View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_low_27 (Length: 347)
Name: NF2880_low_27
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 125 - 340
Target Start/End: Complemental strand, 3707615 - 3707394
Alignment:
| Q |
125 |
ccggattatgtaatctaaaaatctgtagggcgtgcgaaaaaccagaaggtagggatagaaaccatcaaagtattatcctatgatttttgcaggtatagac |
224 |
Q |
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| T |
3707615 |
ccggattatgtaatctaaaaatctgtagggcgtgcgaaaaaccaataggtagggatagaaaccatcaaagtattatcctatgatttttgcaggtatagac |
3707516 |
T |
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| Q |
225 |
aaagaagctttaagagtgtattcatttgaagcccatcagaccannnnnnngctttgggagccgaaaccct-------ttgtagagtggtaattgctcatt |
317 |
Q |
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| T |
3707515 |
aaagaaac-ttaagagtgtattcatttgaagcctaccggaccatttttttgctttgggagccgaaacccttcaattgttgtagagtggtaattgctcatt |
3707417 |
T |
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| Q |
318 |
tatacttccaacgattcatctca |
340 |
Q |
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| T |
3707416 |
tatacttccaacgattcttctca |
3707394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 3707722 - 3707653
Alignment:
| Q |
18 |
ataaattattggaataataaaatataaaggagttgaagtgtattataaaaataagataaacaagtaaccc |
87 |
Q |
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| T |
3707722 |
ataaattattggaatcataaaatataaaggagttgaagtgtattataaaaataagataaacaagtaaccc |
3707653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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