 (9 HSPs)
chr1 (338-393)||(24991974-24992029)
chr1 (345-393)||(24992737-24992785)
chr1 (338-382)||(25468514-25468558)
chr1 (344-392)||(30663368-30663416)
chr1 (174-213)||(34454164-34454203)
chr1 (338-393)||(47967866-47967921)
chr1 (344-390)||(25469082-25469128)
chr1 (344-385)||(28182073-28182114)
chr1 (344-376)||(45818031-45818063)
[»] chr8 (4 HSPs)
chr8 (344-393)||(32414516-32414565)
chr8 (337-393)||(28929849-28929905)
chr8 (344-390)||(38628261-38628307)
chr8 (338-390)||(31641516-31641568)
[»] scaffold2007 (1 HSPs)
scaffold2007 (338-392)||(755-809)
[»] chr6 (2 HSPs)
chr6 (338-392)||(8488473-8488527)
chr6 (344-384)||(19311828-19311868)


Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 23 - 301
Target Start/End: Original strand, 48669514 - 48669795
Alignment:
Q  23 gttacgtgtgtgatggaacagaactgaatagtatgattcttcaggtggcaagcaaggtaacgaaccaattaatatactctttcctctcactttcttcact 122  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48669514 gttacgtgtgtgatggaacagaacagaatagtatgattcttcaggtggcaagcaaggtaacgaaccaattaatatactctttcctctcactttcttcact 48669613  T
Q  123 ctatact-ccatttgcttttcgatttccaacacaaataaaacaaata-tttccaattgtaggttcgccttaggccaccaaaatctcataaac-gtcatgc 219  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| | | |||    
T  48669614 ctatactcccatttgcttttcgatttccaacacaaataaaacaaatattttcaaattgtaggttcgccttaggccaccaaaatcttataaacggccctgc 48669713  T
Q  220 gtccaaaaagatttaaactccatccaccttttacctttgaacaaaaagatccattattttagtccatccttataaaatctat 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||| ||||||||    
T  48669714 gtccaaaaagatttaaactccatccaccttttacctttgaacaaaaagttccattcttttagtccatcattattaaatctat 48669795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 393
Target Start/End: Complemental strand, 47719752 - 47719697
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  47719752 gatccattgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 47719697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 14305100 - 14305149
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    ||||||| |||| |||||||||||||||||||| ||||||||||||||||    
T  14305100 ttgacactaggtgtcaacggattcattgacaccaaatcttaaacgttcat 14305149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 393
Target Start/End: Original strand, 48669803 - 48669859
Alignment:
Q  337 agatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    ||||| ||||||||||||| |||||| |||||||  |||| ||||||||||||||||    
T  48669803 agatccattgacaccaggtgtcaacgaattcattaccaccaaatcttaaacgttcat 48669859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 390
Target Start/End: Complemental strand, 13785635 - 13785589
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 390  Q
    |||||||||||| ||||||||||| |||||||| |||||||| ||||    
T  13785635 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaagcgtt 13785589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 382
Target Start/End: Complemental strand, 24389658 - 24389620
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatct 382  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  24389658 ttgacaccaggtgtcaacggattcattgacaccaaatct 24389620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 384
Target Start/End: Original strand, 3688394 - 3688434
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatctta 384  Q
    |||||||||| ||||||||||||| |||||||| |||||||    
T  3688394 ttgacaccagatatcaacggattcgttgacaccaaatctta 3688434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 36238777 - 36238724
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttc 391  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36238777 gatccattgacaccaggtatcaacggattcattgacaccaaatcttaaacgttc 36238724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 393
Target Start/End: Complemental strand, 29513194 - 29513139
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||| ||||||||||||| ||||||||||| |||||||| |||||| |||||||||    
T  29513194 gatccattgacaccaggtgtcaacggattcgttgacaccaaatcttgaacgttcat 29513139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 393
Target Start/End: Complemental strand, 16693015 - 16692966
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||||||||||| ||||||||||| |||||||| |||||||| |||||||    
T  16693015 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaagcgttcat 16692966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 20432409 - 20432377
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacc 376  Q
    |||||||||||||||||||||||||||||||||    
T  20432409 ttgacaccaggtatcaacggattcattgacacc 20432377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 393
Target Start/End: Original strand, 40252027 - 40252082
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||| ||| ||||||||| ||||||||||| |||||||| |||| |||||||||||    
T  40252027 gatccattaacaccaggtgtcaacggattcgttgacaccaaatcctaaacgttcat 40252082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 392
Target Start/End: Original strand, 11750262 - 11750316
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 392  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||| || ||||||    
T  11750262 gatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttca 11750316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 393
Target Start/End: Complemental strand, 15902923 - 15902874
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||||||||||| ||||||||||| |||||||  |||||||| |||||||    
T  15902923 ttgacaccaggtgtcaacggattcgttgacacaaaatcttaagcgttcat 15902874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 36237642 - 36237674
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacc 376  Q
    |||||||||||| ||||||||||||||||||||    
T  36237642 ttgacaccaggtgtcaacggattcattgacacc 36237674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 393
Target Start/End: Original strand, 1281840 - 1281895
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  1281840 gatccattgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 1281895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 393
Target Start/End: Original strand, 2313951 - 2314006
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||| ||||||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  2313951 gatccattgacaccaggtgtcaacagattcattgacaccaaatcttaaacgttcat 2314006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 393
Target Start/End: Complemental strand, 1283541 - 1283492
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  1283541 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 1283492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 390
Target Start/End: Original strand, 19128780 - 19128826
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 390  Q
    |||||||||||| ||||||||||| |||||||| |||||||| ||||    
T  19128780 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaccgtt 19128826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 382
Target Start/End: Original strand, 29087935 - 29087973
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatct 382  Q
    |||||||||||| |||||||||||||||||||| |||||    
T  29087935 ttgacaccaggtgtcaacggattcattgacaccaaatct 29087973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 235596 - 235640
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatct 382  Q
    |||| ||||||||||||| ||||||||||| |||||||| |||||    
T  235596 gatccattgacaccaggtgtcaacggattcgttgacaccaaatct 235640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 384
Target Start/End: Original strand, 7632105 - 7632145
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatctta 384  Q
    |||||||||||| ||||||||||| |||||||| |||||||    
T  7632105 ttgacaccaggtgtcaacggattcgttgacaccaaatctta 7632145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 393
Target Start/End: Original strand, 9407261 - 9407309
Alignment:
Q  345 tgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||||||| || ||||||||||| |||||||| |||||||| |||||||    
T  9407261 tgacaccaagtgtcaacggattcgttgacaccaaatcttaagcgttcat 9407309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 22213026 - 22212982
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatct 382  Q
    ||||| ||||| |||||| |||||||||||||||||||| |||||    
T  22213026 gatcagttgacgccaggtgtcaacggattcattgacaccaaatct 22212982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 55976177 - 55976226
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  55976177 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 55976226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 393
Target Start/End: Complemental strand, 24551971 - 24551916
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||| ||||||||||||| ||||||||||  |||||||| ||||||||||||||||    
T  24551971 gatccattgacaccaggtgtcaacggatttgttgacaccaaatcttaaacgttcat 24551916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 393
Target Start/End: Original strand, 55000692 - 55000747
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||| ||||||||||| | ||||||||||| |||||||| ||||||||||||||||    
T  55000692 gatccattgacaccagatgtcaacggattcgttgacaccaaatcttaaacgttcat 55000747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 393
Target Start/End: Complemental strand, 55976995 - 55976948
Alignment:
Q  346 gacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  55976995 gacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 55976948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 392
Target Start/End: Complemental strand, 20774228 - 20774174
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 392  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||| || ||||||    
T  20774228 gatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttca 20774174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 381
Target Start/End: Complemental strand, 9365858 - 9365821
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatc 381  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  9365858 ttgacaccaggtgtcaacggattcattgacaccaaatc 9365821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 19550297 - 19550346
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||||||||||| ||||||||||| |||||||| ||| |||| |||||||    
T  19550297 ttgacaccaggtgtcaacggattcgttgacaccaaattttaagcgttcat 19550346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 390
Target Start/End: Complemental strand, 24158868 - 24158816
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 390  Q
    |||| ||||||||||||| ||||| ||||| |||||||| |||||||| ||||    
T  24158868 gatccattgacaccaggtgtcaacagattcgttgacaccaaatcttaaccgtt 24158816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 30573757 - 30573713
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatct 382  Q
    |||| ||||||||||||| ||||||||||| |||||||| |||||    
T  30573757 gatccattgacaccaggtgtcaacggattcgttgacaccaaatct 30573713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 17603179 - 17603228
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  17603179 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 17603228  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 17604002 - 17603954
Alignment:
Q  345 tgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    ||||||||||| ||||||||||| |||||||| ||||||||||||||||    
T  17604002 tgacaccaggtgtcaacggattcgttgacaccaaatcttaaacgttcat 17603954  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 393
Target Start/End: Complemental strand, 21727571 - 21727522
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||||||||||| ||||||||||| |||||||| |||||||| |||||||    
T  21727571 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaagcgttcat 21727522  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Original strand, 46149634 - 46149687
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttc 391  Q
    |||| ||||||||||||| |||| |||||| |||||||| ||||||||||||||    
T  46149634 gatccattgacaccaggtgtcaatggattcgttgacaccaaatcttaaacgttc 46149687  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 393
Target Start/End: Complemental strand, 11654077 - 11654022
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||| ||||||||||| | ||||||||||| |||||||| ||||||||| ||||||    
T  11654077 gatccattgacaccagatctcaacggattcgttgacaccaaatcttaaatgttcat 11654022  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 46786728 - 46786689
Alignment:
Q  174 aattgtaggttcgccttaggccaccaaaatctcataaacg 213  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  46786728 aattgtaggttcgccctaggccaccaaaatctcagaaacg 46786689  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 390
Target Start/End: Original strand, 48648214 - 48648260
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 390  Q
    |||||||||||| ||||||||||| |||||||| |||||||| ||||    
T  48648214 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaccgtt 48648260  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 265140 - 265092
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 392  Q
    |||||||||||| ||||||||||| |||||||| ||||| || ||||||    
T  265140 ttgacaccaggtgtcaacggattcgttgacaccaaatctcaagcgttca 265092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 40872850 - 40872818
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacc 376  Q
    |||||||||||| ||||||||||||||||||||    
T  40872850 ttgacaccaggtgtcaacggattcattgacacc 40872818  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 390
Target Start/End: Complemental strand, 48649221 - 48649169
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 390  Q
    |||| ||||||||||||| ||||| ||||| |||||||| |||||||| ||||    
T  48649221 gatccattgacaccaggtgtcaacagattcgttgacaccaaatcttaaccgtt 48649169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 390
Target Start/End: Complemental strand, 48765118 - 48765066
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 390  Q
    |||| ||||||||||||| |||| |||||| |||||||| |||||||| ||||    
T  48765118 gatccattgacaccaggtgtcaatggattcgttgacaccaaatcttaaccgtt 48765066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Complemental strand, 52282454 - 52282422
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacc 376  Q
    |||||||||||| ||||||||||||||||||||    
T  52282454 ttgacaccaggtgtcaacggattcattgacacc 52282422  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 338 - 393
Target Start/End: Original strand, 24991974 - 24992029
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||| ||||||||||||| ||||||||||| |||||||| |||| |||||||||||    
T  24991974 gatccattgacaccaggtgtcaacggattcgttgacaccaaatcataaacgttcat 24992029  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 345 - 393
Target Start/End: Complemental strand, 24992785 - 24992737
Alignment:
Q  345 tgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    ||||||||||| ||||||||||| |||||| | ||||||||||||||||    
T  24992785 tgacaccaggtgtcaacggattcgttgacatcaaatcttaaacgttcat 24992737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 25468514 - 25468558
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatct 382  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||    
T  25468514 gatccattgacaccaggtgtcaacggattcattgacaccaaatct 25468558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 344 - 392
Target Start/End: Original strand, 30663368 - 30663416
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 392  Q
    |||||||||||||||||||||||| |||||||| ||||| || ||||||    
T  30663368 ttgacaccaggtatcaacggattcgttgacaccaaatctcaaccgttca 30663416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 34454164 - 34454203
Alignment:
Q  174 aattgtaggttcgccttaggccaccaaaatctcataaacg 213  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  34454164 aattgtaggttcgccctaggccaccaaaatctcagaaacg 34454203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 338 - 393
Target Start/End: Original strand, 47967866 - 47967921
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||| ||||||||||||| ||||||||||| |||||||| |||||| | |||||||    
T  47967866 gatccattgacaccaggtgtcaacggattcgttgacaccaaatcttgagcgttcat 47967921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 390
Target Start/End: Complemental strand, 25469128 - 25469082
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 390  Q
    |||||||||||| ||||||||||| |||||||| |||||||| ||||    
T  25469128 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaaccgtt 25469082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 344 - 385
Target Start/End: Complemental strand, 28182114 - 28182073
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatcttaa 385  Q
    |||||||||||| ||||||||||| |||||||| ||||||||    
T  28182114 ttgacaccaggtgtcaacggattctttgacaccaaatcttaa 28182073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 376
Target Start/End: Original strand, 45818031 - 45818063
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacc 376  Q
    |||||||||||| ||||||||||||||||||||    
T  45818031 ttgacaccaggtgtcaacggattcattgacacc 45818063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 344 - 393
Target Start/End: Complemental strand, 32414565 - 32414516
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    |||||||||||| ||||||||||| |||||||| |||||||| |||||||    
T  32414565 ttgacaccaggtgtcaacggattcgttgacaccaaatcttaagcgttcat 32414516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 337 - 393
Target Start/End: Original strand, 28929849 - 28929905
Alignment:
Q  337 agatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttcat 393  Q
    ||||| ||||||||||| | ||||||||||| |||||||| |||||||||| |||||    
T  28929849 agatccattgacaccagatgtcaacggattcgttgacaccaaatcttaaactttcat 28929905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 390
Target Start/End: Original strand, 38628261 - 38628307
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 390  Q
    |||||||||||||||||||||||| |||||||  |||||||| ||||    
T  38628261 ttgacaccaggtatcaacggattcgttgacacaaaatcttaaccgtt 38628307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 390
Target Start/End: Original strand, 31641516 - 31641568
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgtt 390  Q
    |||| ||||||||||||| |||| |||||| |||||||| |||||||| ||||    
T  31641516 gatccattgacaccaggtgtcaatggattcgttgacaccaaatcttaaccgtt 31641568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2007 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold2007
Description:

Target: scaffold2007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 392
Target Start/End: Original strand, 755 - 809
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 392  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||| || ||||||    
T  755 gatccattgacaccaggtttcaacggattcgttgacaccaaatctcaagcgttca 809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 392
Target Start/End: Original strand, 8488473 - 8488527
Alignment:
Q  338 gatcaattgacaccaggtatcaacggattcattgacacctaatcttaaacgttca 392  Q
    |||| ||||||||||||| ||||||||||| |||||||| ||||| || ||||||    
T  8488473 gatccattgacaccaggtgtcaacggattcgttgacaccaaatctcaaccgttca 8488527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 384
Target Start/End: Complemental strand, 19311868 - 19311828
Alignment:
Q  344 ttgacaccaggtatcaacggattcattgacacctaatctta 384  Q
    |||||||||||| ||||||||||| |||||||| |||||||    
T  19311868 ttgacaccaggtgtcaacggattcgttgacaccaaatctta 19311828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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