View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_low_31 (Length: 309)
Name: NF2880_low_31
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 11292874 - 11292995
Alignment:
| Q |
18 |
gtgctaatacatcatggtctcttttgtgtaagttttgtttctttaagatacaaattaatataaattatccacctgtgataataatttgagggtaatgcag |
117 |
Q |
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| T |
11292874 |
gtgctaatacatcatggtctcttttgtgtaagttttgttgctt-aagatacaaattaatataaattatccacctgtgataataatttgagggtaatgcag |
11292972 |
T |
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| Q |
118 |
ataaacagaattaattgttacaa |
140 |
Q |
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| T |
11292973 |
ataatcagaattaattgttacaa |
11292995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 200 - 296
Target Start/End: Original strand, 11293056 - 11293152
Alignment:
| Q |
200 |
ggataaacaaagctaacaagtttgactcctataatttaccaaacaagattaattacttgtgatgtgtgttttcaggatggtgtatcatggctgctga |
296 |
Q |
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| T |
11293056 |
ggataaacaaagttaacaaatttgactcctataatttaccaaacaagattaattacttgtgatgtgtgttttcaggatggtgtatcatggctgctga |
11293152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 11299053 - 11299097
Alignment:
| Q |
252 |
ttacttgtgatgtgtgttttcaggatggtgtatcatggctgctga |
296 |
Q |
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| T |
11299053 |
ttacttgtgatgtgtgttttcaggatggtgtatcatggctgctga |
11299097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 11298217 - 11298287
Alignment:
| Q |
14 |
acctgtgctaatacatcatggtctcttttgtgtaagttttgtttctttaagatacaaattaatataaattat |
85 |
Q |
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| T |
11298217 |
acctgtgctaatacatcatggtctcttttctgtaagttttg-ttgatgctgatacaaattaatataaattat |
11298287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 30903985 - 30904023
Alignment:
| Q |
18 |
gtgctaatacatcatggtctcttttgtgtaagttttgtt |
56 |
Q |
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| T |
30903985 |
gtgctaatacaacatggtctcttttgtgtaagttttgtt |
30904023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 36706008 - 36705967
Alignment:
| Q |
14 |
acctgtgctaatacatcatggtctcttttgtgtaagttttgt |
55 |
Q |
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| T |
36706008 |
acctgtgttaatccaacatggtctcttttgtgtaagttttgt |
36705967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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