View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2880_low_25 (Length: 356)
Name: NF2880_low_25
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 25629132 - 25628905
Alignment:
| Q |
1 |
ctatgaaatttcatccgcttgaaatacaaacaaaagattattccaacaattgaaataaaaaccacataaattttcaaatagaaagatattacaaatactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25629132 |
ctatgaaatttcatccgcttgaaatacaaacaaaagattattccaacaattgagataaaaaccacataaattttcaaatagaaagatattacaaatactt |
25629033 |
T |
|
| Q |
101 |
tcaatataaaatggttaaagctgcaacattcataattacaaaatggtttattaatttttcatatgcttcgtaatcataaatatgataattggtgattgac |
200 |
Q |
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| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25629032 |
ttaatataaaatggttaaagctgcaaaattcataattacaaaatggtttattaatttttcatatgcttcgtaatcataaatatgataattggtgattgac |
25628933 |
T |
|
| Q |
201 |
aaaccactttttattattaaagataaaa |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
25628932 |
aaaccactttttattattaaagataaaa |
25628905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 226 - 346
Target Start/End: Complemental strand, 25628482 - 25628362
Alignment:
| Q |
226 |
aaaagatcctaataattgagaacaacaaaaactaactaatgatttattcctccatttttcttatagaatataattcttgaatatgcgtcttcaacaccgt |
325 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25628482 |
aaaagatcctaataattgagaacaacaaaaactaactaatgatttattcctccatttttcttatagaatataattcttgaatatgtttcttcaacaccgt |
25628383 |
T |
|
| Q |
326 |
caagttcctcaatcatctgtg |
346 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
25628382 |
caagttcctcaatcatctgtg |
25628362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 30250208 - 30250111
Alignment:
| Q |
128 |
attcataattacaaaatggtttattaatttttcatatgcttcgtaatcataaatatgataattggtgattgacaaaccactttttattattaaagataaa |
227 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||| | || |||| ||||||||| ||||||||||||||||||||||||| | ||| |||| |
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| T |
30250208 |
attcataattataaaatggttaattaatttttcatatatatacta--cata--tatgataatgagtgattgacaaaccactttttattactcaaggtaaa |
30250113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 75 - 346
Target Start/End: Complemental strand, 30652005 - 30651737
Alignment:
| Q |
75 |
caaatagaaagatattacaaatactttcaatataaaatggttaaagctgcaacattcataattacaaaatggtttattaatttttcatatgcttcgtaat |
174 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | || ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
30652005 |
caaatagaaagatagtacaaatactttcaatataaatttgtcaaagctgcaacattcataattacaagatggtttattaatttatcatatgcttcgtaat |
30651906 |
T |
|
| Q |
175 |
cataaatatgataattggtgattgacaaaccactttttattattaaagataaaaagatcctaataattgagaacaacaaaaactaactaatgatttattc |
274 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30651905 |
cataaatatgataatgggtgattgataaaccactttttattatttaagataaaatgatcctaataattgaga---acaaaaactaactaatgatttattc |
30651809 |
T |
|
| Q |
275 |
ctccatttttcttatagaatataattcttgaatatgcgtcttcaacaccgtcaagttcctcaatcatctgtg |
346 |
Q |
| |
|
|||||||||||||||||| ||| ||| | |||||||| | ||| ||||||||||||| |||||||||||||| |
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|
| T |
30651808 |
ctccatttttcttatagattattattttggaatatgctttttccacaccgtcaagtttctcaatcatctgtg |
30651737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 59 - 346
Target Start/End: Complemental strand, 31778369 - 31778083
Alignment:
| Q |
59 |
aaaccacataaattttcaaatagaaagatattacaaatactttcaatataaaatggttaaagctgcaacattcataattacaaaatggtttattaatttt |
158 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||| ||| ||||||| ||| |
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|
| T |
31778369 |
aaaccacatcaattttcaaatagaaagacggtacaaatactttcaatataaaattgtcaaagctgcaacattcataattacaagatgatttattagttta |
31778270 |
T |
|
| Q |
159 |
tcatatgcttcg--taatcataaatatgataattggtgattgacaaaccactttttattattaaagataaaaagatcctaataattgagaacaacaaaaa |
256 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||| |
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| T |
31778269 |
tcatatgcttcgtataatcataaatatgataatgggtgattgacaaaccactttttattattcaagataaaatgatcctaataattgag---aacaaaaa |
31778173 |
T |
|
| Q |
257 |
ctaactaatgatttattcctccatttttcttatagaatataattcttgaatatgcgtcttcaacaccgtcaagttcctcaatcatctgtg |
346 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||| ||| |||||||| | ||| |||||||||||||||||||||||||||| |
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|
| T |
31778172 |
ctaactaatgatctattcctccatttttcttatagattattatttcggaatatgctttttccacaccgtcaagttcctcaatcatctgtg |
31778083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 97 - 240
Target Start/End: Complemental strand, 4028352 - 4028209
Alignment:
| Q |
97 |
actttcaatataaaatggttaaagctgcaacattcataattacaaaatggtttattaatttttcatatgcttcgtaatcataaatatgataattggtgat |
196 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||||||||||| |||||| |||||||||||||||||| || | ||||||||| ||||||||| |||| |
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| T |
4028352 |
actttcaatataaaatttataaagaaacaatattcataattataaaatgctttattaatttttcatatactgcataatcataattatgataatgaatgat |
4028253 |
T |
|
| Q |
197 |
tgacaaaccactttttattattaaagataaaaagatcctaataa |
240 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| ||||||||||| |
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|
| T |
4028252 |
tgacaaaccactttttattatccaaggtaaaatgatcctaataa |
4028209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 97 - 240
Target Start/End: Original strand, 29352058 - 29352201
Alignment:
| Q |
97 |
actttcaatataaaatggttaaagctgcaacattcataattacaaaatggtttattaatttttcatatgcttcgtaatcataaatatgataattggtgat |
196 |
Q |
| |
|
|||||||||||| ||| |||||| ||| ||||||||||| | | || |||||| |||||||| ||||| | ||| ||||| ||||||||| ||||| |
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| T |
29352058 |
actttcaatatataatttataaagcaacaatattcataattatagagtgctttattgatttttcaaatgctgcataaccataattatgataatgagtgat |
29352157 |
T |
|
| Q |
197 |
tgacaaaccactttttattattaaagataaaaagatcctaataa |
240 |
Q |
| |
|
| |||||||||||||||||||| ||| ||||| ||||||||||| |
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|
| T |
29352158 |
ttacaaaccactttttattattcaaggtaaaatgatcctaataa |
29352201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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