View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_low_36 (Length: 284)
Name: NF2880_low_36
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_36 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 6744460 - 6744185
Alignment:
| Q |
9 |
aggagcagagaaacgaatgatgagttcatgggagaaagnnnnnnnngagtaacatcatggtttacactccaacattttttagtgactcacaactttgtct |
108 |
Q |
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| T |
6744460 |
aggaacagagaaatgaatgatgagttcatgggagaaa-aaaaaatagagtaacatcatggtttacactccaacattttatagtgactcacaactttgtct |
6744362 |
T |
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| Q |
109 |
tgtgttgcaacacagttctctcgattttgaaacaacaaaaacatgatattattgaccattggactgatatgcatcaaataaactatgccttagattcaca |
208 |
Q |
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| T |
6744361 |
tgtgttgcaacacagttctctcgattttgaaacaaccaaaacatgatattattgaccattggactgatatgcatcaaataaactatgccttagattcaca |
6744262 |
T |
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| Q |
209 |
ttattcctttcaaagaggaaaatcc-agaacataatatatctaaaacacattaccagataaaaataataatcaagct |
284 |
Q |
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| T |
6744261 |
ttattcctttcaaagaggaaaatccaagaacataatatatctaaaacaaattaccggataaaaataataatcaagct |
6744185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 9 - 284
Target Start/End: Complemental strand, 4433859 - 4433580
Alignment:
| Q |
9 |
aggagcagagaaacgaatgatgagttcatgggagaaagnnnnnnnngag--taacatcatggtttacactccaacattttttagtgactcacaactttgt |
106 |
Q |
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| T |
4433859 |
aggaacagagaaacgaatgatgagttcatgggagaaaaaaaaaatagagagtaacatcatggtttacactccaacattttatagtgagtcacaactttgt |
4433760 |
T |
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| Q |
107 |
cttgtgttgcaacacagttctctcgattttgaaacaacaaaaacatgatattattg--accattggactgatatgcatcaaataaactatgccttagatt |
204 |
Q |
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| T |
4433759 |
cttgtgttgcaacacagttctctcgattttgcaacaaccaaaacatgatattattgtaaccattggactgatatgcatcaaataaactatgccttagatt |
4433660 |
T |
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| Q |
205 |
cacattattcctttcaaagaggaaaatccagaacataatatatctaaaacacattaccagataaaaataataatcaagct |
284 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
4433659 |
cacattattcctttcaaagaggaagatccagaacataatatatctaaaacaaattaccggataaaaataataatcaagct |
4433580 |
T |
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