View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2880_low_42 (Length: 251)
Name: NF2880_low_42
Description: NF2880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2880_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 9770661 - 9770875
Alignment:
| Q |
22 |
actagtccttacctctgatgataatatgcgtttagtaatcttctgtgattattgattccacgcctacaataacattcgtagagcacagcttaatgattct |
121 |
Q |
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| T |
9770661 |
actagtccttacctctgatgataatatgcgtttagtaatcttctgtgattattgattcgacgcctacaataacattcgtagagcacagcttaatgattct |
9770760 |
T |
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| Q |
122 |
ttttcaaagttttgaaaaaactctttcttttgctttggtgttgatggtatattgaataattccacaatatagtgaatcaaggaatcagaaagttgtgggc |
221 |
Q |
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| T |
9770761 |
tttccaaagttttgaaaaaactctttcttttgctttggtgttgatggtatattgaataattccacaatatagtgaatcaaggaatcagaaagttgtgggc |
9770860 |
T |
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| Q |
222 |
ccgaagacacaggtt |
236 |
Q |
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||||||||||||||| |
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| T |
9770861 |
ccgaagacacaggtt |
9770875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 25466986 - 25466872
Alignment:
| Q |
24 |
tagtccttacctctgatgataatatgcgtttagtaatcttctgtgattattga-ttccacgcctacaataacattcgtagagcacagcttaatgattctt |
122 |
Q |
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| T |
25466986 |
tagttcttacctctgatgatactatgc-tttagtaatgttgtgtgattatttaattcgaagcctacgacaacatttatagaacatagcttaatgattctt |
25466888 |
T |
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| Q |
123 |
tttcaaagttttgaaa |
138 |
Q |
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| T |
25466887 |
ttccaaagttttgaaa |
25466872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 25466790 - 25466744
Alignment:
| Q |
169 |
tatattgaataattccacaatatagtgaatcaaggaatcagaaagtt |
215 |
Q |
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| T |
25466790 |
tatattgaataattccacattttagtgaagcaaggaatcagaaagtt |
25466744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 36217024 - 36217081
Alignment:
| Q |
22 |
actagtccttacctctgatgataatatgcgtttagtaatcttctgtgattattgattc |
79 |
Q |
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|||||| |||||||||||| ||||||||| |||||||||||| |||||||||| |||| |
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| T |
36217024 |
actagttcttacctctgattataatatgcctttagtaatcttgtgtgattattaattc |
36217081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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