View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2880_low_41 (Length: 263)
Name: NF2880_low_41
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_41 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 35426699 - 35426937
Alignment:
| Q |
1 |
acagttagaggagttaacacatagccagccacattcaagcccctcaagctcaactatcatgatttttacatacactacttttttagttttgtaaggatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35426699 |
acagttagaggagttaacacatagccagccacattcaagcccctca------actatcatgatttttacatacactacttttttagttttgcaaggatct |
35426792 |
T |
|
| Q |
101 |
aggtagagttaaaaaagacatcaatttagtttcacgacatttctttataaaggagattatcctttaacaattttcatgatattgattagtatatgtaatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35426793 |
aggtagagttaaaaaagacatcaatttagtttcacaacatttctttataaaggagattatcctttaacaattttcatgatattgattagtatatgtaatt |
35426892 |
T |
|
| Q |
201 |
atgtaggcaccacttaatgatacaagcattgcaagactgattgat |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35426893 |
atgtaggcaccacttaatgatacaagcattgcaagactgattgat |
35426937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 49 - 245
Target Start/End: Complemental strand, 35374944 - 35374728
Alignment:
| Q |
49 |
ctcaactatcatgatttttacatacactacttttttagttttgtaaggatctaggtagagttaaaaaagacatcaatttagtttcacga----------- |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| | |
|
|
| T |
35374944 |
ctcaactatcatgatttttacatacactacttttttagttttgtagggatctaggtagagttaaaaaagacattaattttgtttcacaatattttttatg |
35374845 |
T |
|
| Q |
138 |
--------catttctttataaaggagattatccttt-aacaattttcatgatattgattagtatatgtaattatgtaggcaccacttaatgatacaagca |
228 |
Q |
| |
|
||| |||| ||||||| ||||||||||| || ||||| | |||||||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
35374844 |
gtaaattccatgtcttcataaaggggattatcctttaaaaaatttccttgatattgattagtctatgtaattatgtatgcaccacttaatgatacaagca |
35374745 |
T |
|
| Q |
229 |
ttgcaagactgattgat |
245 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35374744 |
ttgcaagactgattgat |
35374728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University