View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2880_low_29 (Length: 324)

Name: NF2880_low_29
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2880_low_29
NF2880_low_29
[»] chr2 (1 HSPs)
chr2 (19-310)||(39076970-39077261)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 39077261 - 39076970
Alignment:
Q  19 cttccaccatggaatccaattccaaatgcaacagaagagttacaagaggaagagaataataataaaaatgcagtagaaacaaatgaaatggttattgcag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39077261 cttccaccatggaatccaattccaaatgcaacagaagagttacaagaggaagagaataataataataatgcagtagaaacaaatgaaatggttattgcag 39077162  T
Q  119 cagaacaatcagaatcttctggttacaatttgcagcagaacaatcatcataaccataaccattcaggtttcattcaatcaactattgataatgatgctat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39077161 cagaacaatcagaatcttctggttacaatttgcagcagaacaatcatcataaccataaccattcaggtttcattcaatcaactattgataatgatgctat 39077062  T
Q  219 agcattttttccaacaacttctgttggtgaatctatgaattttcaaagctactcttctgatataatctcaagaacaaacaactcaacacagg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39077061 agcattttttccaacaacttctgttggtgaatctatgaattttcaaagctactcttctgatataatctcaagaacaaacaactcaacacagg 39076970  T

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