View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_low_22 (Length: 390)
Name: NF2880_low_22
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 115665 - 115301
Alignment:
| Q |
18 |
attccatctccaagtgaatgatgaattctaaatataatacacttgtgtgctctcagaatatgcatctcccaaagtggcttatccatgctcagttttgatt |
117 |
Q |
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| T |
115665 |
attccatctccaagtgaatgatgaattctaaatataatacacttgtgtgctctcagaatatgcatctcccaaagtggcttatccatgctcagttttgatt |
115566 |
T |
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| Q |
118 |
ctgtgcataaatcagacatatactcactgattgctgattcatcatccttatcctcggagactgattcgttgttgatgataaagatgtggcggtcgaggtc |
217 |
Q |
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| T |
115565 |
ctgtgcataaatcagacatatactcactgattgctgattcatcatccttatcctcggagactgattcgttgttgatgataaagatgtggcggtcgaggtc |
115466 |
T |
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| Q |
218 |
aattttgattggacgccagtgttcaacacctcgatggtcacgaaccatgaggctagtgaaccttggatgttggagcataactgagttttgaatttgggtt |
317 |
Q |
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| T |
115465 |
aattttgattggacgccagtgttcaacacctcgatggtcacgaaccatgaggctagtgaaccttggatgttggagcataactgagttttggatttgggtt |
115366 |
T |
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| Q |
318 |
tttactgaatcaacatcgattggtttcttcaaccctatgacacagtggattatttggttcatctc |
382 |
Q |
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| T |
115365 |
tttactgaatcaacatcgattggtttcttcaaccctatgacacagtggattatttggttcatctc |
115301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 141 - 382
Target Start/End: Complemental strand, 14832587 - 14832349
Alignment:
| Q |
141 |
tcactgattgctgattcatcatccttatcctcggagactgattcgttgttgatgataaagatgtggcggtcgaggtcaattttgattggacgccagtgtt |
240 |
Q |
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| T |
14832587 |
tcactgattgctgattcatcctccttgtttgtagagactgaatcgttgatgatga---agattcggcggttgaggtcgattttaattggatgctagtgtt |
14832491 |
T |
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| Q |
241 |
caacacctcgatggtcacgaaccatgaggctagtgaaccttggatgttggagcataactgagttttgaatttgggtttttactgaatcaacatcgattgg |
340 |
Q |
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|||| |||||||||||||| |||||||| || || ||||||||||||||||||||||| ||||| || |||||| | |||||||| |||||||| ||||| |
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| T |
14832490 |
caacgcctcgatggtcacggaccatgagacttgtaaaccttggatgttggagcataacagagttctggatttggttatttactgagtcaacatcaattgg |
14832391 |
T |
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| Q |
341 |
tttcttcaaccctatgacacagtggattatttggttcatctc |
382 |
Q |
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| T |
14832390 |
attcttcagacctatgacacagtggattatttggttcatctc |
14832349 |
T |
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