View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2880_low_26 (Length: 354)
Name: NF2880_low_26
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 342
Target Start/End: Complemental strand, 51910367 - 51910045
Alignment:
| Q |
20 |
ctcaggtcccttaccagcaattcctatcaagggcattcctgcccttttgtccatagacctgtcttataataatctcagcctgggaagtgtacctgattgg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51910367 |
ctcaggtcccttaccagcaattcctatcaagggcattcctgcccttttgtccatagacctgtcttataataatctcagcctgggaagtgtacctgattgg |
51910268 |
T |
|
| Q |
120 |
atcagaagcagggaacttaaagacgtgcgtttagccgggtgtaaattgaagggagatcttccacaattcaccagaccagactctttgagctccatagacc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51910267 |
atcagaagcagggaacttaaagacgtgcgtttagccgggtgtaaattgaagggagatcttccacaattcaccagaccagactctttgagctccatagacc |
51910168 |
T |
|
| Q |
220 |
tatcagagaactgcctggttgatggtatttcaaacttcttcacaaatatgtcaagtttgcaagaggtcaagctctcaaacaaccagttgaggtttgacat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51910167 |
tatcagagaactgcctggttgatggtatttcaaacttcttcacaaatatgtcaagtttgcaagaggtcaagctctcaaacaaccagttgaggtttgacat |
51910068 |
T |
|
| Q |
320 |
ttctaaaataaaattgccatctg |
342 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
51910067 |
ttctaaaataaaattgccatctg |
51910045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University