View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_low_32 (Length: 303)
Name: NF2880_low_32
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 7 - 278
Target Start/End: Original strand, 29326415 - 29326686
Alignment:
| Q |
7 |
tccaagaatattcacatatttcaaaattataagtaaatattgagaaacaatgttatgtgttaatatgatgggttgagcgtctgtaatattataatctatg |
106 |
Q |
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| T |
29326415 |
tccaacaatattcacatatttcaaaattataagtaaatattgagaaacaatgttatgtgttaatatgatgggttgagcgtctgtaatattataatctatg |
29326514 |
T |
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| Q |
107 |
tcttatatgttgcaagcaggtcgaatattttgagcaccaaatttagtaaaatgttcatcaaattctagttattagaaattatataacaagttatctaagc |
206 |
Q |
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| T |
29326515 |
tcttatatgttgcaagcatgtcgaatattttgagcaccaaatttagtaaaatgttcatcaaattctagttattagaaattatataacaagttatctaagc |
29326614 |
T |
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| Q |
207 |
attttataatgatcattttcatggatttttatatatgaactgcatctaatagttgcttgtattgtagctact |
278 |
Q |
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| T |
29326615 |
attttataatgatcattttcatggatttttatatatgaactgcatctaatagttgcttgtattgtagctact |
29326686 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 5828884 - 5828937
Alignment:
| Q |
194 |
aagttatctaagcattttataatgatcattttcatggatttttatatatgaact |
247 |
Q |
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||||||| ||| |||||||||| |||||||||||| |||||||||||| |||| |
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| T |
5828884 |
aagttatgtaatcattttataagcatcattttcatgaatttttatatatcaact |
5828937 |
T |
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